Wall clock time and date at job start Mon Mar 30 2020 07:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76202 * 102.99852 * 2 1 4 4 C 1.39066 * 120.03823 * 0.02562 * 3 2 1 5 5 C 1.38135 * 120.07568 * 179.97438 * 4 3 2 6 6 C 1.38174 * 120.16207 * 359.76379 * 5 4 3 7 7 C 1.50693 * 119.96298 * 180.25482 * 6 5 4 8 8 C 1.52999 * 109.47082 * 265.25606 * 7 6 5 9 9 C 1.50705 * 109.46922 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00260 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99831 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99774 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00013 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47237 * 60.00650 * 13 11 9 15 15 H 1.48508 * 109.47165 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47120 * 300.00607 * 13 11 9 17 17 C 1.39027 * 120.07429 * 0.51043 * 6 5 4 18 18 S 1.76204 * 120.03739 * 179.74102 * 17 6 5 19 19 C 1.81404 * 102.99881 * 179.72800 * 18 17 6 20 20 C 1.38802 * 120.03767 * 179.97438 * 3 2 1 21 21 H 1.09007 * 109.46976 * 59.99915 * 1 2 3 22 22 H 1.08998 * 109.47442 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47299 * 300.00417 * 1 2 3 24 24 H 1.07995 * 119.96640 * 359.97438 * 4 3 2 25 25 H 1.07998 * 119.91994 * 180.02562 * 5 4 3 26 26 H 1.09000 * 109.47450 * 25.25876 * 7 6 5 27 27 H 1.09007 * 109.47103 * 145.25394 * 7 6 5 28 28 H 1.08999 * 109.46938 * 299.99686 * 8 7 6 29 29 H 1.09002 * 109.47029 * 60.00307 * 8 7 6 30 30 H 0.97000 * 119.99625 * 179.97438 * 12 11 9 31 31 H 1.09002 * 109.47124 * 179.97438 * 19 18 17 32 32 H 1.09001 * 109.46975 * 60.00064 * 19 18 17 33 33 H 1.09004 * 109.47147 * 300.00027 * 19 18 17 34 34 H 1.07996 * 120.08036 * 0.04547 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1939 2.6660 0.0005 5 6 1.5037 4.0121 0.0011 6 6 2.8236 4.4207 0.0060 7 6 3.1565 5.8904 0.0124 8 6 3.3892 6.3668 -1.4228 9 6 3.7215 7.8368 -1.4165 10 1 3.7630 8.3770 -0.4822 11 6 3.9735 8.4917 -2.6033 12 7 3.9235 7.8337 -3.7409 13 14 4.3861 10.3135 -2.5954 14 1 5.6151 10.5393 -1.7932 15 1 4.6118 10.7760 -3.9885 16 1 3.2587 11.0738 -1.9984 17 6 3.8450 3.4775 -0.0003 18 16 5.5279 3.9997 -0.0009 19 6 6.4414 2.4325 -0.0015 20 6 3.5374 2.1236 0.0005 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 0.1611 2.3503 0.0005 25 1 0.7123 4.7470 0.0019 26 1 2.3292 6.4485 0.4508 27 1 4.0589 6.0561 0.6011 28 1 4.2166 5.8088 -1.8612 29 1 2.4868 6.2013 -2.0114 30 1 4.1004 8.2945 -4.5759 31 1 7.5122 2.6361 -0.0024 32 1 6.1801 1.8600 -0.8915 33 1 6.1808 1.8597 0.8885 34 1 4.3288 1.3887 0.0002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260665813.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:12 Heat of formation + Delta-G solvation = -10.202678 kcal Electronic energy + Delta-G solvation = -15543.035269 eV Core-core repulsion = 13077.843153 eV Total energy + Delta-G solvation = -2465.192116 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.22771 -36.02261 -34.07274 -32.54345 -30.83017 -29.76833 -29.58088 -27.00455 -23.97504 -23.77631 -21.85662 -19.22723 -18.50567 -17.13134 -16.85831 -16.61295 -16.48570 -15.33195 -15.13094 -15.00740 -14.66305 -14.52101 -14.45540 -14.28465 -13.83032 -13.50200 -13.38652 -13.16882 -12.81289 -12.74478 -12.41650 -12.39340 -11.79224 -11.67932 -11.31525 -11.26460 -10.93954 -10.83724 -10.50951 -10.27418 -8.55993 -8.22256 -8.12678 -6.27035 0.11921 0.24210 0.50197 0.66312 1.40971 1.44420 1.46332 1.52050 1.59311 2.42719 2.56689 3.17110 3.77766 3.95254 4.06142 4.24253 4.26841 4.28594 4.30250 4.39158 4.51199 4.61768 4.80650 4.83198 4.85901 4.87182 5.05664 5.15440 5.22466 5.44706 5.53131 5.79076 5.81447 5.88752 6.26521 6.88503 7.41271 8.95635 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.024175 B = 0.004828 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.940695 B = 5797.797078 C = 6546.157640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.138 6.138 3 C -0.085 4.085 4 C -0.134 4.134 5 C -0.093 4.093 6 C -0.075 4.075 7 C -0.066 4.066 8 C 0.043 3.957 9 C -0.541 4.541 10 H 0.059 0.941 11 C 0.003 3.997 12 N -0.932 5.932 13 Si 0.963 3.037 14 H -0.268 1.268 15 H -0.283 1.283 16 H -0.266 1.266 17 C -0.077 4.077 18 S -0.142 6.142 19 C -0.143 4.143 20 C -0.120 4.120 21 H 0.090 0.910 22 H 0.130 0.870 23 H 0.095 0.905 24 H 0.153 0.847 25 H 0.140 0.860 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.000 1.000 29 H -0.015 1.015 30 H 0.263 0.737 31 H 0.125 0.875 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.030 -16.412 9.299 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.103 5.897 3 C -0.199 4.199 4 C -0.159 4.159 5 C -0.114 4.114 6 C -0.082 4.082 7 C -0.104 4.104 8 C 0.006 3.994 9 C -0.578 4.578 10 H 0.078 0.922 11 C -0.195 4.195 12 N -0.573 5.573 13 Si 0.787 3.213 14 H -0.193 1.193 15 H -0.208 1.208 16 H -0.190 1.190 17 C -0.192 4.192 18 S 0.101 5.899 19 C -0.311 4.311 20 C -0.150 4.150 21 H 0.109 0.891 22 H 0.148 0.852 23 H 0.114 0.886 24 H 0.171 0.829 25 H 0.158 0.842 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.019 0.981 29 H 0.003 0.997 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.742 -16.374 9.122 18.943 hybrid contribution -1.017 0.959 -0.447 1.468 sum -3.759 -15.415 8.675 18.083 Atomic orbital electron populations 1.23799 0.91435 1.08663 1.06608 1.85309 1.10169 1.01327 1.92892 1.21702 0.95855 0.97788 1.04525 1.21399 0.99330 0.92176 1.03039 1.21131 0.95232 0.96433 0.98628 1.19994 0.93134 0.95498 0.99611 1.20564 1.00900 0.89950 0.98940 1.18826 0.94818 0.94808 0.90966 1.21620 1.47410 0.95725 0.93090 0.92241 1.25929 0.95206 1.03220 0.95117 1.70112 1.50603 1.38227 0.98313 0.85543 0.79181 0.79391 0.77193 1.19271 1.20839 1.19046 1.21652 0.97023 0.95743 1.04754 1.86290 0.97066 1.14662 1.91883 1.23809 1.03995 0.97117 1.06180 1.20839 0.96066 0.93541 1.04524 0.89143 0.85205 0.88635 0.82914 0.84234 0.91423 0.92050 0.98142 0.99665 0.92871 0.85658 0.89488 0.88540 0.84160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.15 113.37 1.04 -0.78 16 2 S -0.14 -2.97 22.56 -56.49 -1.27 -4.25 16 3 C -0.08 -2.39 6.11 22.60 0.14 -2.25 16 4 C -0.13 -3.69 9.36 22.44 0.21 -3.48 16 5 C -0.09 -3.07 9.66 22.23 0.21 -2.86 16 6 C -0.07 -2.92 5.16 -19.69 -0.10 -3.02 16 7 C -0.07 -2.93 4.74 29.85 0.14 -2.78 16 8 C 0.04 2.38 4.95 29.85 0.15 2.53 16 9 C -0.54 -31.64 9.11 25.60 0.23 -31.41 16 10 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 11 C 0.00 0.18 5.46 84.65 0.46 0.64 16 12 N -0.93 -58.17 13.29 21.45 0.28 -57.89 16 13 Si 0.96 45.15 29.54 68.60 2.03 47.17 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 17 C -0.08 -2.82 6.11 22.60 0.14 -2.68 16 18 S -0.14 -5.05 20.45 -56.49 -1.15 -6.20 16 19 C -0.14 -3.30 9.15 113.37 1.04 -2.26 16 20 C -0.12 -3.73 9.10 22.55 0.21 -3.52 16 21 H 0.09 1.17 7.75 -2.39 -0.02 1.15 16 22 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.09 1.11 7.74 -2.39 -0.02 1.09 16 24 H 0.15 3.12 5.87 -2.91 -0.02 3.10 16 25 H 0.14 4.18 8.06 -2.91 -0.02 4.15 16 26 H 0.07 2.83 8.05 -2.39 -0.02 2.81 16 27 H 0.06 2.75 7.01 -2.38 -0.02 2.74 16 28 H 0.00 0.01 7.72 -2.39 -0.02 -0.01 16 29 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 30 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 31 H 0.13 2.37 8.14 -2.39 -0.02 2.36 16 32 H 0.09 1.92 7.75 -2.39 -0.02 1.90 16 33 H 0.10 1.88 7.75 -2.39 -0.02 1.86 16 34 H 0.14 3.75 5.88 -2.91 -0.02 3.73 16 Total: -1.00 -69.68 309.26 4.83 -64.85 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 1.08 Total: 8.18 kcal Atomic # 6 Polarization: -55.74 SS G_CDS: 3.86 Total: -51.87 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.28 Total: -57.89 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: -8.02 SS G_CDS: -2.43 Total: -10.45 kcal Total: -69.68 4.83 -64.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260665813.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.648 kcal (2) G-P(sol) polarization free energy of solvation -69.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds