Wall clock time and date at job start Mon Mar 30 2020 07:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38248 * 119.97249 * 2 1 4 4 C 1.38404 * 119.98838 * 179.72304 * 3 2 1 5 5 F 1.35094 * 120.03113 * 180.30047 * 4 3 2 6 6 C 1.38591 * 119.93343 * 0.55649 * 4 3 2 7 7 Cl 1.73607 * 120.02131 * 179.74251 * 6 4 3 8 8 C 1.38275 * 119.95340 * 359.46874 * 6 4 3 9 9 C 1.38213 * 119.98085 * 180.02562 * 2 1 3 10 10 C 1.50701 * 119.97206 * 359.97161 * 9 2 1 11 11 H 1.09010 * 109.46704 * 354.26594 * 10 9 2 12 12 C 1.50702 * 109.47220 * 114.26299 * 10 9 2 13 13 H 1.07993 * 119.99880 * 0.02562 * 12 10 9 14 14 C 1.37874 * 119.99996 * 180.02562 * 12 10 9 15 15 N 1.31521 * 120.00019 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 120.00094 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47184 * 59.99571 * 16 14 12 18 18 H 1.48502 * 109.47245 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46616 * 299.99726 * 16 14 12 20 20 C 1.52994 * 109.47577 * 234.26991 * 10 9 2 21 21 C 1.52995 * 117.50311 * 128.74571 * 20 10 9 22 22 C 1.52997 * 117.50031 * 60.08287 * 20 10 9 23 23 H 1.09003 * 109.46859 * 264.33740 * 1 2 3 24 24 H 1.08990 * 109.47619 * 24.33992 * 1 2 3 25 25 H 1.08997 * 109.46727 * 144.34672 * 1 2 3 26 26 H 1.08000 * 120.00066 * 0.02562 * 3 2 1 27 27 H 1.08005 * 119.99130 * 180.23350 * 8 6 4 28 28 H 0.96994 * 119.99944 * 180.02562 * 15 14 12 29 29 H 1.09003 * 115.54701 * 274.41669 * 20 10 9 30 30 H 1.08999 * 117.49842 * 359.97438 * 21 20 10 31 31 H 1.09001 * 117.50371 * 145.02131 * 21 20 10 32 32 H 1.09002 * 117.49914 * 214.98356 * 22 20 10 33 33 H 1.08994 * 117.50387 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1976 0.0000 4 6 3.5817 1.1980 0.0058 5 9 4.2574 2.3678 0.0119 6 6 4.2736 -0.0028 -0.0001 7 17 6.0097 -0.0050 0.0004 8 6 3.5802 -1.1992 -0.0006 9 6 2.1976 -1.1972 -0.0005 10 6 1.4430 -2.5017 -0.0005 11 1 0.3760 -2.3041 0.1027 12 6 1.6963 -3.2286 -1.2960 13 1 2.3397 -2.7901 -2.0444 14 6 1.1067 -4.4535 -1.5259 15 7 0.3228 -4.9873 -0.6147 16 14 1.4212 -5.3549 -3.1315 17 1 2.8748 -5.6246 -3.2713 18 1 0.6775 -6.6403 -3.1315 19 1 0.9617 -4.5166 -4.2679 20 6 1.9173 -3.3652 1.1701 21 6 0.8486 -3.9442 2.0993 22 6 1.7437 -2.7996 2.5810 23 1 -0.3633 -0.1014 1.0227 24 1 -0.3634 0.9362 -0.4235 25 1 -0.3633 -0.8350 -0.5990 26 1 1.6572 2.1327 0.0004 27 1 4.1188 -2.1353 -0.0014 28 1 -0.0917 -5.8492 -0.7763 29 1 2.8003 -3.9746 0.9772 30 1 -0.1923 -3.7095 1.8770 31 1 1.0286 -4.9343 2.5182 32 1 2.5122 -3.0372 3.3166 33 1 1.2912 -1.8126 2.6755 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260680254.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:24 Heat of formation + Delta-G solvation = -26.897734 kcal Electronic energy + Delta-G solvation = -18275.168593 eV Core-core repulsion = 15240.995643 eV Total energy + Delta-G solvation = -3034.172950 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.89490 -40.67089 -38.08716 -37.42344 -34.64620 -33.48743 -32.56291 -29.09004 -27.61167 -25.36407 -23.63268 -22.89302 -22.13532 -20.73664 -18.55328 -18.30994 -17.48416 -16.94427 -16.70907 -16.35632 -15.75069 -15.08390 -14.89599 -14.59687 -14.43925 -14.14590 -13.92064 -13.64850 -13.49907 -12.89654 -12.82615 -12.51479 -12.31821 -12.17009 -12.07368 -11.99715 -11.68650 -11.60456 -11.49996 -10.61923 -10.51548 -10.16672 -9.73935 -9.24145 -8.01902 -6.13698 0.09088 0.26370 1.04566 1.44144 1.46719 1.51959 2.44283 2.61721 3.15548 3.25084 3.40225 3.73413 4.02357 4.19260 4.25506 4.35137 4.52808 4.65497 4.68264 4.72294 4.87958 4.95272 4.99175 5.10389 5.16506 5.28186 5.32979 5.43719 5.51719 5.56228 5.68446 5.86117 5.91705 6.06667 6.38320 6.92321 7.52320 9.01129 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.018239 B = 0.006860 C = 0.006317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.841636 B = 4080.856414 C = 4431.363928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.066 4.066 3 C -0.134 4.134 4 C 0.078 3.922 5 F -0.136 7.136 6 C -0.083 4.083 7 Cl -0.063 7.063 8 C -0.078 4.078 9 C -0.043 4.043 10 C 0.109 3.891 11 H 0.037 0.963 12 C -0.529 4.529 13 H 0.045 0.955 14 C 0.032 3.968 15 N -0.889 5.889 16 Si 0.936 3.064 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.276 1.276 20 C -0.102 4.102 21 C -0.139 4.139 22 C -0.194 4.194 23 H 0.081 0.919 24 H 0.090 0.910 25 H 0.062 0.938 26 H 0.168 0.832 27 H 0.129 0.871 28 H 0.259 0.741 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.433 9.483 3.472 10.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.066 4.066 3 C -0.153 4.153 4 C 0.058 3.942 5 F -0.115 7.115 6 C -0.111 4.111 7 Cl -0.034 7.034 8 C -0.097 4.097 9 C -0.043 4.043 10 C 0.091 3.909 11 H 0.055 0.945 12 C -0.567 4.567 13 H 0.063 0.937 14 C -0.169 4.169 15 N -0.527 5.527 16 Si 0.763 3.237 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.121 4.121 21 C -0.176 4.176 22 C -0.231 4.231 23 H 0.100 0.900 24 H 0.109 0.891 25 H 0.081 0.919 26 H 0.186 0.814 27 H 0.147 0.853 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.497 9.364 3.511 10.307 hybrid contribution 0.626 -0.874 -0.975 1.451 sum 3.123 8.490 2.537 9.395 Atomic orbital electron populations 1.20849 0.89113 1.03623 1.03182 1.19994 0.97807 0.91197 0.97603 1.21131 0.90619 1.00108 1.03415 1.17355 0.90419 0.79685 1.06716 1.91472 1.80349 1.45430 1.94261 1.21001 0.85165 0.94197 1.10712 1.98334 1.08968 1.98928 1.97153 1.20757 0.94174 0.95872 0.98850 1.20329 0.92875 0.96533 0.94610 1.17438 0.94293 0.86718 0.92486 0.94517 1.21173 1.29687 1.04083 1.01786 0.93671 1.25457 0.95015 0.97914 0.98550 1.70088 1.30745 1.17622 1.34199 0.85968 0.78018 0.78086 0.81634 1.20436 1.21171 1.20177 1.22020 0.99059 1.01237 0.89789 1.22364 0.95980 0.95846 1.03397 1.23065 1.03570 0.97981 0.98456 0.90047 0.89143 0.91899 0.81423 0.85335 0.93216 0.91948 0.90750 0.91065 0.89190 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.13 9.14 71.23 0.65 -2.48 16 2 C -0.07 -2.14 5.88 -19.87 -0.12 -2.25 16 3 C -0.13 -3.84 9.66 22.31 0.22 -3.62 16 4 C 0.08 2.47 7.28 22.39 0.16 2.63 16 5 F -0.14 -4.15 16.84 44.97 0.76 -3.40 16 6 C -0.08 -2.83 6.33 22.36 0.14 -2.69 16 7 Cl -0.06 -1.94 28.62 -2.72 -0.08 -2.02 16 8 C -0.08 -2.91 8.75 22.28 0.20 -2.71 16 9 C -0.04 -1.65 4.38 -19.86 -0.09 -1.74 16 10 C 0.11 4.83 1.83 -12.29 -0.02 4.81 16 11 H 0.04 1.73 5.47 -2.38 -0.01 1.71 16 12 C -0.53 -26.80 8.30 25.60 0.21 -26.58 16 13 H 0.04 2.34 7.73 -2.91 -0.02 2.32 16 14 C 0.03 1.66 5.30 84.65 0.45 2.11 16 15 N -0.89 -46.66 11.43 21.45 0.25 -46.42 16 16 Si 0.94 41.73 29.54 68.60 2.03 43.75 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 18 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 20 C -0.10 -4.39 3.63 -10.80 -0.04 -4.43 16 21 C -0.14 -5.65 9.04 30.62 0.28 -5.37 16 22 C -0.19 -6.93 9.87 30.62 0.30 -6.63 16 23 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.09 1.95 8.05 -2.39 -0.02 1.94 16 25 H 0.06 2.11 6.54 -2.39 -0.02 2.09 16 26 H 0.17 3.61 8.06 -2.91 -0.02 3.58 16 27 H 0.13 5.02 7.91 -2.91 -0.02 5.00 16 28 H 0.26 13.22 8.31 -92.71 -0.77 12.45 16 29 H 0.06 2.91 8.11 -2.39 -0.02 2.89 16 30 H 0.07 3.19 8.05 -2.39 -0.02 3.17 16 31 H 0.07 2.84 8.14 -2.39 -0.02 2.83 16 32 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -52.67 297.92 6.41 -46.26 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 1.12 Total: 10.79 kcal Atomic # 6 Polarization: -51.31 SS G_CDS: 2.34 Total: -48.97 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.25 Total: -46.42 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.76 Total: -3.40 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -0.08 Total: -2.02 kcal Total: -52.67 6.41 -46.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260680254.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.360 kcal (2) G-P(sol) polarization free energy of solvation -52.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds