Wall clock time and date at job start Mon Mar 30 2020 07:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38258 * 119.99972 * 2 1 4 4 C 1.38211 * 119.99774 * 180.23526 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.52161 * 4 3 2 6 6 S 1.76200 * 120.00171 * 180.26074 * 5 4 3 7 7 C 1.81397 * 104.45265 * 90.00123 * 6 5 4 8 8 O 1.42101 * 104.27947 * 206.07510 * 6 5 4 9 9 O 1.42102 * 104.27462 * 333.92871 * 6 5 4 10 10 C 1.38215 * 120.00141 * 0.28711 * 5 4 3 11 11 C 1.38211 * 119.99804 * 179.82375 * 2 1 3 12 12 C 1.50706 * 120.00280 * 0.02562 * 11 2 1 13 13 C 1.53003 * 109.46606 * 85.02041 * 12 11 2 14 14 C 1.50706 * 109.46606 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00297 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99640 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00521 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99949 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46833 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47472 * 119.99974 * 18 16 14 21 21 H 1.48508 * 109.47130 * 240.00053 * 18 16 14 22 22 H 1.09004 * 109.47201 * 270.17114 * 1 2 3 23 23 H 1.08996 * 109.46896 * 30.17288 * 1 2 3 24 24 H 1.08999 * 109.46646 * 150.17148 * 1 2 3 25 25 H 1.07998 * 119.99848 * 0.03483 * 3 2 1 26 26 H 1.08002 * 120.00200 * 179.80765 * 4 3 2 27 27 H 1.08999 * 109.46767 * 59.99767 * 7 6 5 28 28 H 1.08990 * 109.47537 * 180.02562 * 7 6 5 29 29 H 1.09000 * 109.47226 * 300.00547 * 7 6 5 30 30 H 1.07996 * 120.00479 * 179.97438 * 10 5 4 31 31 H 1.08994 * 109.47063 * 205.01826 * 12 11 2 32 32 H 1.09001 * 109.46968 * 325.02719 * 12 11 2 33 33 H 1.08994 * 109.47234 * 299.99681 * 13 12 11 34 34 H 1.08993 * 109.47092 * 60.00354 * 13 12 11 35 35 H 0.96998 * 120.00544 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0049 5 6 4.2717 0.0000 0.0002 6 16 6.0337 -0.0001 0.0008 7 6 6.4858 0.0069 1.7576 8 8 6.3844 -1.2394 -0.5993 9 8 6.3844 1.2345 -0.6092 10 6 3.5807 -1.1970 0.0042 11 6 2.1981 -1.1970 0.0037 12 6 1.4446 -2.5021 0.0071 13 6 1.0817 -2.8852 -1.4291 14 6 0.3277 -4.1900 -1.4256 15 1 0.1269 -4.6953 -0.4924 16 6 -0.1068 -4.7382 -2.6137 17 7 0.1363 -4.1223 -3.7500 18 14 -1.0421 -6.3552 -2.6094 19 1 -1.1846 -6.8409 -1.2133 20 1 -2.3880 -6.1503 -3.2025 21 1 -0.2966 -7.3604 -3.4090 22 1 -0.3634 0.0031 1.0277 23 1 -0.3633 0.8884 -0.5165 24 1 -0.3632 -0.8915 -0.5112 25 1 1.6583 2.1326 0.0006 26 1 4.1205 2.1326 -0.0081 27 1 6.0786 -0.8811 2.2410 28 1 7.5715 0.0078 1.8534 29 1 6.0787 0.8988 2.2340 30 1 4.1206 -2.1323 0.0077 31 1 2.0692 -3.2811 0.4442 32 1 0.5334 -2.3940 0.5955 33 1 0.4571 -2.1062 -1.8661 34 1 1.9928 -2.9932 -2.0175 35 1 -0.1691 -4.5082 -4.5859 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260645113.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:39 Heat of formation + Delta-G solvation = -64.082095 kcal Electronic energy + Delta-G solvation = -18040.672200 eV Core-core repulsion = 15130.390826 eV Total energy + Delta-G solvation = -2910.281373 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.42536 -37.06087 -35.90272 -34.38101 -32.73704 -31.95284 -29.67410 -29.15870 -27.12012 -25.09027 -22.31573 -21.69785 -20.48143 -18.65131 -17.32539 -16.31522 -16.21335 -16.11106 -15.16705 -15.10961 -14.51695 -14.06072 -13.61726 -13.42355 -13.35970 -13.01885 -12.85002 -12.32477 -12.09346 -12.04065 -11.94447 -11.85312 -11.75348 -11.36730 -11.10392 -10.97590 -10.84544 -10.61154 -10.38689 -9.87957 -9.72076 -9.11921 -8.84822 -8.38281 -8.29950 -6.02456 -4.06239 0.06401 1.05436 1.57276 2.90268 3.29518 3.37279 3.40529 3.59580 4.01370 4.10086 4.43655 4.60793 4.76056 4.97968 5.08798 5.13215 5.33259 5.44086 5.50545 5.52285 5.77382 5.82471 5.91149 6.13769 6.21274 6.25532 6.44199 6.52352 6.55500 6.90051 6.91431 7.16767 7.64312 7.74680 7.96539 8.35682 9.00836 9.58338 11.08511 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.024951 B = 0.004726 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.914001 B = 5923.048914 C = 6539.480553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.027 4.027 3 C -0.143 4.143 4 C -0.040 4.040 5 C -0.665 4.665 6 S 2.502 3.498 7 C -0.652 4.652 8 O -0.936 6.936 9 O -0.944 6.944 10 C -0.023 4.023 11 C -0.079 4.079 12 C -0.082 4.082 13 C 0.027 3.973 14 C -0.523 4.523 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.092 0.908 25 H 0.126 0.874 26 H 0.134 0.866 27 H 0.132 0.868 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.139 0.861 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.020 0.980 34 H 0.019 0.981 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.114 11.144 12.552 18.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.028 4.028 3 C -0.162 4.162 4 C -0.059 4.059 5 C -0.753 4.753 6 S 2.682 3.318 7 C -0.801 4.801 8 O -0.933 6.933 9 O -0.942 6.942 10 C -0.042 4.042 11 C -0.080 4.080 12 C -0.119 4.119 13 C -0.010 4.010 14 C -0.562 4.562 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.091 0.909 23 H 0.084 0.916 24 H 0.111 0.889 25 H 0.144 0.856 26 H 0.152 0.848 27 H 0.150 0.850 28 H 0.146 0.854 29 H 0.148 0.852 30 H 0.157 0.843 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.629 11.125 11.653 18.276 hybrid contribution -1.148 -0.829 0.443 1.483 sum 7.481 10.297 12.097 17.559 Atomic orbital electron populations 1.21061 0.90720 1.04466 1.02475 1.20178 0.96658 0.92614 0.93316 1.21093 0.94080 0.97716 1.03304 1.20719 0.94666 0.96094 0.94444 1.30247 1.24863 0.99596 1.20558 1.05007 0.74740 0.74601 0.77442 1.30241 1.11941 1.11996 1.25936 1.93602 1.82419 1.44189 1.73135 1.93558 1.82623 1.44973 1.73001 1.20863 0.94393 0.96329 0.92603 1.20401 0.93578 0.96438 0.97614 1.20898 0.98173 0.90707 1.02164 1.19120 0.96904 0.96347 0.88617 1.21249 1.35633 1.06451 0.92821 0.92497 1.25023 0.96190 0.97510 0.95629 1.69977 1.46471 1.39021 0.97681 0.86540 0.79597 0.83787 0.78084 1.19721 1.21023 1.20967 0.90938 0.91571 0.88905 0.85611 0.84811 0.84979 0.85385 0.85207 0.84299 0.91919 0.91675 0.96188 0.96259 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 9.22 36.01 0.33 -1.55 16 2 C -0.03 -0.44 5.88 -104.62 -0.62 -1.05 16 3 C -0.14 -1.98 9.70 -39.58 -0.38 -2.36 16 4 C -0.04 -0.54 9.47 -39.58 -0.37 -0.91 16 5 C -0.66 -9.41 5.66 -39.58 -0.22 -9.64 16 6 S 2.50 29.57 5.80 -107.50 -0.62 28.94 16 7 C -0.65 -4.38 10.80 101.05 1.09 -3.29 16 8 O -0.94 -14.75 17.13 -57.54 -0.99 -15.73 16 9 O -0.94 -13.54 17.13 -57.54 -0.99 -14.53 16 10 C -0.02 -0.38 9.11 -39.58 -0.36 -0.74 16 11 C -0.08 -1.41 5.13 -104.62 -0.54 -1.95 16 12 C -0.08 -1.63 4.59 -27.88 -0.13 -1.76 16 13 C 0.03 0.69 4.76 -27.88 -0.13 0.55 16 14 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 18 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 23 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 24 H 0.09 1.59 5.43 -51.93 -0.28 1.30 16 25 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 26 H 0.13 1.45 7.57 -52.49 -0.40 1.06 16 27 H 0.13 0.76 8.14 -51.92 -0.42 0.33 16 28 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.13 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.14 2.18 7.57 -52.49 -0.40 1.78 16 31 H 0.06 1.20 8.05 -51.93 -0.42 0.78 16 32 H 0.06 1.22 6.99 -51.93 -0.36 0.85 16 33 H 0.02 0.53 6.91 -51.93 -0.36 0.17 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 308.51 15.07 4.65 4.65 Total: -1.00 -35.49 308.51 -8.69 -44.18 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -4.71 Total: -1.89 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: -1.74 Total: -35.95 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.74 Total: -26.09 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -1.97 Total: -30.26 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 29.57 SS G_CDS: -0.62 Total: 28.94 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -35.49 -8.69 -44.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260645113.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.902 kcal (2) G-P(sol) polarization free energy of solvation -35.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds