Wall clock time and date at job start Mon Mar 30 2020 07:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76199 * 102.99690 * 2 1 4 4 C 1.38711 * 120.10624 * 359.72310 * 3 2 1 5 5 C 1.38266 * 120.00122 * 179.71767 * 4 3 2 6 6 C 1.38280 * 120.20793 * 0.55998 * 5 4 3 7 7 C 1.50694 * 119.89729 * 179.69249 * 6 5 4 8 8 C 1.52998 * 109.47763 * 270.02337 * 7 6 5 9 9 C 1.50694 * 109.47383 * 179.97438 * 8 7 6 10 10 H 1.08003 * 120.00114 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99803 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00084 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99780 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47437 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47264 * 119.99966 * 13 11 9 16 16 H 1.48502 * 109.47178 * 239.99895 * 13 11 9 17 17 C 1.38268 * 120.20646 * 359.71963 * 6 5 4 18 18 C 1.38707 * 119.99813 * 0.02562 * 17 6 5 19 19 S 1.76203 * 120.10282 * 180.02562 * 18 17 6 20 20 C 1.81401 * 102.99852 * 359.97438 * 19 18 17 21 21 H 1.09008 * 109.46557 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47133 * 299.99798 * 1 2 3 23 23 H 1.08998 * 109.47280 * 60.00548 * 1 2 3 24 24 H 1.08003 * 119.99662 * 0.02562 * 4 3 2 25 25 H 1.07999 * 119.89584 * 180.25678 * 5 4 3 26 26 H 1.08999 * 109.47360 * 30.02680 * 7 6 5 27 27 H 1.09002 * 109.46859 * 150.02445 * 7 6 5 28 28 H 1.08999 * 109.46962 * 300.00587 * 8 7 6 29 29 H 1.09005 * 109.46592 * 59.99650 * 8 7 6 30 30 H 0.97005 * 119.99952 * 179.97438 * 12 11 9 31 31 H 1.08005 * 120.00186 * 180.02562 * 17 6 5 32 32 H 1.09000 * 109.47187 * 299.99992 * 20 19 18 33 33 H 1.08994 * 109.47309 * 59.99970 * 20 19 18 34 34 H 1.09005 * 109.46871 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1976 2.6647 -0.0058 5 6 1.5110 4.0113 0.0001 6 6 2.8326 4.4181 0.0001 7 6 3.1662 5.8877 -0.0004 8 6 3.2787 6.3847 -1.4430 9 6 3.6117 7.8544 -1.4435 10 1 3.7307 8.3815 -0.5083 11 6 3.7634 8.5265 -2.6378 12 7 3.6179 7.8849 -3.7765 13 14 4.1768 10.3482 -2.6383 14 1 4.2868 10.8313 -1.2384 15 1 5.4683 10.5625 -3.3393 16 1 3.1034 11.0992 -3.3377 17 6 3.8490 3.4807 0.0001 18 6 3.5443 2.1275 -0.0005 19 16 4.8374 0.9305 0.0001 20 6 6.3375 1.9504 0.0007 21 1 -0.3633 -1.0278 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 0.1642 2.3507 -0.0099 25 1 0.7211 4.7478 -0.0002 26 1 2.3789 6.4392 0.5135 27 1 4.1147 6.0451 0.5131 28 1 4.0660 5.8332 -1.9569 29 1 2.3302 6.2272 -1.9566 30 1 3.7243 8.3578 -4.6167 31 1 4.8801 3.8021 0.0005 32 1 6.3495 2.5796 -0.8893 33 1 6.3487 2.5797 0.8906 34 1 7.2158 1.3048 0.0006 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260690043.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:14 Heat of formation + Delta-G solvation = -12.778570 kcal Electronic energy + Delta-G solvation = -15422.166890 eV Core-core repulsion = 12956.863075 eV Total energy + Delta-G solvation = -2465.303815 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.24389 -36.01916 -34.06953 -32.54399 -30.86554 -30.05482 -29.38548 -27.00493 -23.98670 -23.81952 -21.93123 -19.00047 -18.51769 -17.57192 -16.87851 -16.53394 -16.21296 -15.39252 -15.16075 -15.05371 -14.73181 -14.52992 -14.47705 -14.31343 -13.85589 -13.53788 -13.43669 -13.11217 -12.88503 -12.76044 -12.44813 -12.24207 -11.84334 -11.70974 -11.62440 -11.24483 -10.84234 -10.69948 -10.57500 -10.39920 -8.70334 -8.22695 -8.12699 -6.33141 0.11971 0.23422 0.34390 0.77364 1.19060 1.40159 1.40536 1.53868 1.74991 2.39743 2.57793 3.12392 3.74857 3.95420 4.21037 4.21855 4.23767 4.28266 4.30770 4.35100 4.41333 4.63612 4.81036 4.82922 4.85780 4.89154 5.01309 5.11607 5.19648 5.48010 5.48646 5.79198 5.80991 5.84267 6.20863 6.84019 7.36785 8.90835 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.024692 B = 0.004427 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.711760 B = 6323.407196 C = 7051.127031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.131 6.131 3 C -0.095 4.095 4 C -0.112 4.112 5 C -0.114 4.114 6 C -0.064 4.064 7 C -0.064 4.064 8 C 0.038 3.962 9 C -0.542 4.542 10 H 0.064 0.936 11 C 0.001 3.999 12 N -0.934 5.934 13 Si 0.965 3.035 14 H -0.260 1.260 15 H -0.279 1.279 16 H -0.278 1.278 17 C -0.126 4.126 18 C -0.082 4.082 19 S -0.119 6.119 20 C -0.142 4.142 21 H 0.130 0.870 22 H 0.095 0.905 23 H 0.089 0.911 24 H 0.154 0.846 25 H 0.137 0.863 26 H 0.070 0.930 27 H 0.064 0.936 28 H -0.013 1.013 29 H -0.009 1.009 30 H 0.263 0.737 31 H 0.130 0.870 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.872 -15.130 9.545 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.111 5.889 3 C -0.214 4.214 4 C -0.136 4.136 5 C -0.136 4.136 6 C -0.068 4.068 7 C -0.102 4.102 8 C 0.001 3.999 9 C -0.580 4.580 10 H 0.082 0.918 11 C -0.197 4.197 12 N -0.574 5.574 13 Si 0.790 3.210 14 H -0.183 1.183 15 H -0.205 1.205 16 H -0.204 1.204 17 C -0.151 4.151 18 C -0.201 4.201 19 S 0.123 5.877 20 C -0.311 4.311 21 H 0.148 0.852 22 H 0.114 0.886 23 H 0.108 0.892 24 H 0.172 0.828 25 H 0.155 0.845 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.005 0.995 29 H 0.009 0.991 30 H 0.072 0.928 31 H 0.148 0.852 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.147 -17.434 9.375 19.911 hybrid contribution -0.458 3.544 -0.551 3.616 sum -2.605 -13.890 8.825 16.661 Atomic orbital electron populations 1.23834 0.91715 1.08653 1.06526 1.85445 1.09643 1.01368 1.92471 1.21359 0.94362 0.98074 1.07572 1.21336 0.98929 0.92202 1.01165 1.21217 0.96074 0.96077 1.00221 1.20201 0.93712 0.96019 0.96908 1.20582 1.01425 0.89850 0.98338 1.18902 0.94786 0.94759 0.91454 1.21725 1.47754 0.95691 0.92858 0.91753 1.25982 0.95096 1.03462 0.95165 1.70121 1.50981 1.38272 0.98049 0.85394 0.77810 0.79109 0.78711 1.18338 1.20470 1.20419 1.21112 0.99965 0.90984 1.03045 1.21362 0.95989 0.96398 1.06308 1.85231 0.98156 1.12053 1.92223 1.23816 0.97325 1.03853 1.06082 0.85209 0.88626 0.89162 0.82803 0.84499 0.91118 0.91727 0.99460 0.99088 0.92789 0.85213 0.90164 0.89019 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.15 113.37 1.04 -1.08 16 2 S -0.13 -3.25 21.33 -56.49 -1.21 -4.45 16 3 C -0.10 -2.90 6.12 22.71 0.14 -2.76 16 4 C -0.11 -3.19 9.36 22.39 0.21 -2.98 16 5 C -0.11 -3.74 9.69 22.29 0.22 -3.52 16 6 C -0.06 -2.39 5.14 -19.85 -0.10 -2.49 16 7 C -0.06 -2.66 5.28 29.85 0.16 -2.51 16 8 C 0.04 2.02 4.95 29.85 0.15 2.17 16 9 C -0.54 -30.61 9.11 25.60 0.23 -30.38 16 10 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 11 C 0.00 0.04 5.46 84.66 0.46 0.50 16 12 N -0.93 -57.09 13.29 21.45 0.28 -56.80 16 13 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 14 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 16 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 17 C -0.13 -4.42 9.01 22.39 0.20 -4.22 16 18 C -0.08 -2.69 6.12 22.71 0.14 -2.55 16 19 S -0.12 -3.31 21.33 -56.49 -1.21 -4.51 16 20 C -0.14 -3.09 9.15 113.37 1.04 -2.06 16 21 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.09 1.27 7.76 -2.39 -0.02 1.25 16 23 H 0.09 1.32 7.74 -2.39 -0.02 1.30 16 24 H 0.15 3.31 5.88 -2.91 -0.02 3.29 16 25 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 26 H 0.07 2.76 8.08 -2.39 -0.02 2.74 16 27 H 0.06 2.56 8.08 -2.39 -0.02 2.54 16 28 H -0.01 -0.76 8.14 -2.39 -0.02 -0.77 16 29 H -0.01 -0.54 8.14 -2.38 -0.02 -0.55 16 30 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 31 H 0.13 4.30 5.88 -2.91 -0.02 4.28 16 32 H 0.08 1.90 7.75 -2.39 -0.02 1.88 16 33 H 0.09 1.88 7.75 -2.39 -0.02 1.86 16 34 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -67.31 310.94 4.86 -62.45 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 1.08 Total: 9.27 kcal Atomic # 6 Polarization: -55.75 SS G_CDS: 3.88 Total: -51.88 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.28 Total: -56.80 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -6.55 SS G_CDS: -2.41 Total: -8.96 kcal Total: -67.31 4.86 -62.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260690043.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.669 kcal (2) G-P(sol) polarization free energy of solvation -67.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds