Wall clock time and date at job start Mon Mar 30 2020 06:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36008 * 117.00089 * 2 1 4 4 C 1.38363 * 119.91202 * 0.27448 * 3 2 1 5 5 C 1.38244 * 120.29909 * 180.28097 * 4 3 2 6 6 C 1.50703 * 120.10387 * 179.53528 * 5 4 3 7 7 C 1.50701 * 109.47064 * 264.72574 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99913 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99734 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47432 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46890 * 120.00210 * 11 9 7 14 14 H 1.48501 * 109.47062 * 240.00257 * 11 9 7 15 15 C 1.38456 * 119.79024 * 359.26351 * 5 4 3 16 16 Cl 1.73602 * 119.97293 * 180.24814 * 15 5 4 17 17 C 1.37931 * 120.05196 * 0.27039 * 15 5 4 18 18 C 1.38725 * 120.80609 * 0.37681 * 17 15 5 19 19 O 1.36235 * 111.24066 * 178.97766 * 18 17 15 20 20 C 1.43782 * 109.17335 * 19.33946 * 19 18 17 21 21 C 1.51652 * 132.12561 * 180.89990 * 17 15 5 22 22 H 1.08995 * 109.47004 * 299.99874 * 1 2 3 23 23 H 1.09003 * 109.46683 * 60.00345 * 1 2 3 24 24 H 1.09005 * 109.47134 * 179.97438 * 1 2 3 25 25 H 1.08009 * 119.85411 * 0.02701 * 4 3 2 26 26 H 1.09002 * 109.47152 * 144.72666 * 6 5 4 27 27 H 1.09001 * 109.46980 * 24.72767 * 6 5 4 28 28 H 0.97002 * 119.99768 * 179.97438 * 10 9 7 29 29 H 1.08994 * 110.75821 * 90.45141 * 20 19 18 30 30 H 1.09002 * 110.75235 * 213.62925 * 20 19 18 31 31 H 1.08998 * 110.93342 * 282.54862 * 21 17 15 32 32 H 1.09001 * 110.93443 * 46.22479 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2912 2.3711 0.0057 5 6 1.9105 3.6071 -0.0001 6 6 1.0834 4.8669 -0.0043 7 6 0.9153 5.3526 -1.4210 8 1 1.3623 4.8038 -2.2367 9 6 0.1900 6.4972 -1.6758 10 7 -0.3546 7.1653 -0.6826 11 14 -0.0189 7.0989 -3.4319 12 1 0.6852 6.1763 -4.3584 13 1 -1.4635 7.1358 -3.7738 14 1 0.5551 8.4625 -3.5595 15 6 3.2929 3.6838 0.0038 16 17 4.0755 5.2335 0.0030 17 6 4.0488 2.5301 0.0077 18 6 3.4415 1.2829 0.0001 19 8 4.3671 0.2833 -0.0169 20 6 5.6316 0.8031 0.4283 21 6 5.5469 2.2956 0.0300 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 0.2128 2.3102 0.0107 26 1 1.5861 5.6335 0.5854 27 1 0.1042 4.6601 0.4275 28 1 -0.8646 7.9707 -0.8619 29 1 5.7344 0.6967 1.5081 30 1 6.4552 0.3091 -0.0871 31 1 5.9817 2.4609 -0.9557 32 1 6.0287 2.9260 0.7774 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260622992.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:03 Heat of formation + Delta-G solvation = -57.295791 kcal Electronic energy + Delta-G solvation = -18158.280284 eV Core-core repulsion = 15110.416386 eV Total energy + Delta-G solvation = -3047.863898 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.90150 -38.77982 -37.04076 -35.37598 -33.22714 -31.99760 -30.65058 -28.53871 -27.63626 -26.43552 -23.57298 -22.82556 -21.28034 -20.44734 -17.49643 -16.91692 -16.71928 -16.32998 -16.03197 -15.26876 -14.93478 -14.60986 -13.68214 -13.27000 -13.20713 -13.04651 -12.73023 -12.19783 -11.92981 -11.73500 -11.48009 -11.38537 -11.19492 -11.08876 -10.94856 -10.65947 -10.59509 -10.17843 -9.97384 -9.57413 -9.26163 -8.42910 -8.06035 -7.29125 -6.05077 -4.07995 1.54394 1.77551 2.85503 3.28915 3.36830 3.41926 3.43651 3.56218 3.99672 4.44930 4.63180 4.74451 5.06766 5.21866 5.30053 5.30533 5.37452 5.48514 5.57707 5.58787 5.70254 5.83263 5.89672 6.03901 6.28640 6.66794 6.72801 6.93821 7.09618 7.48878 7.64957 7.74529 7.89964 8.26811 8.95357 9.55194 11.04945 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.019230 B = 0.006963 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.737916 B = 4020.236754 C = 4973.425308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.115 3.885 4 C -0.171 4.171 5 C -0.010 4.010 6 C 0.049 3.951 7 C -0.503 4.503 8 H 0.057 0.943 9 C 0.061 3.939 10 N -0.893 5.893 11 Si 0.892 3.108 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.283 1.283 15 C -0.024 4.024 16 Cl -0.061 7.061 17 C -0.133 4.133 18 C 0.054 3.946 19 O -0.299 6.299 20 C 0.053 3.947 21 C -0.104 4.104 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.095 0.905 25 H 0.143 0.857 26 H 0.043 0.957 27 H 0.031 0.969 28 H 0.261 0.739 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.597 -11.089 3.155 13.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.230 6.230 3 C 0.070 3.930 4 C -0.190 4.190 5 C -0.011 4.011 6 C 0.013 3.987 7 C -0.541 4.541 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.720 3.280 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.209 1.209 15 C -0.051 4.051 16 Cl -0.032 7.032 17 C -0.134 4.134 18 C 0.009 3.991 19 O -0.214 6.214 20 C -0.023 4.023 21 C -0.141 4.141 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.114 0.886 25 H 0.161 0.839 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.626 -11.221 3.133 13.924 hybrid contribution -0.260 0.836 -0.964 1.302 sum 7.366 -10.384 2.169 12.915 Atomic orbital electron populations 1.23050 0.78617 1.03413 1.01825 1.86096 1.21124 1.26467 1.89336 1.18216 0.87925 0.85153 1.01712 1.20885 1.00215 0.90053 1.07859 1.20368 0.91597 0.97376 0.91777 1.18416 0.93867 0.87905 0.98532 1.20950 1.32628 1.09178 0.91385 0.92476 1.24938 0.95556 0.96444 0.97077 1.69956 1.34844 1.17647 1.30766 0.86525 0.77789 0.78809 0.84911 1.19647 1.20989 1.20912 1.19827 0.91988 0.85162 1.08112 1.98330 1.80145 1.27915 1.96817 1.20186 0.95339 0.91536 1.06372 1.18212 0.87670 0.86663 1.06560 1.86872 1.18302 1.33281 1.82928 1.23743 0.85468 0.92993 1.00060 1.21753 0.92207 0.96504 1.03648 0.92568 0.92348 0.88632 0.83943 0.93851 0.95120 0.92907 0.90957 0.87945 0.88983 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -5.33 10.50 -19.78 -0.21 -5.54 16 3 C 0.12 2.14 6.71 -39.00 -0.26 1.87 16 4 C -0.17 -3.31 8.65 -39.53 -0.34 -3.65 16 5 C -0.01 -0.22 5.08 -104.54 -0.53 -0.75 16 6 C 0.05 1.24 4.62 -29.03 -0.13 1.11 16 7 C -0.50 -13.74 9.09 -34.44 -0.31 -14.05 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 11 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 C -0.02 -0.48 6.30 -39.61 -0.25 -0.73 16 16 Cl -0.06 -1.20 27.26 -51.86 -1.41 -2.62 16 17 C -0.13 -2.35 6.13 -104.09 -0.64 -2.99 16 18 C 0.05 0.99 6.97 -38.86 -0.27 0.71 16 19 O -0.30 -4.98 11.11 -20.50 -0.23 -5.21 16 20 C 0.05 0.63 8.01 38.05 0.30 0.93 16 21 C -0.10 -1.38 6.93 -26.52 -0.18 -1.56 16 22 H 0.06 0.65 7.64 -51.93 -0.40 0.25 16 23 H 0.06 0.72 7.67 -51.93 -0.40 0.32 16 24 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.14 2.52 6.26 -52.48 -0.33 2.19 16 26 H 0.04 1.15 7.14 -51.93 -0.37 0.78 16 27 H 0.03 0.79 8.05 -51.93 -0.42 0.37 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 290.29 15.07 4.37 4.37 Total: -1.00 -31.04 290.29 -7.05 -38.09 By element: Atomic # 1 Polarization: -0.61 SS G_CDS: -3.57 Total: -4.18 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -1.73 Total: -16.19 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 0.74 Total: -25.14 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -0.44 Total: -10.75 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -1.41 Total: -2.62 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.04 -7.05 -38.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260622992.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.204 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds