Wall clock time and date at job start Mon Mar 30 2020 07:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38250 * 119.99939 * 2 1 4 4 C 1.38219 * 120.00072 * 180.27483 * 3 2 1 5 5 C 1.50701 * 120.00396 * 179.76592 * 4 3 2 6 6 C 1.52992 * 109.46857 * 269.97821 * 5 4 3 7 7 C 1.50701 * 109.46857 * 179.97438 * 6 5 4 8 8 H 1.07994 * 120.00578 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99948 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00005 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 119.99874 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47125 * 90.00414 * 11 9 7 13 13 H 1.48499 * 109.46926 * 209.99549 * 11 9 7 14 14 H 1.48493 * 109.47396 * 330.00247 * 11 9 7 15 15 C 1.38255 * 119.99672 * 359.73841 * 4 3 2 16 16 C 1.38212 * 120.00380 * 359.97438 * 15 4 3 17 17 C 1.38211 * 119.99885 * 179.73751 * 2 1 3 18 18 S 1.76197 * 120.00421 * 0.02562 * 17 2 1 19 19 C 1.81399 * 104.44807 * 294.72359 * 18 17 2 20 20 O 1.42104 * 104.28201 * 178.65419 * 18 17 2 21 21 O 1.42102 * 104.27661 * 50.79075 * 18 17 2 22 22 H 1.08996 * 109.47669 * 270.25555 * 1 2 3 23 23 H 1.08997 * 109.47436 * 30.25975 * 1 2 3 24 24 H 1.09008 * 109.47225 * 150.25952 * 1 2 3 25 25 H 1.07999 * 120.00456 * 0.03580 * 3 2 1 26 26 H 1.09001 * 109.46701 * 29.97344 * 5 4 3 27 27 H 1.08993 * 109.47264 * 149.97017 * 5 4 3 28 28 H 1.09001 * 109.47075 * 299.99294 * 6 5 4 29 29 H 1.09005 * 109.47948 * 59.99993 * 6 5 4 30 30 H 0.97000 * 120.00035 * 179.97438 * 10 9 7 31 31 H 1.08003 * 119.99991 * 180.02562 * 15 4 3 32 32 H 1.08000 * 120.00437 * 179.97438 * 16 15 4 33 33 H 1.09001 * 109.47190 * 299.99593 * 19 18 17 34 34 H 1.09004 * 109.47089 * 59.99727 * 19 18 17 35 35 H 1.09004 * 109.47568 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0057 5 6 4.3339 2.5024 -0.0111 6 6 4.5834 2.9413 -1.4553 7 6 5.3364 4.2467 -1.4606 8 1 5.6093 4.7165 -0.5274 9 6 5.6769 4.8413 -2.6572 10 7 6.3336 5.9807 -2.6619 11 14 5.2055 4.0283 -4.2716 12 1 3.8675 4.5121 -4.6972 13 1 6.2094 4.3718 -5.3104 14 1 5.1646 2.5550 -4.0905 15 6 4.2716 0.0000 -0.0060 16 6 3.5806 -1.1970 0.0000 17 6 2.1980 -1.1969 0.0055 18 16 1.3171 -2.7229 0.0118 19 6 0.4539 -2.7406 1.6072 20 8 2.3342 -3.7149 -0.0158 21 8 0.3884 -2.5958 -1.0562 22 1 -0.3634 0.0046 1.0276 23 1 -0.3634 0.8876 -0.5178 24 1 -0.3634 -0.8924 -0.5098 25 1 1.6583 2.1326 0.0006 26 1 3.7467 3.2630 0.5035 27 1 5.2882 2.3731 0.4994 28 1 5.1706 2.1807 -1.9699 29 1 3.6290 3.0707 -1.9659 30 1 6.5735 6.3988 -3.5036 31 1 5.3517 0.0000 -0.0101 32 1 4.1206 -2.1323 -0.0007 33 1 1.1833 -2.6885 2.4155 34 1 -0.2166 -1.8833 1.6670 35 1 -0.1239 -3.6604 1.6975 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260629187.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:15 Heat of formation + Delta-G solvation = -57.642564 kcal Electronic energy + Delta-G solvation = -18024.124299 eV Core-core repulsion = 15114.122164 eV Total energy + Delta-G solvation = -2910.002134 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.49993 -37.32987 -36.09223 -34.70155 -32.84496 -32.03413 -30.00735 -29.53243 -27.03634 -25.64181 -22.45579 -21.61133 -20.10219 -19.08208 -17.58630 -16.87777 -16.54455 -16.22617 -15.10822 -14.86143 -14.41931 -14.29598 -14.22761 -13.59066 -13.35044 -13.23669 -12.96697 -12.83819 -12.60322 -12.27489 -12.18704 -12.11093 -11.76066 -11.44114 -11.26534 -11.16542 -10.93664 -10.65359 -10.23302 -10.00076 -9.77723 -9.28459 -8.79618 -8.68751 -8.59515 -6.10923 -4.10256 -0.07906 0.95738 1.41928 2.74990 3.27891 3.35900 3.40610 3.46975 3.76618 4.01412 4.40387 4.47380 4.61225 4.68379 4.87233 5.05451 5.23271 5.24980 5.32362 5.38338 5.44991 5.56451 5.72231 5.87405 5.98750 6.19416 6.23274 6.27894 6.39945 6.64319 6.74056 7.02718 7.16207 7.30322 7.69590 8.44565 8.92548 9.51066 11.02147 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.033442 B = 0.004324 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.058480 B = 6474.573425 C = 6542.789422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.010 3.990 3 C -0.144 4.144 4 C -0.001 4.001 5 C -0.080 4.080 6 C -0.005 4.005 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.069 3.931 10 N -0.901 5.901 11 Si 0.877 3.123 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.265 1.265 15 C -0.147 4.147 16 C -0.018 4.018 17 C -0.678 4.678 18 S 2.503 3.497 19 C -0.655 4.655 20 O -0.945 6.945 21 O -0.938 6.938 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.101 0.899 25 H 0.131 0.869 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.019 0.981 29 H 0.014 0.986 30 H 0.264 0.736 31 H 0.132 0.868 32 H 0.141 0.859 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.665 -16.770 9.739 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.009 3.991 3 C -0.162 4.162 4 C -0.001 4.001 5 C -0.117 4.117 6 C -0.043 4.043 7 C -0.562 4.562 8 H 0.092 0.908 9 C -0.132 4.132 10 N -0.540 5.540 11 Si 0.704 3.296 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.190 1.190 15 C -0.166 4.166 16 C -0.037 4.037 17 C -0.766 4.766 18 S 2.684 3.316 19 C -0.805 4.805 20 O -0.942 6.942 21 O -0.936 6.936 22 H 0.098 0.902 23 H 0.105 0.895 24 H 0.119 0.881 25 H 0.149 0.851 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.037 0.963 29 H 0.032 0.968 30 H 0.074 0.926 31 H 0.150 0.850 32 H 0.159 0.841 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.598 -17.256 8.971 23.173 hybrid contribution -0.005 0.570 -0.361 0.675 sum -12.603 -16.686 8.610 22.614 Atomic orbital electron populations 1.21651 0.91102 1.06914 1.03249 1.19454 0.95277 0.92085 0.92277 1.21129 0.94053 0.97638 1.03427 1.20778 0.93977 0.96738 0.88651 1.20824 0.98899 0.91005 1.01017 1.19553 0.96778 0.97236 0.90703 1.21087 1.35925 1.04633 0.94601 0.90848 1.24997 0.94470 0.94607 0.99148 1.69904 1.39737 1.17404 1.26916 0.86813 0.78508 0.80631 0.83602 1.20182 1.21218 1.18963 1.21258 1.00631 0.91744 1.02991 1.20898 0.91811 0.99242 0.91776 1.29951 1.05953 1.17734 1.23000 1.04919 0.75221 0.74329 0.77087 1.30303 1.15062 1.11766 1.23329 1.93545 1.56524 1.57386 1.86747 1.93535 1.64223 1.85939 1.49860 0.90221 0.89502 0.88063 0.85097 0.91058 0.90958 0.96280 0.96769 0.92608 0.84988 0.84134 0.84875 0.84902 0.85174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 8.48 36.00 0.31 -1.39 16 2 C 0.01 0.13 5.87 -104.63 -0.61 -0.48 16 3 C -0.14 -2.14 9.36 -39.58 -0.37 -2.51 16 4 C 0.00 -0.02 5.13 -104.62 -0.54 -0.56 16 5 C -0.08 -1.51 5.28 -27.89 -0.15 -1.66 16 6 C -0.01 -0.13 4.02 -27.89 -0.11 -0.24 16 7 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 10 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 11 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 14 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 15 C -0.15 -2.25 9.70 -39.58 -0.38 -2.63 16 16 C -0.02 -0.25 9.50 -39.58 -0.38 -0.63 16 17 C -0.68 -8.74 5.58 -39.58 -0.22 -8.96 16 18 S 2.50 26.13 5.21 -107.50 -0.56 25.57 16 19 C -0.65 -3.65 10.60 101.05 1.07 -2.58 16 20 O -0.94 -12.50 16.74 -57.54 -0.96 -13.46 16 21 O -0.94 -12.39 15.34 -57.54 -0.88 -13.28 16 22 H 0.08 0.53 7.12 -51.93 -0.37 0.16 16 23 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 24 H 0.10 1.00 4.88 -51.92 -0.25 0.75 16 25 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 26 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 27 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 28 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 29 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 32 H 0.14 1.71 7.21 -52.49 -0.38 1.33 16 33 H 0.13 0.58 8.14 -51.92 -0.42 0.15 16 34 H 0.13 0.57 6.04 -51.92 -0.31 0.25 16 35 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 LS Contribution 301.08 15.07 4.54 4.54 Total: -1.00 -35.18 301.08 -8.20 -43.38 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -4.62 Total: -2.40 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: -1.82 Total: -34.73 kcal Atomic # 7 Polarization: -27.54 SS G_CDS: 0.77 Total: -26.76 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -1.85 Total: -26.74 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Atomic # 16 Polarization: 26.13 SS G_CDS: -0.56 Total: 25.57 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.18 -8.20 -43.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260629187.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.265 kcal (2) G-P(sol) polarization free energy of solvation -35.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds