Wall clock time and date at job start Mon Mar 30 2020 07:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99949 * 2 1 4 4 H 1.48498 * 109.47228 * 240.00097 * 3 2 1 5 5 H 1.48505 * 109.47496 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47191 * 120.00279 * 3 2 1 7 7 C 1.37875 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00557 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99943 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47313 * 300.00465 * 9 7 2 11 11 C 1.50701 * 109.47109 * 179.97438 * 9 7 2 12 12 C 1.38258 * 119.99365 * 294.31168 * 11 9 7 13 13 C 1.38220 * 120.02739 * 180.25147 * 12 11 9 14 14 C 1.38239 * 120.00922 * 359.49838 * 13 12 11 15 15 C 1.38334 * 119.98769 * 0.25210 * 14 13 12 16 16 Cl 1.73602 * 120.01263 * 180.02562 * 15 14 13 17 17 C 1.38185 * 119.98892 * 114.06309 * 11 9 7 18 18 C 1.50696 * 120.01045 * 0.02562 * 17 11 9 19 19 F 1.39904 * 109.47508 * 84.91308 * 18 17 11 20 20 C 1.53004 * 109.46830 * 59.99990 * 9 7 2 21 21 C 1.53001 * 117.49731 * 248.74749 * 20 9 7 22 22 C 1.53006 * 117.49723 * 180.08669 * 20 9 7 23 23 H 0.97005 * 119.99983 * 359.97438 * 1 2 3 24 24 H 1.08006 * 119.98804 * 0.02562 * 12 11 9 25 25 H 1.07993 * 120.00034 * 179.76950 * 13 12 11 26 26 H 1.08000 * 120.00858 * 180.22512 * 14 13 12 27 27 H 1.09000 * 109.47427 * 204.91252 * 18 17 11 28 28 H 1.09005 * 109.47062 * 324.90850 * 18 17 11 29 29 H 1.09000 * 115.55349 * 34.42056 * 20 9 7 30 30 H 1.09001 * 117.50271 * 359.97438 * 21 20 9 31 31 H 1.09003 * 117.49971 * 145.02320 * 21 20 9 32 32 H 1.08997 * 117.49896 * 214.97988 * 22 20 9 33 33 H 1.08999 * 117.49708 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 6 2.2304 -3.6446 -0.0018 12 6 3.0534 -3.8491 -1.0938 13 6 3.9482 -4.9025 -1.0978 14 6 4.0280 -5.7461 -0.0056 15 6 3.2084 -5.5389 1.0894 16 17 3.3085 -6.5975 2.4616 17 6 2.3091 -4.4872 1.0906 18 6 1.4155 -4.2611 2.2828 19 9 0.1794 -4.8783 2.0629 20 6 0.3709 -2.5799 -1.2495 21 6 -1.1447 -2.5123 -1.0513 22 6 -0.4807 -3.8376 -1.4335 23 1 -0.4850 0.8401 0.0004 24 1 2.9945 -3.1876 -1.9455 25 1 4.5882 -5.0640 -1.9526 26 1 4.7297 -6.5671 -0.0073 27 1 1.8811 -4.6868 3.1717 28 1 1.2668 -3.1911 2.4277 29 1 0.7825 -2.1153 -2.1455 30 1 -1.5148 -2.4107 -0.0311 31 1 -1.7302 -2.0035 -1.8171 32 1 -0.6297 -4.2001 -2.4506 33 1 -0.4137 -4.6076 -0.6650 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260637729.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:12 Heat of formation + Delta-G solvation = -19.568352 kcal Electronic energy + Delta-G solvation = -18545.840240 eV Core-core repulsion = 15511.985116 eV Total energy + Delta-G solvation = -3033.855124 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.06980 -39.19837 -36.66691 -35.92003 -32.87482 -31.97214 -30.83983 -27.47466 -25.82472 -23.63664 -21.87852 -21.23985 -20.64118 -19.00783 -16.68029 -16.43534 -15.80227 -15.40684 -15.16696 -14.58848 -14.13075 -14.12610 -13.85920 -13.05866 -12.93013 -12.82036 -12.22463 -11.76048 -11.38773 -11.24526 -11.13114 -10.97660 -10.79289 -10.52515 -10.44437 -10.18033 -9.98044 -9.88435 -9.73188 -8.84423 -8.81744 -8.36661 -8.35849 -7.99587 -6.07583 -4.16723 1.57626 1.79332 2.39645 3.26315 3.31938 3.34422 4.10197 4.37960 4.93358 5.03885 5.17244 5.21498 5.30844 5.54458 5.61787 5.78939 5.93000 5.97999 6.09514 6.17090 6.26146 6.33592 6.51425 6.56747 6.63804 6.82804 6.91627 6.99204 7.14280 7.24076 7.35298 7.47509 7.68320 7.87284 8.21828 8.85260 9.48241 10.97548 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.019752 B = 0.007135 C = 0.006680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.206424 B = 3923.395814 C = 4190.409173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.099 3.901 10 H 0.045 0.955 11 C 0.010 3.990 12 C -0.106 4.106 13 C -0.105 4.105 14 C -0.142 4.142 15 C -0.016 4.016 16 Cl -0.086 7.086 17 C -0.138 4.138 18 C 0.102 3.898 19 F -0.210 7.210 20 C -0.084 4.084 21 C -0.134 4.134 22 C -0.226 4.226 23 H 0.261 0.739 24 H 0.130 0.870 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.451 -8.626 0.455 9.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.133 4.133 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.081 3.919 10 H 0.063 0.937 11 C 0.010 3.990 12 C -0.124 4.124 13 C -0.123 4.123 14 C -0.160 4.160 15 C -0.042 4.042 16 Cl -0.058 7.058 17 C -0.140 4.140 18 C 0.048 3.952 19 F -0.191 7.191 20 C -0.102 4.102 21 C -0.171 4.171 22 C -0.263 4.263 23 H 0.071 0.929 24 H 0.148 0.852 25 H 0.142 0.858 26 H 0.142 0.858 27 H 0.094 0.906 28 H 0.117 0.883 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.251 -8.606 0.585 9.617 hybrid contribution 0.469 0.827 -0.007 0.951 sum 4.720 -7.779 0.577 9.117 Atomic orbital electron populations 1.70018 1.05640 1.26619 1.48294 1.24938 0.94856 0.98833 0.94692 0.86696 0.79648 0.83211 0.78677 1.20277 1.21296 1.20274 1.20894 0.92700 0.89219 1.53138 0.92377 1.17688 0.90706 0.89454 0.94063 0.93703 1.20444 0.94578 0.93703 0.90317 1.21183 0.95029 0.97031 0.99148 1.21101 0.98720 0.95041 0.97433 1.20763 1.00662 1.01505 0.93097 1.20740 1.00047 0.93695 0.89719 1.98320 1.97742 1.65465 1.44235 1.19944 0.99349 0.96412 0.98249 1.20825 0.79363 0.99721 0.95315 1.92773 1.44919 1.85188 1.96259 1.22135 0.92470 0.95966 0.99666 1.22431 0.96659 0.96824 1.01150 1.23101 1.10171 0.92650 1.00370 0.92879 0.85174 0.85836 0.85824 0.90601 0.88313 0.89878 0.89550 0.91156 0.91108 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.97 11.43 55.43 0.63 -22.34 16 2 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 3 Si 0.89 20.18 29.54 -169.99 -5.02 15.16 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -13.15 8.30 -34.44 -0.29 -13.43 16 8 H 0.06 1.47 7.73 -52.49 -0.41 1.06 16 9 C 0.10 2.28 1.83 -92.92 -0.17 2.11 16 10 H 0.05 1.12 5.47 -51.93 -0.28 0.84 16 11 C 0.01 0.20 4.38 -104.63 -0.46 -0.26 16 12 C -0.11 -1.92 8.97 -39.58 -0.36 -2.28 16 13 C -0.10 -1.60 10.05 -39.59 -0.40 -2.00 16 14 C -0.14 -2.15 9.83 -39.55 -0.39 -2.54 16 15 C -0.02 -0.26 6.32 -39.49 -0.25 -0.51 16 16 Cl -0.09 -1.28 27.21 -51.86 -1.41 -2.69 16 17 C -0.14 -2.61 5.60 -104.59 -0.59 -3.20 16 18 C 0.10 1.87 6.51 36.00 0.23 2.10 16 19 F -0.21 -4.15 17.34 2.25 0.04 -4.11 16 20 C -0.08 -1.86 3.63 -90.61 -0.33 -2.19 16 21 C -0.13 -2.90 9.04 -26.69 -0.24 -3.14 16 22 C -0.23 -4.52 9.87 -26.69 -0.26 -4.78 16 23 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 24 H 0.13 2.34 7.91 -52.48 -0.42 1.92 16 25 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 26 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 27 H 0.08 1.21 6.70 -51.93 -0.35 0.86 16 28 H 0.10 1.89 6.51 -51.93 -0.34 1.56 16 29 H 0.08 1.92 8.11 -51.93 -0.42 1.50 16 30 H 0.09 2.00 8.05 -51.93 -0.42 1.58 16 31 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 295.79 15.07 4.46 4.46 Total: -1.00 -25.98 295.79 -8.76 -34.74 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -3.88 Total: 3.17 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: -3.58 Total: -28.39 kcal Atomic # 7 Polarization: -22.97 SS G_CDS: 0.63 Total: -22.34 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.04 Total: -4.11 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -1.41 Total: -2.69 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -25.98 -8.76 -34.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260637729.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.173 kcal (2) G-P(sol) polarization free energy of solvation -25.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds