Wall clock time and date at job start Mon Mar 30 2020 07:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38211 * 120.00037 * 2 1 4 4 C 1.38332 * 120.00804 * 179.97438 * 3 2 1 5 5 Cl 1.73597 * 119.98735 * 179.97438 * 4 3 2 6 6 C 1.38381 * 120.02813 * 0.02562 * 4 3 2 7 7 C 1.38164 * 120.00717 * 0.02562 * 6 4 3 8 8 C 1.50703 * 120.00429 * 180.02562 * 7 6 4 9 9 H 1.09001 * 109.47268 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47085 * 59.99882 * 8 7 6 11 11 H 1.08003 * 119.99825 * 265.15209 * 10 8 7 12 12 C 1.37875 * 119.99891 * 85.14796 * 10 8 7 13 13 N 1.31511 * 120.00394 * 5.06372 * 12 10 8 14 14 Si 1.86807 * 119.99868 * 185.06348 * 12 10 8 15 15 H 1.48502 * 109.47084 * 89.99951 * 14 12 10 16 16 H 1.48497 * 109.47108 * 210.00140 * 14 12 10 17 17 H 1.48503 * 109.46897 * 330.00311 * 14 12 10 18 18 C 1.52995 * 109.47266 * 299.99930 * 8 7 6 19 19 C 1.53000 * 117.50157 * 253.86789 * 18 8 7 20 20 C 1.52994 * 59.99995 * 252.50826 * 19 18 8 21 21 C 1.38427 * 120.00881 * 179.72387 * 2 1 3 22 22 F 1.35102 * 120.01262 * 359.97438 * 21 2 1 23 23 H 1.09004 * 109.46635 * 90.00680 * 1 2 3 24 24 H 1.08991 * 109.47246 * 330.00453 * 1 2 3 25 25 H 1.09003 * 109.47053 * 209.99894 * 1 2 3 26 26 H 1.07996 * 119.99993 * 359.97438 * 3 2 1 27 27 H 1.07996 * 119.99662 * 179.97438 * 6 4 3 28 28 H 0.96995 * 120.00144 * 180.02562 * 13 12 10 29 29 H 1.09004 * 115.54878 * 39.57185 * 18 8 7 30 30 H 1.09005 * 117.49346 * 0.02562 * 19 18 8 31 31 H 1.09005 * 117.50117 * 145.01622 * 19 18 8 32 32 H 1.09001 * 117.49564 * 252.50774 * 20 19 18 33 33 H 1.09001 * 117.50262 * 107.48918 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1969 0.0000 4 6 3.5814 1.1971 0.0005 5 17 4.4489 2.7008 -0.0001 6 6 4.2741 -0.0009 0.0005 7 6 3.5842 -1.1979 -0.0005 8 6 4.3386 -2.5025 0.0001 9 1 3.6308 -3.3315 -0.0005 10 6 5.2036 -2.5820 1.2315 11 1 6.2388 -2.2775 1.1848 12 6 4.6735 -3.0435 2.4177 13 7 3.4434 -3.5074 2.4519 14 14 5.7026 -3.0096 3.9764 15 1 5.4987 -1.7158 4.6762 16 1 5.2898 -4.1243 4.8664 17 1 7.1376 -3.1617 3.6255 18 6 5.2196 -2.5827 -1.2481 19 6 4.7733 -3.5240 -2.3687 20 6 5.9759 -3.8894 -1.4963 21 6 2.1994 -1.1987 0.0058 22 9 1.5243 -2.3689 0.0119 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 0.8899 0.5137 25 1 -0.3633 -0.8900 0.5138 26 1 1.6581 2.1322 -0.0004 27 1 5.3540 -0.0001 0.0005 28 1 3.0704 -3.8317 3.2865 29 1 5.7116 -1.6538 -1.5368 30 1 3.8517 -4.0859 -2.2167 31 1 4.9714 -3.2145 -3.3949 32 1 6.9653 -3.8202 -1.9486 33 1 5.8458 -4.6919 -0.7703 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260600791.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:35 Heat of formation + Delta-G solvation = -22.863885 kcal Electronic energy + Delta-G solvation = -18386.883562 eV Core-core repulsion = 15352.885533 eV Total energy + Delta-G solvation = -3033.998029 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -47.92212 -38.77172 -36.77940 -35.94467 -33.32919 -32.09677 -30.25757 -27.41803 -26.44972 -23.83874 -21.61342 -21.32598 -21.21316 -18.96900 -16.79450 -16.52736 -15.86274 -15.42852 -14.90704 -14.66925 -14.35714 -13.31715 -13.22596 -13.03365 -12.66373 -12.53207 -12.48920 -12.33988 -11.85838 -11.45704 -11.24439 -10.97022 -10.79411 -10.76231 -10.72288 -10.44681 -10.27910 -9.96819 -9.47059 -9.33935 -8.84487 -8.52653 -8.02870 -7.66743 -6.11014 -4.16416 1.71106 1.87388 2.58068 3.26790 3.34090 3.36176 4.15174 4.35710 4.72302 4.99267 5.16188 5.20351 5.48185 5.54632 5.61650 5.79952 5.84355 5.86416 5.92227 6.02549 6.26148 6.27640 6.40537 6.42450 6.57592 6.72914 6.77581 6.83437 6.94110 6.99343 7.19256 7.57822 7.69605 7.83381 8.21670 8.89226 9.47446 10.95661 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.008162 C = 0.007741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.127019 B = 3429.781891 C = 3616.146640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.123 4.123 3 C -0.117 4.117 4 C -0.047 4.047 5 Cl -0.092 7.092 6 C -0.084 4.084 7 C -0.035 4.035 8 C 0.094 3.906 9 H 0.072 0.928 10 C -0.506 4.506 11 H 0.061 0.939 12 C 0.068 3.932 13 N -0.876 5.876 14 Si 0.889 3.111 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.272 1.272 18 C -0.121 4.121 19 C -0.200 4.200 20 C -0.168 4.168 21 C 0.107 3.893 22 F -0.127 7.127 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.127 0.873 27 H 0.134 0.866 28 H 0.263 0.737 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.176 6.542 -6.006 9.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.124 4.124 3 C -0.136 4.136 4 C -0.074 4.074 5 Cl -0.063 7.063 6 C -0.103 4.103 7 C -0.037 4.037 8 C 0.075 3.925 9 H 0.090 0.910 10 C -0.543 4.543 11 H 0.080 0.920 12 C -0.136 4.136 13 N -0.512 5.512 14 Si 0.717 3.283 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.140 4.140 19 C -0.237 4.237 20 C -0.205 4.205 21 C 0.087 3.913 22 F -0.105 7.105 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.145 0.855 27 H 0.152 0.848 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.271 6.529 -5.873 9.071 hybrid contribution 0.483 0.059 1.091 1.194 sum -1.788 6.588 -4.782 8.335 Atomic orbital electron populations 1.20627 0.90625 1.02903 1.02091 1.19703 0.96440 0.91695 1.04582 1.20386 0.91686 0.97272 1.04235 1.20817 0.92076 0.86398 1.08079 1.98312 1.77285 1.33417 1.97287 1.20704 1.00580 0.89163 0.99817 1.20789 0.91335 0.98352 0.93210 1.17624 0.93703 0.89990 0.91166 0.91030 1.20880 0.96485 1.43864 0.93098 0.92045 1.25018 0.95088 0.94411 0.99111 1.69954 1.14360 1.40046 1.26861 0.86631 0.80707 0.77759 0.83249 1.20538 1.21205 1.19675 1.22414 1.01871 0.93087 0.96579 1.22995 0.99317 1.06053 0.95323 1.22715 0.94551 1.00802 1.02466 1.17457 0.90004 0.80685 1.03119 1.91462 1.79744 1.45844 1.93495 0.91411 0.91604 0.91201 0.85532 0.84801 0.92701 0.89598 0.89437 0.90382 0.90390 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 9.84 36.01 0.35 -1.18 16 2 C -0.12 -2.23 5.89 -104.56 -0.62 -2.84 16 3 C -0.12 -1.98 9.48 -39.56 -0.38 -2.35 16 4 C -0.05 -0.85 6.32 -39.49 -0.25 -1.10 16 5 Cl -0.09 -1.43 28.95 -51.86 -1.50 -2.93 16 6 C -0.08 -1.68 8.45 -39.56 -0.33 -2.01 16 7 C -0.04 -0.77 4.78 -104.56 -0.50 -1.27 16 8 C 0.09 2.20 2.04 -92.92 -0.19 2.01 16 9 H 0.07 1.89 6.32 -51.93 -0.33 1.57 16 10 C -0.51 -12.98 7.71 -34.44 -0.27 -13.24 16 11 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 12 C 0.07 1.80 5.45 -17.82 -0.10 1.70 16 13 N -0.88 -24.38 12.92 55.43 0.72 -23.66 16 14 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 18 C -0.12 -2.44 4.93 -90.62 -0.45 -2.88 16 19 C -0.20 -3.57 10.18 -26.73 -0.27 -3.84 16 20 C -0.17 -3.12 10.01 -26.74 -0.27 -3.39 16 21 C 0.11 2.30 7.19 -39.42 -0.28 2.01 16 22 F -0.13 -2.91 15.40 2.25 0.03 -2.87 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 25 H 0.07 1.06 7.63 -51.93 -0.40 0.67 16 26 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 27 H 0.13 2.61 7.80 -52.49 -0.41 2.20 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.09 1.64 7.42 -51.93 -0.39 1.25 16 30 H 0.09 1.61 8.08 -51.93 -0.42 1.19 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 LS Contribution 302.48 15.07 4.56 4.56 Total: -1.00 -26.97 302.48 -8.77 -35.74 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -4.02 Total: 1.75 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: -3.54 Total: -28.38 kcal Atomic # 7 Polarization: -24.38 SS G_CDS: 0.72 Total: -23.66 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.03 Total: -2.87 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -1.50 Total: -2.93 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -26.97 -8.77 -35.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260600791.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.875 kcal (2) G-P(sol) polarization free energy of solvation -26.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds