Wall clock time and date at job start Mon Mar 30 2020 07:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38211 * 120.00037 * 2 1 4 4 C 1.38332 * 120.00804 * 179.97438 * 3 2 1 5 5 Cl 1.73597 * 119.98735 * 179.97438 * 4 3 2 6 6 C 1.38381 * 120.02813 * 0.02562 * 4 3 2 7 7 C 1.38164 * 120.00717 * 0.02562 * 6 4 3 8 8 C 1.50703 * 120.00429 * 180.02562 * 7 6 4 9 9 H 1.09001 * 109.47268 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47085 * 59.99882 * 8 7 6 11 11 H 1.08003 * 119.99825 * 265.15209 * 10 8 7 12 12 C 1.37875 * 119.99891 * 85.14796 * 10 8 7 13 13 N 1.31511 * 120.00394 * 5.06372 * 12 10 8 14 14 Si 1.86807 * 119.99868 * 185.06348 * 12 10 8 15 15 H 1.48502 * 109.47084 * 89.99951 * 14 12 10 16 16 H 1.48497 * 109.47108 * 210.00140 * 14 12 10 17 17 H 1.48503 * 109.46897 * 330.00311 * 14 12 10 18 18 C 1.52995 * 109.47266 * 299.99930 * 8 7 6 19 19 C 1.53000 * 117.50157 * 253.86789 * 18 8 7 20 20 C 1.52994 * 59.99995 * 252.50826 * 19 18 8 21 21 C 1.38427 * 120.00881 * 179.72387 * 2 1 3 22 22 F 1.35102 * 120.01262 * 359.97438 * 21 2 1 23 23 H 1.09004 * 109.46635 * 90.00680 * 1 2 3 24 24 H 1.08991 * 109.47246 * 330.00453 * 1 2 3 25 25 H 1.09003 * 109.47053 * 209.99894 * 1 2 3 26 26 H 1.07996 * 119.99993 * 359.97438 * 3 2 1 27 27 H 1.07996 * 119.99662 * 179.97438 * 6 4 3 28 28 H 0.96995 * 120.00144 * 180.02562 * 13 12 10 29 29 H 1.09004 * 115.54878 * 39.57185 * 18 8 7 30 30 H 1.09005 * 117.49346 * 0.02562 * 19 18 8 31 31 H 1.09005 * 117.50117 * 145.01622 * 19 18 8 32 32 H 1.09001 * 117.49564 * 252.50774 * 20 19 18 33 33 H 1.09001 * 117.50262 * 107.48918 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1969 0.0000 4 6 3.5814 1.1971 0.0005 5 17 4.4489 2.7008 -0.0001 6 6 4.2741 -0.0009 0.0005 7 6 3.5842 -1.1979 -0.0005 8 6 4.3386 -2.5025 0.0001 9 1 3.6308 -3.3315 -0.0005 10 6 5.2036 -2.5820 1.2315 11 1 6.2388 -2.2775 1.1848 12 6 4.6735 -3.0435 2.4177 13 7 3.4434 -3.5074 2.4519 14 14 5.7026 -3.0096 3.9764 15 1 5.4987 -1.7158 4.6762 16 1 5.2898 -4.1243 4.8664 17 1 7.1376 -3.1617 3.6255 18 6 5.2196 -2.5827 -1.2481 19 6 4.7733 -3.5240 -2.3687 20 6 5.9759 -3.8894 -1.4963 21 6 2.1994 -1.1987 0.0058 22 9 1.5243 -2.3689 0.0119 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 0.8899 0.5137 25 1 -0.3633 -0.8900 0.5138 26 1 1.6581 2.1322 -0.0004 27 1 5.3540 -0.0001 0.0005 28 1 3.0704 -3.8317 3.2865 29 1 5.7116 -1.6538 -1.5368 30 1 3.8517 -4.0859 -2.2167 31 1 4.9714 -3.2145 -3.3949 32 1 6.9653 -3.8202 -1.9486 33 1 5.8458 -4.6919 -0.7703 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260600791.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:30 Heat of formation + Delta-G solvation = -34.131292 kcal Electronic energy + Delta-G solvation = -18387.372153 eV Core-core repulsion = 15352.885533 eV Total energy + Delta-G solvation = -3034.486621 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.59085 -40.27934 -38.31831 -37.29836 -35.07035 -33.72897 -31.80060 -29.13365 -27.81271 -25.69967 -23.10794 -22.83533 -22.68870 -20.62493 -18.44787 -18.29202 -17.48588 -16.90181 -16.69730 -16.36446 -15.87791 -14.91372 -14.77265 -14.36025 -14.32458 -14.18193 -13.85271 -13.62432 -13.30739 -13.20535 -12.88998 -12.65938 -12.51029 -12.25711 -12.19598 -12.04695 -11.73184 -11.59927 -11.17550 -11.02173 -10.54833 -10.44433 -9.51571 -9.21227 -8.11251 -6.21707 0.19917 0.40099 1.18738 1.39166 1.41299 1.49587 2.40148 2.65584 3.14553 3.23656 3.54159 3.81643 3.97018 4.15258 4.23511 4.33311 4.38486 4.42489 4.65072 4.77976 4.81939 4.88384 4.92238 5.03611 5.16893 5.21591 5.28972 5.30980 5.40681 5.44270 5.57820 5.73384 5.92100 6.02939 6.29132 6.89449 7.44226 8.94339 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.008162 C = 0.007741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.127019 B = 3429.781891 C = 3616.146640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.118 4.118 3 C -0.107 4.107 4 C -0.045 4.045 5 Cl -0.065 7.065 6 C -0.095 4.095 7 C -0.058 4.058 8 C 0.097 3.903 9 H 0.030 0.970 10 C -0.507 4.507 11 H 0.059 0.941 12 C 0.019 3.981 13 N -0.910 5.910 14 Si 0.943 3.057 15 H -0.280 1.280 16 H -0.288 1.288 17 H -0.264 1.264 18 C -0.140 4.140 19 C -0.183 4.183 20 C -0.166 4.166 21 C 0.071 3.929 22 F -0.146 7.146 23 H 0.089 0.911 24 H 0.095 0.905 25 H 0.055 0.945 26 H 0.165 0.835 27 H 0.133 0.867 28 H 0.259 0.741 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.951 8.808 -6.737 11.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.119 4.119 3 C -0.125 4.125 4 C -0.072 4.072 5 Cl -0.036 7.036 6 C -0.114 4.114 7 C -0.060 4.060 8 C 0.078 3.922 9 H 0.048 0.952 10 C -0.545 4.545 11 H 0.077 0.923 12 C -0.181 4.181 13 N -0.548 5.548 14 Si 0.769 3.231 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.188 1.188 18 C -0.158 4.158 19 C -0.220 4.220 20 C -0.203 4.203 21 C 0.052 3.948 22 F -0.125 7.125 23 H 0.107 0.893 24 H 0.114 0.886 25 H 0.074 0.926 26 H 0.182 0.818 27 H 0.151 0.849 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.030 8.802 -6.614 11.195 hybrid contribution 0.412 -0.551 1.248 1.425 sum -1.617 8.251 -5.366 9.975 Atomic orbital electron populations 1.20726 0.87970 1.03684 1.03715 1.20117 0.98435 0.90716 1.02641 1.20804 0.91371 0.98206 1.02163 1.20921 0.92786 0.86827 1.06620 1.98322 1.76888 1.31336 1.97085 1.20682 1.00567 0.89439 1.00718 1.20659 0.91884 0.98275 0.95139 1.17392 0.93092 0.89694 0.91996 0.95198 1.21158 0.96592 1.42694 0.94039 0.92290 1.25689 0.95982 0.94664 1.01770 1.70098 1.15867 1.41793 1.27011 0.85777 0.79744 0.77408 0.80151 1.20558 1.21349 1.18786 1.22346 1.02665 0.94330 0.96456 1.23013 0.98411 1.04266 0.96278 1.22738 0.96245 0.99041 1.02229 1.17867 0.90273 0.81346 1.05324 1.91404 1.79994 1.47137 1.93933 0.89259 0.88628 0.92582 0.81771 0.84927 0.93219 0.88324 0.90848 0.87193 0.87505 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.78 9.84 71.24 0.70 -2.08 16 2 C -0.12 -4.09 5.89 -19.82 -0.12 -4.21 16 3 C -0.11 -3.29 9.48 22.29 0.21 -3.08 16 4 C -0.04 -1.51 6.32 22.33 0.14 -1.37 16 5 Cl -0.07 -1.84 28.95 -2.72 -0.08 -1.92 16 6 C -0.10 -3.76 8.45 22.29 0.19 -3.58 16 7 C -0.06 -2.60 4.78 -19.82 -0.09 -2.70 16 8 C 0.10 4.71 2.04 -12.29 -0.03 4.68 16 9 H 0.03 1.68 6.32 -2.39 -0.02 1.66 16 10 C -0.51 -26.69 7.71 25.60 0.20 -26.49 16 11 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 12 C 0.02 1.04 5.45 84.65 0.46 1.50 16 13 N -0.91 -52.71 12.92 21.45 0.28 -52.43 16 14 Si 0.94 43.45 29.54 68.60 2.03 45.48 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 16 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 17 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 18 C -0.14 -5.64 4.93 -10.80 -0.05 -5.69 16 19 C -0.18 -6.43 10.18 30.59 0.31 -6.12 16 20 C -0.17 -6.09 10.01 30.59 0.31 -5.78 16 21 C 0.07 3.11 7.19 22.37 0.16 3.27 16 22 F -0.15 -7.00 15.40 44.97 0.69 -6.31 16 23 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.09 1.97 8.08 -2.39 -0.02 1.95 16 25 H 0.06 1.65 7.63 -2.39 -0.02 1.64 16 26 H 0.16 3.81 8.06 -2.91 -0.02 3.78 16 27 H 0.13 5.13 7.80 -2.91 -0.02 5.11 16 28 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.10 3.69 7.42 -2.38 -0.02 3.67 16 30 H 0.07 2.78 8.08 -2.38 -0.02 2.76 16 31 H 0.11 3.16 8.14 -2.38 -0.02 3.14 16 32 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -60.06 302.48 6.42 -53.64 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 1.11 Total: 13.18 kcal Atomic # 6 Polarization: -54.03 SS G_CDS: 2.39 Total: -51.64 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.28 Total: -52.43 kcal Atomic # 9 Polarization: -7.00 SS G_CDS: 0.69 Total: -6.31 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.08 Total: -1.92 kcal Total: -60.06 6.42 -53.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260600791.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.511 kcal (2) G-P(sol) polarization free energy of solvation -60.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds