Wall clock time and date at job start Mon Mar 30 2020 07:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38452 * 120.01857 * 2 1 4 4 F 1.35100 * 120.02281 * 359.97438 * 3 2 1 5 5 C 1.38457 * 119.95921 * 179.70184 * 3 2 1 6 6 C 1.38219 * 119.99969 * 0.57375 * 5 3 2 7 7 C 1.50699 * 119.98136 * 179.70583 * 6 5 3 8 8 H 1.08998 * 109.47021 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.46857 * 300.02105 * 7 6 5 10 10 H 1.08002 * 119.99913 * 359.97438 * 9 7 6 11 11 C 1.37878 * 120.00171 * 179.97438 * 9 7 6 12 12 N 1.31515 * 119.99602 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00118 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.46844 * 90.00442 * 13 11 9 15 15 H 1.48505 * 109.46859 * 210.00032 * 13 11 9 16 16 H 1.48494 * 109.47194 * 330.00146 * 13 11 9 17 17 C 1.52998 * 109.47562 * 60.01809 * 7 6 5 18 18 C 1.52999 * 117.49909 * 128.62274 * 17 7 6 19 19 C 1.53001 * 117.49449 * 60.00037 * 17 7 6 20 20 C 1.38203 * 120.03961 * 359.72459 * 6 5 3 21 21 C 1.38298 * 120.01642 * 180.27430 * 2 1 3 22 22 Cl 1.73597 * 120.00314 * 359.97438 * 21 2 1 23 23 H 1.09002 * 109.47152 * 269.72447 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.72548 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.72528 * 1 2 3 26 26 H 1.08005 * 119.99469 * 180.30156 * 5 3 2 27 27 H 0.97005 * 120.00016 * 179.97438 * 12 11 9 28 28 H 1.08996 * 115.55292 * 274.33962 * 17 7 6 29 29 H 1.08988 * 117.50003 * 0.02562 * 18 17 7 30 30 H 1.09007 * 117.49782 * 145.02913 * 18 17 7 31 31 H 1.09004 * 117.49766 * 214.97778 * 19 17 7 32 32 H 1.08999 * 117.50114 * 359.97438 * 19 17 7 33 33 H 1.07996 * 119.98420 * 180.02562 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1988 0.0000 4 9 1.5250 2.3693 -0.0005 5 6 3.5842 1.1974 0.0062 6 6 4.2741 -0.0003 0.0005 7 6 5.7811 -0.0013 0.0006 8 1 6.1437 -1.0292 -0.0048 9 6 6.2840 0.7152 -1.2262 10 1 5.5824 1.1294 -1.9352 11 6 7.6396 0.8419 -1.4434 12 7 8.4938 0.3370 -0.5803 13 14 8.2629 1.7293 -2.9644 14 1 8.4282 3.1737 -2.6617 15 1 9.5710 1.1559 -3.3708 16 1 7.2850 1.5639 -4.0696 17 6 6.2916 0.7131 1.2535 18 6 7.3252 -0.0185 2.1122 19 6 5.8869 0.1345 2.6109 20 6 3.5827 -1.1970 -0.0058 21 6 2.1989 -1.1975 -0.0057 22 17 1.3314 -2.7012 -0.0123 23 1 -0.3633 -0.0049 1.0277 24 1 -0.3633 -0.8875 -0.5181 25 1 -0.3633 0.8925 -0.5096 26 1 4.1251 2.1322 0.0112 27 1 9.4476 0.4257 -0.7333 28 1 6.3790 1.7966 1.1742 29 1 7.6418 -1.0085 1.7843 30 1 8.0931 0.5838 2.5979 31 1 5.7085 0.8375 3.4246 32 1 5.2566 -0.7548 2.6112 33 1 4.1227 -2.1322 -0.0098 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260642745.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:35 Heat of formation + Delta-G solvation = -29.763964 kcal Electronic energy + Delta-G solvation = -18093.753211 eV Core-core repulsion = 15059.455972 eV Total energy + Delta-G solvation = -3034.297239 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.92087 -40.54387 -38.31778 -37.27742 -34.80358 -33.91434 -31.36090 -30.50073 -27.23164 -24.92925 -23.90678 -22.92059 -22.36290 -20.88997 -18.59114 -18.12107 -17.50704 -16.73153 -16.70889 -16.46678 -15.85878 -15.60996 -14.84847 -14.61912 -14.53240 -14.40094 -13.80733 -13.40939 -13.33975 -12.90525 -12.85646 -12.57614 -12.40350 -12.33013 -12.12307 -11.99666 -11.88362 -11.61242 -11.51544 -10.66217 -10.56265 -10.23514 -9.63102 -9.40779 -8.05576 -6.18509 0.09751 0.19964 1.03677 1.42155 1.45504 1.53165 2.42187 2.58043 3.20390 3.28875 3.36077 3.75796 3.84007 4.04224 4.23943 4.38458 4.46003 4.50998 4.65449 4.72103 4.73280 4.88775 4.93071 5.01808 5.16878 5.18256 5.28763 5.32659 5.43963 5.51471 5.64882 5.78232 5.85175 5.99383 6.31992 6.87572 7.48152 8.98324 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.019029 B = 0.006248 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.083919 B = 4480.397592 C = 4744.297006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.132 4.132 3 C 0.098 3.902 4 F -0.137 7.137 5 C -0.139 4.139 6 C -0.009 4.009 7 C 0.112 3.888 8 H 0.016 0.984 9 C -0.532 4.532 10 H 0.050 0.950 11 C 0.029 3.971 12 N -0.891 5.891 13 Si 0.943 3.057 14 H -0.278 1.278 15 H -0.285 1.285 16 H -0.274 1.274 17 C -0.101 4.101 18 C -0.139 4.139 19 C -0.193 4.193 20 C -0.130 4.130 21 C -0.009 4.009 22 Cl -0.050 7.050 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.130 0.870 27 H 0.259 0.741 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.349 -2.171 3.320 12.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.134 4.134 3 C 0.079 3.921 4 F -0.116 7.116 5 C -0.158 4.158 6 C -0.009 4.009 7 C 0.093 3.907 8 H 0.035 0.965 9 C -0.570 4.570 10 H 0.068 0.932 11 C -0.173 4.173 12 N -0.528 5.528 13 Si 0.769 3.231 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.199 1.199 17 C -0.120 4.120 18 C -0.177 4.177 19 C -0.230 4.230 20 C -0.148 4.148 21 C -0.036 4.036 22 Cl -0.021 7.021 23 H 0.106 0.894 24 H 0.103 0.897 25 H 0.094 0.906 26 H 0.147 0.853 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.265 -2.293 3.353 12.920 hybrid contribution 0.852 0.640 -0.887 1.387 sum -11.412 -1.652 2.466 11.792 Atomic orbital electron populations 1.20788 0.87597 1.04194 1.03959 1.19753 0.98615 0.89790 1.05258 1.17321 0.89444 0.80890 1.04451 1.91449 1.80231 1.45810 1.94092 1.21072 0.91788 1.00108 1.02881 1.20067 0.97333 0.91276 0.92252 1.17341 0.85103 0.95512 0.92710 0.96543 1.21225 0.91723 1.37218 1.06841 0.93195 1.25539 0.97207 0.96058 0.98469 1.70114 1.01965 1.44800 1.35968 0.85799 0.77621 0.78899 0.80756 1.20438 1.21049 1.19897 1.21983 1.02618 0.97113 0.90302 1.22361 0.91075 1.01092 1.03138 1.23077 0.98425 1.03183 0.98320 1.21116 0.92026 0.99016 1.02681 1.20423 0.91571 0.86901 1.04725 1.98333 1.76351 1.30583 1.96804 0.89405 0.89726 0.90591 0.85253 0.93136 0.91450 0.91037 0.90731 0.88776 0.89629 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.43 9.44 71.24 0.67 -1.76 16 2 C -0.13 -3.93 5.89 -19.80 -0.12 -4.05 16 3 C 0.10 3.28 7.24 22.37 0.16 3.45 16 4 F -0.14 -4.38 16.47 44.97 0.74 -3.64 16 5 C -0.14 -5.29 8.80 22.32 0.20 -5.09 16 6 C -0.01 -0.35 4.38 -19.88 -0.09 -0.44 16 7 C 0.11 5.20 2.10 -12.29 -0.03 5.17 16 8 H 0.02 0.84 7.63 -2.39 -0.02 0.82 16 9 C -0.53 -27.59 8.22 25.60 0.21 -27.38 16 10 H 0.05 2.62 7.60 -2.91 -0.02 2.59 16 11 C 0.03 1.51 5.30 84.65 0.45 1.96 16 12 N -0.89 -47.87 11.44 21.45 0.25 -47.62 16 13 Si 0.94 42.19 29.54 68.60 2.03 44.22 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 15 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 17 C -0.10 -4.46 3.87 -10.79 -0.04 -4.50 16 18 C -0.14 -5.83 9.05 30.60 0.28 -5.56 16 19 C -0.19 -7.08 9.87 30.60 0.30 -6.78 16 20 C -0.13 -4.56 9.45 22.30 0.21 -4.35 16 21 C -0.01 -0.29 6.31 22.32 0.14 -0.15 16 22 Cl -0.05 -1.26 27.30 -2.72 -0.07 -1.33 16 23 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.08 1.70 6.90 -2.39 -0.02 1.68 16 25 H 0.08 1.60 7.63 -2.38 -0.02 1.58 16 26 H 0.13 5.09 8.05 -2.91 -0.02 5.07 16 27 H 0.26 13.46 8.31 -92.70 -0.77 12.69 16 28 H 0.07 3.17 8.11 -2.39 -0.02 3.15 16 29 H 0.07 3.19 8.05 -2.39 -0.02 3.17 16 30 H 0.07 3.02 8.14 -2.38 -0.02 3.00 16 31 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 32 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.14 4.60 7.94 -2.91 -0.02 4.57 16 Total: -1.00 -53.14 298.79 6.40 -46.74 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 1.11 Total: 11.12 kcal Atomic # 6 Polarization: -51.83 SS G_CDS: 2.35 Total: -49.48 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.25 Total: -47.62 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.74 Total: -3.64 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.07 Total: -1.33 kcal Total: -53.14 6.40 -46.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260642745.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.972 kcal (2) G-P(sol) polarization free energy of solvation -53.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds