Wall clock time and date at job start Mon Mar 30 2020 07:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38211 * 120.00462 * 2 1 4 4 C 1.38329 * 120.01328 * 180.02562 * 3 2 1 5 5 Cl 1.73599 * 119.98876 * 180.02562 * 4 3 2 6 6 C 1.38370 * 120.02315 * 359.72037 * 4 3 2 7 7 C 1.38166 * 120.01486 * 0.55699 * 6 4 3 8 8 C 1.50697 * 120.01111 * 179.72172 * 7 6 4 9 9 H 1.09000 * 109.47374 * 179.72352 * 8 7 6 10 10 C 1.50699 * 109.46956 * 299.72557 * 8 7 6 11 11 H 1.08003 * 120.00271 * 359.97438 * 10 8 7 12 12 C 1.37879 * 120.00161 * 179.97438 * 10 8 7 13 13 N 1.31509 * 119.99895 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 120.00268 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.46680 * 60.00301 * 14 12 10 16 16 H 1.48492 * 109.47298 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46944 * 300.00817 * 14 12 10 18 18 C 1.53006 * 109.47239 * 59.72214 * 8 7 6 19 19 C 1.53001 * 117.49866 * 128.62372 * 18 8 7 20 20 C 1.53000 * 117.49497 * 59.99964 * 18 8 7 21 21 C 1.38429 * 120.00988 * 180.02562 * 2 1 3 22 22 F 1.35103 * 120.01222 * 359.95596 * 21 2 1 23 23 H 1.09003 * 109.47090 * 269.97314 * 1 2 3 24 24 H 1.08996 * 109.47545 * 29.97177 * 1 2 3 25 25 H 1.08997 * 109.46868 * 149.98076 * 1 2 3 26 26 H 1.08005 * 119.99214 * 0.04666 * 3 2 1 27 27 H 1.08003 * 119.99409 * 180.28004 * 6 4 3 28 28 H 0.97006 * 120.00358 * 179.97438 * 13 12 10 29 29 H 1.08996 * 115.55031 * 274.33858 * 18 8 7 30 30 H 1.08996 * 117.49555 * 359.97438 * 19 18 8 31 31 H 1.08995 * 117.49577 * 145.02406 * 19 18 8 32 32 H 1.08998 * 117.49694 * 214.97781 * 20 18 8 33 33 H 1.08998 * 117.50118 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1969 0.0000 4 6 3.5814 1.1971 -0.0005 5 17 4.4489 2.7008 0.0001 6 6 4.2740 -0.0008 0.0048 7 6 3.5841 -1.1980 -0.0010 8 6 4.3385 -2.5025 -0.0016 9 1 3.6307 -3.3315 -0.0015 10 6 5.2045 -2.5815 -1.2323 11 1 5.2080 -1.7685 -1.9433 12 6 5.9925 -3.6916 -1.4508 13 7 5.9879 -4.6818 -0.5854 14 14 7.0654 -3.7898 -2.9768 15 1 8.0292 -2.6601 -2.9777 16 1 7.8089 -5.0752 -2.9774 17 1 6.2107 -3.7122 -4.1887 18 6 5.2187 -2.5833 1.2474 19 6 5.1078 -3.8424 2.1095 20 6 4.5218 -2.5198 2.6080 21 6 2.1993 -1.1987 -0.0005 22 9 1.5243 -2.3690 -0.0002 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6581 2.1322 0.0008 27 1 5.3540 -0.0001 0.0089 28 1 6.5420 -5.4631 -0.7393 29 1 6.1997 -2.1160 1.1621 30 1 4.4075 -4.6129 1.7872 31 1 6.0161 -4.2038 2.5916 32 1 5.0446 -2.0112 3.4179 33 1 3.4364 -2.4200 2.6134 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260600793.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:40 Heat of formation + Delta-G solvation = -31.151496 kcal Electronic energy + Delta-G solvation = -18327.049826 eV Core-core repulsion = 15292.692419 eV Total energy + Delta-G solvation = -3034.357407 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.82087 -40.41242 -38.30373 -37.32598 -34.84085 -33.88041 -31.93557 -29.20554 -27.85132 -25.54880 -23.13147 -22.81321 -22.73404 -20.62325 -18.63443 -18.35927 -17.54771 -16.95703 -16.63659 -16.45313 -15.86677 -14.95951 -14.80684 -14.45033 -14.37335 -14.31158 -13.96557 -13.64424 -13.35932 -12.95973 -12.85265 -12.76196 -12.42954 -12.26725 -12.14766 -11.96136 -11.85565 -11.62534 -11.49304 -10.68689 -10.61744 -10.26210 -9.60004 -9.34906 -8.06921 -6.21095 0.07774 0.29450 1.14728 1.42545 1.43094 1.50189 2.41317 2.57466 3.19064 3.29568 3.38562 3.75302 3.90953 4.16763 4.22035 4.31160 4.42513 4.49821 4.57136 4.79503 4.84498 4.87582 4.93267 5.07476 5.15436 5.23844 5.25882 5.31967 5.40096 5.45726 5.59373 5.72477 5.87893 5.94239 6.28260 6.84648 7.45375 8.97145 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.015962 B = 0.007425 C = 0.006550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.695210 B = 3770.073702 C = 4273.874864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.105 4.105 3 C -0.098 4.098 4 C -0.040 4.040 5 Cl -0.062 7.062 6 C -0.088 4.088 7 C -0.067 4.067 8 C 0.110 3.890 9 H 0.006 0.994 10 C -0.533 4.533 11 H 0.051 0.949 12 C 0.026 3.974 13 N -0.893 5.893 14 Si 0.946 3.054 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.277 1.277 18 C -0.097 4.097 19 C -0.140 4.140 20 C -0.192 4.192 21 C 0.063 3.937 22 F -0.149 7.149 23 H 0.088 0.912 24 H 0.099 0.901 25 H 0.062 0.938 26 H 0.171 0.829 27 H 0.129 0.871 28 H 0.260 0.740 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.329 11.553 3.273 14.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.106 4.106 3 C -0.116 4.116 4 C -0.066 4.066 5 Cl -0.033 7.033 6 C -0.107 4.107 7 C -0.068 4.068 8 C 0.092 3.908 9 H 0.024 0.976 10 C -0.571 4.571 11 H 0.069 0.931 12 C -0.175 4.175 13 N -0.530 5.530 14 Si 0.772 3.228 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.203 1.203 18 C -0.116 4.116 19 C -0.177 4.177 20 C -0.229 4.229 21 C 0.044 3.956 22 F -0.127 7.127 23 H 0.107 0.893 24 H 0.118 0.882 25 H 0.081 0.919 26 H 0.188 0.812 27 H 0.147 0.853 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.202 11.454 3.313 13.930 hybrid contribution 0.950 -0.873 -0.883 1.563 sum -6.252 10.581 2.431 12.527 Atomic orbital electron populations 1.20782 0.87417 1.04232 1.03942 1.20097 0.98592 0.90220 1.01697 1.20910 0.91089 0.98566 1.01053 1.20955 0.92942 0.86823 1.05917 1.98340 1.76940 1.31054 1.96991 1.20687 1.00621 0.89462 0.99906 1.20345 0.91915 0.97643 0.96930 1.17233 0.92324 0.88085 0.93203 0.97552 1.21182 1.25656 1.03780 1.06506 0.93059 1.25607 0.97806 0.95378 0.98731 1.70128 1.39633 1.07199 1.36047 0.85798 0.79134 0.77355 0.80468 1.19583 1.20963 1.20256 1.21965 0.98503 1.01125 0.90009 1.22347 1.01187 0.90884 1.03304 1.23041 0.99197 1.02055 0.98609 1.17846 0.89743 0.81573 1.06480 1.91403 1.80018 1.47140 1.94171 0.89340 0.88215 0.91896 0.81184 0.85308 0.93110 0.90935 0.91680 0.90263 0.88165 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.27 9.83 71.24 0.70 -1.57 16 2 C -0.10 -3.09 5.89 -19.83 -0.12 -3.20 16 3 C -0.10 -2.58 9.48 22.29 0.21 -2.37 16 4 C -0.04 -1.22 6.32 22.32 0.14 -1.08 16 5 Cl -0.06 -1.64 28.95 -2.72 -0.08 -1.72 16 6 C -0.09 -3.32 8.61 22.28 0.19 -3.13 16 7 C -0.07 -2.85 4.39 -19.82 -0.09 -2.94 16 8 C 0.11 5.49 2.09 -12.29 -0.03 5.46 16 9 H 0.01 0.36 6.88 -2.39 -0.02 0.35 16 10 C -0.53 -28.88 8.23 25.60 0.21 -28.67 16 11 H 0.05 2.77 7.61 -2.91 -0.02 2.75 16 12 C 0.03 1.43 5.30 84.66 0.45 1.87 16 13 N -0.89 -49.88 11.44 21.45 0.25 -49.63 16 14 Si 0.95 43.21 29.54 68.60 2.03 45.24 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 C -0.10 -4.50 3.86 -10.79 -0.04 -4.55 16 19 C -0.14 -6.21 9.05 30.60 0.28 -5.94 16 20 C -0.19 -7.50 9.87 30.60 0.30 -7.20 16 21 C 0.06 2.42 7.19 22.37 0.16 2.58 16 22 F -0.15 -6.18 15.40 44.97 0.69 -5.49 16 23 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.10 1.52 8.09 -2.39 -0.02 1.50 16 25 H 0.06 1.45 7.64 -2.39 -0.02 1.43 16 26 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 27 H 0.13 5.07 8.05 -2.91 -0.02 5.04 16 28 H 0.26 13.97 8.31 -92.70 -0.77 13.20 16 29 H 0.07 3.50 8.11 -2.39 -0.02 3.49 16 30 H 0.06 3.14 8.05 -2.39 -0.02 3.12 16 31 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 33 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -58.64 300.11 6.37 -52.27 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 1.11 Total: 10.06 kcal Atomic # 6 Polarization: -53.10 SS G_CDS: 2.37 Total: -50.73 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.25 Total: -49.63 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.69 Total: -5.49 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.08 Total: -1.72 kcal Total: -58.64 6.37 -52.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260600793.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.114 kcal (2) G-P(sol) polarization free energy of solvation -58.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds