Wall clock time and date at job start Mon Mar 30 2020 07:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47404 * 2 1 4 4 C 1.50705 * 109.46964 * 120.00114 * 2 1 3 5 5 H 1.08001 * 119.99726 * 2.31844 * 4 2 1 6 6 C 1.37869 * 120.00031 * 182.32188 * 4 2 1 7 7 N 1.31514 * 119.99958 * 185.88600 * 6 4 2 8 8 Si 1.86798 * 120.00147 * 5.88155 * 6 4 2 9 9 H 1.48503 * 109.47123 * 91.52662 * 8 6 4 10 10 H 1.48498 * 109.47253 * 211.52470 * 8 6 4 11 11 H 1.48498 * 109.46987 * 331.52601 * 8 6 4 12 12 C 1.50696 * 109.47167 * 239.99834 * 2 1 3 13 13 C 1.38265 * 119.99962 * 246.97932 * 12 2 1 14 14 C 1.38217 * 119.99565 * 179.78880 * 13 12 2 15 15 C 1.38250 * 120.00128 * 0.44045 * 14 13 12 16 16 C 1.38218 * 120.00230 * 359.81261 * 15 14 13 17 17 S 1.76195 * 119.99890 * 180.02562 * 16 15 14 18 18 C 1.81404 * 104.45091 * 269.97571 * 17 16 15 19 19 O 1.42099 * 104.27990 * 26.05095 * 17 16 15 20 20 O 1.42101 * 104.27836 * 153.90406 * 17 16 15 21 21 C 1.38216 * 120.00025 * 67.24888 * 12 2 1 22 22 H 1.08995 * 109.47150 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46404 * 60.00080 * 1 2 3 24 24 H 1.08993 * 109.46918 * 300.00480 * 1 2 3 25 25 H 1.09008 * 109.47026 * 65.85650 * 3 2 1 26 26 H 1.09005 * 109.47318 * 185.85156 * 3 2 1 27 27 H 1.09003 * 109.46981 * 305.85722 * 3 2 1 28 28 H 0.97000 * 120.00444 * 179.97438 * 7 6 4 29 29 H 1.07993 * 120.00003 * 359.97438 * 13 12 2 30 30 H 1.08002 * 119.99668 * 180.26677 * 14 13 12 31 31 H 1.08006 * 119.99820 * 179.83067 * 15 14 13 32 32 H 1.09001 * 109.46671 * 60.00085 * 18 17 16 33 33 H 1.08998 * 109.47343 * 180.02562 * 18 17 16 34 34 H 1.09007 * 109.46850 * 300.00396 * 18 17 16 35 35 H 1.08000 * 119.99806 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 1.3312 -1.1535 1.9222 6 6 3.3869 -0.7947 1.4732 7 7 3.8308 -1.5119 2.4822 8 14 4.5917 0.1097 0.3687 9 1 4.8601 1.4586 0.9289 10 1 5.8620 -0.6555 0.2906 11 1 4.0109 0.2450 -0.9912 12 6 2.0324 -0.7104 -1.2304 13 6 2.7043 -1.9127 -1.1086 14 6 3.1612 -2.5664 -2.2375 15 6 2.9543 -2.0136 -3.4877 16 6 2.2872 -0.8092 -3.6091 17 16 2.0230 -0.1051 -5.2025 18 6 3.4821 0.9350 -5.4854 19 8 2.0270 -1.2201 -6.0834 20 8 0.8616 0.6979 -5.0426 21 6 1.8263 -0.1574 -2.4802 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5139 -0.8901 24 1 -0.3633 0.5139 0.8899 25 1 1.7649 1.9251 0.9378 26 1 3.1251 1.4442 -0.1048 27 1 1.5937 1.9857 -0.8329 28 1 4.7838 -1.5716 2.6528 29 1 2.8695 -2.3424 -0.1317 30 1 3.6823 -3.5076 -2.1427 31 1 3.3137 -2.5231 -4.3696 32 1 4.3796 0.3171 -5.4572 33 1 3.4020 1.4159 -6.4603 34 1 3.5411 1.6972 -4.7083 35 1 1.3049 0.7836 -2.5750 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260631117.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:11 Heat of formation + Delta-G solvation = -32.241092 kcal Electronic energy + Delta-G solvation = -19150.469753 eV Core-core repulsion = 16241.569109 eV Total energy + Delta-G solvation = -2908.900644 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.29795 -36.98381 -35.85396 -35.53278 -32.13405 -30.73869 -29.53682 -29.27879 -26.62209 -25.41354 -22.63748 -22.15098 -19.55172 -18.56791 -17.61882 -16.15828 -16.06964 -15.80093 -15.46127 -15.16121 -14.18723 -13.91073 -13.43002 -13.32821 -13.25108 -13.12931 -12.80280 -12.45624 -12.06374 -11.98607 -11.90761 -11.74791 -11.47562 -11.30602 -11.02703 -10.85906 -10.43341 -10.39233 -10.12428 -9.96910 -9.33481 -9.17188 -8.68928 -8.63586 -7.93237 -6.26703 -4.26480 0.17571 1.39242 1.87835 3.01557 3.16117 3.26989 3.29899 3.83844 4.20092 4.23864 4.27998 4.69621 4.88526 5.02147 5.32767 5.33697 5.54355 5.70655 5.89734 5.97715 6.03198 6.16961 6.23419 6.32412 6.43277 6.50744 6.62353 6.64359 6.70569 6.91317 7.10109 7.14507 7.34332 7.51655 7.69887 8.36536 8.79527 9.35020 10.84569 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.026151 B = 0.007497 C = 0.007100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.428888 B = 3733.874520 C = 3942.828174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.061 3.939 3 C -0.146 4.146 4 C -0.511 4.511 5 H 0.080 0.920 6 C 0.077 3.923 7 N -0.891 5.891 8 Si 0.864 3.136 9 H -0.284 1.284 10 H -0.299 1.299 11 H -0.242 1.242 12 C -0.055 4.055 13 C -0.049 4.049 14 C -0.152 4.152 15 C -0.048 4.048 16 C -0.666 4.666 17 S 2.500 3.500 18 C -0.653 4.653 19 O -0.947 6.947 20 O -0.943 6.943 21 C -0.042 4.042 22 H 0.048 0.952 23 H 0.035 0.965 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.039 0.961 27 H 0.036 0.964 28 H 0.266 0.734 29 H 0.158 0.842 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.673 3.615 -12.875 13.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.060 3.940 3 C -0.203 4.203 4 C -0.549 4.549 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.695 3.305 9 H -0.211 1.211 10 H -0.228 1.228 11 H -0.167 1.167 12 C -0.057 4.057 13 C -0.067 4.067 14 C -0.171 4.171 15 C -0.068 4.068 16 C -0.755 4.755 17 S 2.681 3.319 18 C -0.802 4.802 19 O -0.944 6.944 20 O -0.940 6.940 21 C -0.061 4.061 22 H 0.067 0.933 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.176 0.824 30 H 0.141 0.859 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.127 3.420 -13.320 13.753 hybrid contribution 1.647 0.538 0.238 1.749 sum 1.775 3.958 -13.082 13.782 Atomic orbital electron populations 1.21686 0.95407 1.00780 0.99817 1.17679 0.93240 0.91763 0.91269 1.22318 0.99550 0.97832 1.00555 1.20894 0.92537 1.35437 1.06029 0.90179 1.25041 0.98205 0.94386 0.94909 1.69904 1.14688 1.38888 1.29331 0.87439 0.80343 0.79516 0.83211 1.21114 1.22752 1.16726 1.20775 0.94842 0.94916 0.95122 1.22160 0.90780 0.93627 1.00086 1.21353 1.02297 1.00671 0.92730 1.20702 0.94823 0.93038 0.98187 1.30067 1.16874 1.08666 1.19864 1.04936 0.76588 0.75516 0.74824 1.30248 1.21819 1.16629 1.11545 1.93547 1.86885 1.49708 1.64254 1.93562 1.43568 1.70921 1.85957 1.20830 0.95252 0.98586 0.91440 0.93319 0.94550 0.92855 0.92163 0.94219 0.94471 0.92405 0.82449 0.85905 0.85296 0.85140 0.85472 0.85035 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 8.29 37.16 0.31 -2.00 16 2 C 0.06 1.33 0.59 -156.81 -0.09 1.23 16 3 C -0.15 -2.95 7.38 37.16 0.27 -2.67 16 4 C -0.51 -13.04 7.47 -34.44 -0.26 -13.30 16 5 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 6 C 0.08 2.04 4.05 -17.82 -0.07 1.97 16 7 N -0.89 -25.29 13.96 55.43 0.77 -24.52 16 8 Si 0.86 20.31 22.12 -169.99 -3.76 16.55 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.24 -5.27 4.48 56.52 0.25 -5.02 16 12 C -0.06 -1.14 2.54 -104.62 -0.27 -1.41 16 13 C -0.05 -1.02 6.77 -39.58 -0.27 -1.29 16 14 C -0.15 -2.69 10.05 -39.58 -0.40 -3.09 16 15 C -0.05 -0.79 9.47 -39.58 -0.37 -1.16 16 16 C -0.67 -10.94 5.66 -39.58 -0.22 -11.16 16 17 S 2.50 33.33 5.80 -107.50 -0.62 32.70 16 18 C -0.65 -5.80 10.80 101.05 1.09 -4.71 16 19 O -0.95 -14.73 17.13 -57.54 -0.99 -15.71 16 20 O -0.94 -15.24 17.13 -57.54 -0.99 -16.23 16 21 C -0.04 -0.78 8.08 -39.58 -0.32 -1.10 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.04 0.63 7.86 -51.93 -0.41 0.22 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 26 H 0.04 0.83 2.78 -51.93 -0.14 0.69 16 27 H 0.04 0.64 7.26 -51.93 -0.38 0.26 16 28 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.16 3.63 5.53 -52.49 -0.29 3.34 16 30 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.13 1.74 7.57 -52.48 -0.40 1.34 16 32 H 0.13 0.99 8.14 -51.92 -0.42 0.56 16 33 H 0.13 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.13 1.08 8.14 -51.92 -0.42 0.66 16 35 H 0.13 2.21 6.72 -52.49 -0.35 1.86 16 LS Contribution 286.88 15.07 4.32 4.32 Total: -1.00 -31.95 286.88 -6.49 -38.44 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -4.63 Total: 3.13 kcal Atomic # 6 Polarization: -38.09 SS G_CDS: -0.60 Total: -38.69 kcal Atomic # 7 Polarization: -25.29 SS G_CDS: 0.77 Total: -24.52 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -1.97 Total: -31.94 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -3.76 Total: 16.55 kcal Atomic # 16 Polarization: 33.33 SS G_CDS: -0.62 Total: 32.70 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.95 -6.49 -38.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260631117.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.198 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds