Wall clock time and date at job start Mon Mar 30 2020 07:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38263 * 119.96524 * 2 1 4 4 C 1.38282 * 120.01051 * 179.97438 * 3 2 1 5 5 Cl 1.73603 * 120.02405 * 179.97438 * 4 3 2 6 6 C 1.38593 * 119.95287 * 0.02562 * 4 3 2 7 7 F 1.35096 * 120.03376 * 180.02562 * 6 4 3 8 8 C 1.38403 * 119.93751 * 359.97438 * 6 4 3 9 9 C 1.50696 * 120.00762 * 179.97438 * 8 6 4 10 10 C 1.50706 * 115.54960 * 264.04622 * 9 8 6 11 11 H 1.08003 * 119.99971 * 277.58130 * 10 9 8 12 12 C 1.37874 * 119.99617 * 97.58187 * 10 9 8 13 13 N 1.31515 * 120.00682 * 353.81719 * 12 10 9 14 14 Si 1.86800 * 119.99709 * 173.54922 * 12 10 9 15 15 H 1.48495 * 109.47780 * 59.99592 * 14 12 10 16 16 H 1.48499 * 109.47040 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47034 * 299.99498 * 14 12 10 18 18 C 1.53002 * 117.51887 * 49.74936 * 9 8 6 19 19 C 1.53003 * 117.50178 * 118.38117 * 9 8 6 20 20 C 1.38216 * 119.97350 * 180.25676 * 2 1 3 21 21 C 1.50699 * 119.97637 * 0.02562 * 20 2 1 22 22 H 1.09006 * 109.46973 * 90.00250 * 1 2 3 23 23 H 1.09006 * 109.46987 * 209.99490 * 1 2 3 24 24 H 1.08996 * 109.47752 * 329.99946 * 1 2 3 25 25 H 1.07998 * 119.99759 * 359.97438 * 3 2 1 26 26 H 0.97009 * 119.99243 * 4.49341 * 13 12 10 27 27 H 1.09000 * 117.49209 * 214.97186 * 18 9 8 28 28 H 1.08997 * 117.49719 * 359.97438 * 18 9 8 29 29 H 1.09004 * 117.49735 * 359.96719 * 19 9 8 30 30 H 1.08997 * 117.50345 * 144.99675 * 19 9 8 31 31 H 1.09001 * 109.47658 * 275.13841 * 21 20 2 32 32 H 1.09010 * 109.46906 * 35.13707 * 21 20 2 33 33 H 1.09005 * 109.47313 * 155.13037 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1978 0.0000 4 6 3.5804 1.1989 0.0005 5 17 4.4478 2.7027 -0.0001 6 6 4.2733 -0.0014 0.0005 7 9 5.6243 -0.0022 0.0016 8 6 3.5799 -1.1992 0.0005 9 6 4.3318 -2.5052 0.0000 10 6 4.5333 -3.1386 -1.3526 11 1 3.7460 -3.7319 -1.7938 12 6 5.7227 -2.9606 -2.0268 13 7 6.6337 -2.1414 -1.5484 14 14 6.0435 -3.8887 -3.6158 15 1 5.0068 -3.5300 -4.6166 16 1 7.3841 -3.5239 -4.1401 17 1 5.9946 -5.3496 -3.3543 18 6 5.4447 -2.6807 1.0351 19 6 4.1257 -3.4396 1.1938 20 6 2.1975 -1.1973 -0.0054 21 6 1.4429 -2.5017 -0.0118 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 1.6570 2.1327 -0.0004 26 1 6.4969 -1.7126 -0.6891 27 1 6.3226 -3.2542 0.7377 28 1 5.6335 -1.8512 1.7165 29 1 3.4466 -3.1095 1.9800 30 1 4.1359 -4.5124 1.0011 31 1 1.1808 -2.7750 1.0103 32 1 0.5336 -2.3925 -0.6032 33 1 2.0681 -3.2811 -0.4474 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260600943.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:09 Heat of formation + Delta-G solvation = -18.829346 kcal Electronic energy + Delta-G solvation = -18828.251852 eV Core-core repulsion = 15794.428774 eV Total energy + Delta-G solvation = -3033.823078 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -48.06356 -39.36660 -36.76596 -36.03622 -32.42546 -31.98032 -31.05992 -27.25455 -25.80214 -25.25508 -22.57931 -21.40697 -20.53492 -19.29614 -17.24916 -16.35342 -16.24516 -15.14235 -14.94985 -14.03042 -13.78863 -13.75274 -13.52447 -13.13675 -12.95967 -12.53170 -12.33320 -12.21474 -12.01758 -11.92359 -11.39889 -11.04508 -10.85520 -10.80941 -10.60561 -10.48484 -10.43933 -10.12401 -9.65127 -8.95285 -8.53047 -8.39743 -7.93068 -7.81871 -6.33859 -4.14619 1.49705 1.68182 2.42899 3.41583 3.42347 3.61763 3.91680 4.47863 4.74329 4.91925 5.07655 5.19545 5.36861 5.44157 5.46516 5.69767 5.73497 5.91911 5.96315 6.04543 6.12907 6.14457 6.25920 6.29852 6.46330 6.53292 6.65148 6.75834 6.80959 6.99623 7.11218 7.24511 7.42904 8.12554 8.34809 8.86650 9.61702 11.06018 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.017109 B = 0.008812 C = 0.007213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.200449 B = 3176.555923 C = 3880.816016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C -0.109 4.109 4 C -0.079 4.079 5 Cl -0.072 7.072 6 C 0.111 3.889 7 F -0.113 7.113 8 C -0.034 4.034 9 C 0.051 3.949 10 C -0.573 4.573 11 H 0.058 0.942 12 C 0.029 3.971 13 N -0.896 5.896 14 Si 1.065 2.935 15 H -0.288 1.288 16 H -0.282 1.282 17 H -0.287 1.287 18 C -0.172 4.172 19 C -0.186 4.186 20 C -0.053 4.053 21 C -0.113 4.113 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.131 0.869 26 H 0.291 0.709 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.839 3.959 4.073 11.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.099 4.099 3 C -0.128 4.128 4 C -0.106 4.106 5 Cl -0.043 7.043 6 C 0.091 3.909 7 F -0.091 7.091 8 C -0.036 4.036 9 C 0.051 3.949 10 C -0.610 4.610 11 H 0.076 0.924 12 C -0.180 4.180 13 N -0.531 5.531 14 Si 0.893 3.107 15 H -0.214 1.214 16 H -0.207 1.207 17 H -0.213 1.213 18 C -0.209 4.209 19 C -0.224 4.224 20 C -0.053 4.053 21 C -0.169 4.169 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.148 0.852 26 H 0.106 0.894 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.579 3.931 2.856 9.860 hybrid contribution -0.674 0.577 1.177 1.474 sum -9.254 4.508 4.033 11.055 Atomic orbital electron populations 1.20717 0.90862 1.02482 1.02185 1.19615 0.96010 0.91872 1.02373 1.20496 0.90704 0.98371 1.03188 1.20905 0.92959 0.85704 1.11041 1.98330 1.77080 1.31689 1.97226 1.17308 0.78035 0.92023 1.03577 1.91507 1.27463 1.96877 1.93277 1.19981 0.93198 0.94356 0.96072 1.17712 0.96459 0.88953 0.91820 1.21155 1.03058 1.34641 1.02154 0.92367 1.25814 0.92786 0.95876 1.03513 1.70666 1.37173 1.24079 1.21206 0.83608 0.76419 0.75617 0.75041 1.21432 1.20702 1.21316 1.22819 0.93291 1.02034 1.02800 1.23052 0.99878 0.98208 1.01215 1.19483 0.92254 0.95072 0.98525 1.20849 0.99503 0.95083 1.01461 0.91278 0.91258 0.91889 0.85152 0.89351 0.89004 0.91386 0.91426 0.89587 0.91784 0.92122 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.21 36.00 0.33 -0.92 16 2 C -0.10 -1.59 5.88 -104.62 -0.62 -2.21 16 3 C -0.11 -1.80 9.48 -39.56 -0.38 -2.18 16 4 C -0.08 -1.52 6.33 -39.43 -0.25 -1.77 16 5 Cl -0.07 -1.26 28.62 -51.86 -1.48 -2.75 16 6 C 0.11 2.51 7.08 -39.39 -0.28 2.23 16 7 F -0.11 -2.81 13.04 2.25 0.03 -2.78 16 8 C -0.03 -0.77 5.00 -104.56 -0.52 -1.29 16 9 C 0.05 1.22 0.33 -156.81 -0.05 1.17 16 10 C -0.57 -15.32 8.41 -34.44 -0.29 -15.61 16 11 H 0.06 1.53 7.35 -52.48 -0.39 1.15 16 12 C 0.03 0.80 5.29 -17.82 -0.09 0.71 16 13 N -0.90 -26.46 13.23 55.43 0.73 -25.73 16 14 Si 1.07 24.65 29.91 -169.99 -5.08 19.57 16 15 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 18 C -0.17 -4.04 7.08 -26.73 -0.19 -4.22 16 19 C -0.19 -3.90 8.60 -26.73 -0.23 -4.13 16 20 C -0.05 -1.00 5.86 -104.63 -0.61 -1.61 16 21 C -0.11 -1.83 8.01 36.00 0.29 -1.55 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.07 0.75 6.81 -51.93 -0.35 0.39 16 24 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 25 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 26 H 0.29 8.42 3.28 -40.82 -0.13 8.29 16 27 H 0.09 2.32 7.60 -51.93 -0.39 1.92 16 28 H 0.07 1.54 7.76 -51.93 -0.40 1.14 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.84 7.00 -51.92 -0.36 0.47 16 33 H 0.09 1.69 5.64 -51.93 -0.29 1.39 16 LS Contribution 286.83 15.07 4.32 4.32 Total: -1.00 -29.51 286.83 -8.03 -37.54 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -3.66 Total: 1.21 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: -2.89 Total: -31.38 kcal Atomic # 7 Polarization: -26.46 SS G_CDS: 0.73 Total: -25.73 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.03 Total: -2.78 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.08 Total: 19.57 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.48 Total: -2.75 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.51 -8.03 -37.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260600943.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.714 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds