Wall clock time and date at job start Mon Mar 30 2020 07:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09010 * 109.47464 * 2 1 4 4 F 1.39901 * 109.47185 * 240.00060 * 2 1 3 5 5 C 1.50702 * 109.47502 * 120.00208 * 2 1 3 6 6 C 1.38261 * 119.99040 * 64.97124 * 5 2 1 7 7 C 1.38221 * 120.02351 * 179.97438 * 6 5 2 8 8 C 1.38236 * 120.01705 * 359.76702 * 7 6 5 9 9 C 1.50695 * 120.01277 * 180.25660 * 8 7 6 10 10 C 1.50697 * 115.55132 * 245.43024 * 9 8 7 11 11 H 1.08001 * 120.00098 * 243.24112 * 10 9 8 12 12 C 1.37882 * 120.00295 * 63.23788 * 10 9 8 13 13 N 1.31514 * 119.99253 * 6.33556 * 12 10 9 14 14 Si 1.86795 * 120.00116 * 186.33266 * 12 10 9 15 15 H 1.48499 * 109.46997 * 90.00567 * 14 12 10 16 16 H 1.48499 * 109.46954 * 210.00422 * 14 12 10 17 17 H 1.48500 * 109.47424 * 330.00147 * 14 12 10 18 18 C 1.53002 * 117.50166 * 99.75771 * 9 8 7 19 19 C 1.52998 * 117.49689 * 31.09714 * 9 8 7 20 20 C 1.38339 * 119.98023 * 0.53490 * 8 7 6 21 21 Cl 1.73605 * 120.01082 * 179.72093 * 20 8 7 22 22 C 1.38195 * 119.99305 * 245.00163 * 5 2 1 23 23 H 1.09005 * 109.46832 * 299.99912 * 1 2 3 24 24 H 1.08998 * 109.47470 * 59.99354 * 1 2 3 25 25 H 1.08993 * 109.47454 * 180.02562 * 1 2 3 26 26 H 1.07994 * 119.98925 * 0.02562 * 6 5 2 27 27 H 1.07999 * 119.99223 * 180.02562 * 7 6 5 28 28 H 0.97004 * 119.99348 * 174.99029 * 13 12 10 29 29 H 1.09003 * 117.49614 * 0.02562 * 18 9 8 30 30 H 1.08995 * 117.50034 * 145.01933 * 18 9 8 31 31 H 1.09000 * 117.49869 * 214.97646 * 19 9 8 32 32 H 1.08996 * 117.50367 * 0.02562 * 19 9 8 33 33 H 1.07997 * 120.00467 * 0.02562 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0324 -0.7104 1.2304 6 6 1.7851 -2.0604 1.3984 7 6 2.2461 -2.7128 2.5264 8 6 2.9588 -2.0170 3.4850 9 6 3.4662 -2.7296 4.7120 10 6 2.8583 -2.2880 6.0182 11 1 3.4791 -1.8352 6.7771 12 6 1.5093 -2.4620 6.2446 13 7 0.7769 -3.1239 5.3757 14 14 0.7223 -1.7576 7.7852 15 1 0.2453 -0.3783 7.5111 16 1 -0.4268 -2.6080 8.1872 17 1 1.7227 -1.7265 8.8823 18 6 4.9359 -3.1548 4.7248 19 6 3.8355 -4.2074 4.5685 20 6 3.2010 -0.6649 3.3204 21 17 4.0897 0.2112 4.5272 22 6 2.7395 -0.0124 2.1908 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.2324 -2.6054 0.6476 27 1 2.0530 -3.7673 2.6569 28 1 -0.1555 -3.3093 5.5689 29 1 5.5359 -2.9187 3.8459 30 1 5.4629 -3.1155 5.6781 31 1 3.6392 -4.8601 5.4191 32 1 3.7119 -4.6641 3.5866 33 1 2.9318 1.0422 2.0599 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260608560.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:39 Heat of formation + Delta-G solvation = -30.323820 kcal Electronic energy + Delta-G solvation = -18274.789891 eV Core-core repulsion = 15240.468374 eV Total energy + Delta-G solvation = -3034.321516 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.60024 -40.50385 -37.85441 -37.07003 -34.05360 -33.75578 -31.57396 -30.05181 -27.60658 -25.13763 -23.94565 -22.55843 -22.26759 -20.93378 -18.64545 -17.67025 -17.32631 -16.57463 -16.21690 -15.97573 -15.70491 -15.61166 -15.13367 -14.63427 -14.17501 -14.06273 -13.60377 -13.32974 -13.04730 -13.01444 -12.86766 -12.47630 -12.33434 -12.18205 -12.05850 -11.92763 -11.74084 -11.51963 -11.24347 -11.06962 -10.51201 -10.13286 -9.57913 -9.21858 -8.04718 -6.12519 0.40806 0.49631 1.39590 1.43486 1.50086 1.52393 2.43986 2.82153 3.16770 3.50314 3.57459 3.77845 3.91636 4.08268 4.21885 4.27249 4.31537 4.55498 4.56797 4.77866 4.82889 4.89981 4.95763 4.97681 5.09371 5.18930 5.22266 5.26616 5.53234 5.57504 5.67980 5.81278 5.86786 6.07772 6.42841 6.86755 7.50730 9.00489 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.019021 B = 0.007291 C = 0.006907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.690111 B = 3839.640239 C = 4052.670128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.141 3.859 3 H 0.114 0.886 4 F -0.221 7.221 5 C -0.140 4.140 6 C -0.104 4.104 7 C -0.098 4.098 8 C 0.002 3.998 9 C 0.058 3.942 10 C -0.485 4.485 11 H 0.052 0.948 12 C 0.034 3.966 13 N -0.892 5.892 14 Si 0.934 3.066 15 H -0.281 1.281 16 H -0.285 1.285 17 H -0.271 1.271 18 C -0.176 4.176 19 C -0.178 4.178 20 C -0.046 4.046 21 Cl -0.072 7.072 22 C -0.105 4.105 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.061 0.939 26 H 0.134 0.866 27 H 0.115 0.885 28 H 0.258 0.742 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.823 6.033 -9.280 11.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.105 3.895 3 H 0.132 0.868 4 F -0.202 7.202 5 C -0.141 4.141 6 C -0.122 4.122 7 C -0.117 4.117 8 C 0.000 4.000 9 C 0.058 3.942 10 C -0.522 4.522 11 H 0.070 0.930 12 C -0.167 4.167 13 N -0.529 5.529 14 Si 0.761 3.239 15 H -0.207 1.207 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.213 4.213 19 C -0.215 4.215 20 C -0.073 4.073 21 Cl -0.043 7.043 22 C -0.124 4.124 23 H 0.097 0.903 24 H 0.108 0.892 25 H 0.080 0.920 26 H 0.152 0.848 27 H 0.133 0.867 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.708 6.085 -9.256 11.100 hybrid contribution -0.489 -0.078 1.272 1.365 sum 0.218 6.007 -7.984 9.994 Atomic orbital electron populations 1.22363 0.92381 1.03803 1.04377 1.20426 0.95720 0.95544 0.77774 0.86824 1.92805 1.90608 1.83975 1.52808 1.20148 1.01718 0.94598 0.97645 1.21091 0.99307 0.94446 0.97323 1.20913 0.97327 1.00303 0.93133 1.19581 0.94526 0.92097 0.93759 1.17639 0.92420 0.92455 0.91689 1.20466 0.92818 1.40100 0.98841 0.93008 1.25474 0.97603 0.95231 0.98423 1.70053 1.07736 1.39446 1.35674 0.85929 0.78329 0.78487 0.81177 1.20710 1.21084 1.19597 1.22872 0.91888 1.05383 1.01112 1.22779 1.04649 0.94095 1.00020 1.20820 1.01550 0.92542 0.92357 1.98298 1.73935 1.75304 1.56772 1.20964 0.98320 1.00721 0.92379 0.90321 0.89236 0.92031 0.84828 0.86696 0.93303 0.90020 0.89994 0.91381 0.90573 0.83145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.55 9.51 71.98 0.68 -2.87 16 2 C 0.14 3.40 4.17 29.85 0.12 3.53 16 3 H 0.11 2.13 7.89 -2.38 -0.02 2.11 16 4 F -0.22 -6.07 16.93 44.97 0.76 -5.31 16 5 C -0.14 -4.44 5.04 -19.87 -0.10 -4.54 16 6 C -0.10 -3.65 9.15 22.27 0.20 -3.44 16 7 C -0.10 -4.11 9.14 22.27 0.20 -3.91 16 8 C 0.00 0.07 4.64 -19.84 -0.09 -0.02 16 9 C 0.06 2.76 0.82 -53.68 -0.04 2.71 16 10 C -0.48 -25.36 7.73 25.60 0.20 -25.17 16 11 H 0.05 2.77 7.82 -2.91 -0.02 2.75 16 12 C 0.03 1.81 5.37 84.66 0.45 2.27 16 13 N -0.89 -48.49 12.86 21.45 0.28 -48.22 16 14 Si 0.93 42.88 29.55 68.60 2.03 44.91 16 15 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 16 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 C -0.18 -7.37 9.94 30.62 0.30 -7.06 16 19 C -0.18 -7.94 9.43 30.62 0.29 -7.65 16 20 C -0.05 -1.87 6.27 22.33 0.14 -1.73 16 21 Cl -0.07 -2.82 27.12 -2.72 -0.07 -2.90 16 22 C -0.11 -3.54 9.46 22.29 0.21 -3.33 16 23 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 24 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.06 1.37 7.69 -2.39 -0.02 1.36 16 26 H 0.13 4.12 7.88 -2.91 -0.02 4.09 16 27 H 0.12 4.99 7.02 -2.91 -0.02 4.97 16 28 H 0.26 13.61 8.32 -92.71 -0.77 12.83 16 29 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 31 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 32 H 0.08 3.18 7.13 -2.39 -0.02 3.17 16 33 H 0.15 4.05 7.95 -2.91 -0.02 4.03 16 Total: -1.00 -57.30 300.87 6.68 -50.62 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 1.11 Total: 12.10 kcal Atomic # 6 Polarization: -53.79 SS G_CDS: 2.58 Total: -51.21 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: 0.28 Total: -48.22 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.76 Total: -5.31 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 17 Polarization: -2.82 SS G_CDS: -0.07 Total: -2.90 kcal Total: -57.30 6.68 -50.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260608560.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.300 kcal (2) G-P(sol) polarization free energy of solvation -57.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds