Wall clock time and date at job start Mon Mar 30 2020 07:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47404 * 2 1 4 4 C 1.50705 * 109.46964 * 120.00114 * 2 1 3 5 5 H 1.08001 * 119.99726 * 2.31844 * 4 2 1 6 6 C 1.37869 * 120.00031 * 182.32188 * 4 2 1 7 7 N 1.31514 * 119.99958 * 185.88600 * 6 4 2 8 8 Si 1.86798 * 120.00147 * 5.88155 * 6 4 2 9 9 H 1.48503 * 109.47123 * 91.52662 * 8 6 4 10 10 H 1.48498 * 109.47253 * 211.52470 * 8 6 4 11 11 H 1.48498 * 109.46987 * 331.52601 * 8 6 4 12 12 C 1.50696 * 109.47167 * 239.99834 * 2 1 3 13 13 C 1.38265 * 119.99962 * 246.97932 * 12 2 1 14 14 C 1.38217 * 119.99565 * 179.78880 * 13 12 2 15 15 C 1.38250 * 120.00128 * 0.44045 * 14 13 12 16 16 C 1.38218 * 120.00230 * 359.81261 * 15 14 13 17 17 S 1.76195 * 119.99890 * 180.02562 * 16 15 14 18 18 C 1.81404 * 104.45091 * 269.97571 * 17 16 15 19 19 O 1.42099 * 104.27990 * 26.05095 * 17 16 15 20 20 O 1.42101 * 104.27836 * 153.90406 * 17 16 15 21 21 C 1.38216 * 120.00025 * 67.24888 * 12 2 1 22 22 H 1.08995 * 109.47150 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46404 * 60.00080 * 1 2 3 24 24 H 1.08993 * 109.46918 * 300.00480 * 1 2 3 25 25 H 1.09008 * 109.47026 * 65.85650 * 3 2 1 26 26 H 1.09005 * 109.47318 * 185.85156 * 3 2 1 27 27 H 1.09003 * 109.46981 * 305.85722 * 3 2 1 28 28 H 0.97000 * 120.00444 * 179.97438 * 7 6 4 29 29 H 1.07993 * 120.00003 * 359.97438 * 13 12 2 30 30 H 1.08002 * 119.99668 * 180.26677 * 14 13 12 31 31 H 1.08006 * 119.99820 * 179.83067 * 15 14 13 32 32 H 1.09001 * 109.46671 * 60.00085 * 18 17 16 33 33 H 1.08998 * 109.47343 * 180.02562 * 18 17 16 34 34 H 1.09007 * 109.46850 * 300.00396 * 18 17 16 35 35 H 1.08000 * 119.99806 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 1.3312 -1.1535 1.9222 6 6 3.3869 -0.7947 1.4732 7 7 3.8308 -1.5119 2.4822 8 14 4.5917 0.1097 0.3687 9 1 4.8601 1.4586 0.9289 10 1 5.8620 -0.6555 0.2906 11 1 4.0109 0.2450 -0.9912 12 6 2.0324 -0.7104 -1.2304 13 6 2.7043 -1.9127 -1.1086 14 6 3.1612 -2.5664 -2.2375 15 6 2.9543 -2.0136 -3.4877 16 6 2.2872 -0.8092 -3.6091 17 16 2.0230 -0.1051 -5.2025 18 6 3.4821 0.9350 -5.4854 19 8 2.0270 -1.2201 -6.0834 20 8 0.8616 0.6979 -5.0426 21 6 1.8263 -0.1574 -2.4802 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5139 -0.8901 24 1 -0.3633 0.5139 0.8899 25 1 1.7649 1.9251 0.9378 26 1 3.1251 1.4442 -0.1048 27 1 1.5937 1.9857 -0.8329 28 1 4.7838 -1.5716 2.6528 29 1 2.8695 -2.3424 -0.1317 30 1 3.6823 -3.5076 -2.1427 31 1 3.3137 -2.5231 -4.3696 32 1 4.3796 0.3171 -5.4572 33 1 3.4020 1.4159 -6.4603 34 1 3.5411 1.6972 -4.7083 35 1 1.3049 0.7836 -2.5750 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260631117.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:10 Heat of formation + Delta-G solvation = -55.845195 kcal Electronic energy + Delta-G solvation = -19151.493303 eV Core-core repulsion = 16241.569109 eV Total energy + Delta-G solvation = -2909.924195 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.77364 -38.09006 -37.18052 -36.89541 -34.08567 -32.13396 -30.75894 -30.22407 -28.22475 -27.29899 -24.04832 -23.61573 -21.08713 -19.84449 -19.06446 -17.72876 -17.16469 -17.09729 -16.79915 -16.72690 -15.61365 -15.42392 -14.94429 -14.76719 -14.55100 -14.16607 -13.99079 -13.92755 -13.62141 -13.17269 -13.10637 -13.08364 -12.87545 -12.79811 -12.57492 -12.17390 -12.03896 -11.99830 -11.67805 -11.54201 -11.03242 -10.95893 -10.62074 -10.08851 -9.41961 -8.32712 -6.34664 -0.79395 0.01063 0.46468 1.29124 1.35984 1.42372 1.96197 2.29690 2.62542 3.01961 3.10176 3.25773 3.93298 4.00853 4.13665 4.23187 4.25573 4.39531 4.52557 4.55204 4.60147 4.73186 4.86721 4.93682 4.97549 5.05418 5.08885 5.14267 5.16694 5.41929 5.50888 5.54509 5.68930 5.94699 6.08604 6.33753 6.72928 7.30356 8.82628 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.026151 B = 0.007497 C = 0.007100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.428888 B = 3733.874520 C = 3942.828174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.055 3.945 3 C -0.147 4.147 4 C -0.506 4.506 5 H 0.036 0.964 6 C 0.033 3.967 7 N -0.943 5.943 8 Si 0.915 3.085 9 H -0.284 1.284 10 H -0.310 1.310 11 H -0.209 1.209 12 C -0.076 4.076 13 C -0.080 4.080 14 C -0.153 4.153 15 C -0.045 4.045 16 C -0.666 4.666 17 S 2.511 3.489 18 C -0.627 4.627 19 O -0.972 6.972 20 O -0.974 6.974 21 C -0.049 4.049 22 H 0.035 0.965 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.032 0.968 27 H 0.073 0.927 28 H 0.264 0.736 29 H 0.121 0.879 30 H 0.143 0.857 31 H 0.161 0.839 32 H 0.153 0.847 33 H 0.160 0.840 34 H 0.147 0.853 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.532 5.540 -16.742 17.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.054 3.946 3 C -0.203 4.203 4 C -0.544 4.544 5 H 0.054 0.946 6 C -0.165 4.165 7 N -0.582 5.582 8 Si 0.744 3.256 9 H -0.211 1.211 10 H -0.239 1.239 11 H -0.132 1.132 12 C -0.078 4.078 13 C -0.098 4.098 14 C -0.172 4.172 15 C -0.064 4.064 16 C -0.751 4.751 17 S 2.694 3.306 18 C -0.781 4.781 19 O -0.969 6.969 20 O -0.972 6.972 21 C -0.068 4.068 22 H 0.055 0.945 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.139 0.861 30 H 0.161 0.839 31 H 0.179 0.821 32 H 0.171 0.829 33 H 0.179 0.821 34 H 0.166 0.834 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.923 5.311 -17.157 17.984 hybrid contribution 1.318 -0.102 1.366 1.901 sum 2.241 5.209 -15.791 16.778 Atomic orbital electron populations 1.21653 0.94160 1.00465 1.01117 1.17688 0.94476 0.92447 0.89973 1.22280 0.99184 0.96888 1.01985 1.21081 0.91850 1.34687 1.06756 0.94581 1.25660 0.99851 0.94982 0.95958 1.70049 1.14825 1.41441 1.31918 0.86618 0.77669 0.77803 0.83474 1.21120 1.23938 1.13242 1.20611 0.96251 0.95282 0.95615 1.21930 0.93455 0.94793 0.99655 1.21591 1.01830 1.01257 0.92537 1.21100 0.93888 0.92928 0.98441 1.30684 1.14760 1.08491 1.21208 1.04746 0.77743 0.75286 0.72860 1.30054 1.18240 1.15798 1.14016 1.93518 1.87925 1.51736 1.63731 1.93524 1.46877 1.71030 1.85742 1.20969 0.95518 0.99397 0.90884 0.94538 0.91934 0.92755 0.92558 0.94925 0.90836 0.92690 0.86084 0.83938 0.82104 0.82887 0.82147 0.83417 0.83463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.47 8.29 71.98 0.60 -3.88 16 2 C 0.05 2.36 0.59 -53.67 -0.03 2.33 16 3 C -0.15 -5.64 7.38 71.98 0.53 -5.11 16 4 C -0.51 -27.02 7.47 25.60 0.19 -26.83 16 5 H 0.04 2.17 7.99 -2.91 -0.02 2.15 16 6 C 0.03 1.83 4.05 84.65 0.34 2.17 16 7 N -0.94 -56.50 13.96 21.44 0.30 -56.20 16 8 Si 0.92 42.22 22.12 68.60 1.52 43.74 16 9 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 10 H -0.31 -14.71 7.11 99.48 0.71 -14.01 16 11 H -0.21 -8.51 4.48 99.48 0.45 -8.07 16 12 C -0.08 -3.09 2.54 -19.86 -0.05 -3.14 16 13 C -0.08 -3.36 6.77 22.27 0.15 -3.21 16 14 C -0.15 -5.22 10.05 22.27 0.22 -5.00 16 15 C -0.05 -1.32 9.47 22.27 0.21 -1.11 16 16 C -0.67 -19.50 5.66 22.27 0.13 -19.37 16 17 S 2.51 56.19 5.80 -56.49 -0.33 55.86 16 18 C -0.63 -6.96 10.80 113.37 1.22 -5.73 16 19 O -0.97 -26.61 17.13 -127.65 -2.19 -28.80 16 20 O -0.97 -28.11 17.13 -127.65 -2.19 -30.30 16 21 C -0.05 -1.66 8.08 22.27 0.18 -1.49 16 22 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.06 2.04 7.86 -2.38 -0.02 2.02 16 24 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 26 H 0.03 1.29 2.78 -2.38 -0.01 1.29 16 27 H 0.07 2.27 7.26 -2.39 -0.02 2.25 16 28 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.12 5.91 5.53 -2.91 -0.02 5.89 16 30 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 31 H 0.16 3.64 7.57 -2.91 -0.02 3.61 16 32 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.16 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.15 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.15 4.41 6.72 -2.91 -0.02 4.39 16 Total: -1.00 -73.08 286.88 1.64 -71.44 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.83 Total: 14.62 kcal Atomic # 6 Polarization: -74.05 SS G_CDS: 3.69 Total: -70.36 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.30 Total: -56.20 kcal Atomic # 8 Polarization: -54.73 SS G_CDS: -4.37 Total: -59.10 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.52 Total: 43.74 kcal Atomic # 16 Polarization: 56.19 SS G_CDS: -0.33 Total: 55.86 kcal Total: -73.08 1.64 -71.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260631117.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.595 kcal (2) G-P(sol) polarization free energy of solvation -73.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds