Wall clock time and date at job start Mon Mar 30 2020 08:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31298 * 1 3 3 Si 1.86805 * 119.99748 * 2 1 4 4 H 1.48503 * 109.46840 * 274.97999 * 3 2 1 5 5 H 1.48498 * 109.46954 * 34.98120 * 3 2 1 6 6 H 1.48497 * 109.46941 * 154.98235 * 3 2 1 7 7 C 1.38985 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99476 * 185.91747 * 7 2 1 9 9 N 1.37326 * 120.00099 * 5.91508 * 7 2 1 10 10 C 1.36561 * 126.09513 * 174.42085 * 9 7 2 11 11 C 1.35507 * 107.52456 * 180.12211 * 10 9 7 12 12 O 1.36183 * 126.05007 * 179.87421 * 11 10 9 13 13 C 1.42903 * 117.00160 * 179.71966 * 12 11 10 14 14 C 1.52991 * 109.47214 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.68208 * 174.68163 * 14 13 12 16 16 C 1.53096 * 109.58129 * 54.35021 * 14 13 12 17 17 C 1.52578 * 109.95568 * 177.16691 * 16 14 13 18 18 C 1.52581 * 110.72706 * 70.68377 * 17 16 14 19 19 C 1.53095 * 109.95183 * 289.31958 * 18 17 16 20 20 S 1.81749 * 109.57508 * 294.99393 * 14 13 12 21 21 C 1.40501 * 107.89728 * 359.61924 * 11 10 9 22 22 N 1.30947 * 108.41128 * 0.23254 * 21 11 10 23 23 H 0.97003 * 119.99891 * 359.97438 * 1 2 3 24 24 H 1.08004 * 126.24017 * 359.97438 * 10 9 7 25 25 H 1.09000 * 109.46822 * 59.99587 * 13 12 11 26 26 H 1.09007 * 109.46650 * 299.99991 * 13 12 11 27 27 H 1.08998 * 109.38612 * 57.02466 * 16 14 13 28 28 H 1.08991 * 109.31001 * 297.27191 * 16 14 13 29 29 H 1.08993 * 109.23083 * 310.35749 * 17 16 14 30 30 H 1.09004 * 109.22424 * 191.00162 * 17 16 14 31 31 H 1.08996 * 109.39194 * 169.17338 * 18 17 16 32 32 H 1.09000 * 109.31142 * 49.41359 * 18 17 16 33 33 H 1.09007 * 109.58034 * 303.21698 * 19 18 17 34 34 H 1.09000 * 109.57787 * 182.82827 * 19 18 17 35 35 H 1.08002 * 125.79622 * 180.24293 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.3891 2.1072 -1.3948 5 1 1.5009 2.6200 0.8027 6 1 3.5931 1.4122 0.5921 7 6 2.0079 -1.2036 0.0005 8 1 3.0836 -1.2060 0.0970 9 7 1.3268 -2.3898 -0.1215 10 6 1.8859 -3.6298 -0.2429 11 6 0.8741 -4.5259 -0.3402 12 8 1.0081 -5.8741 -0.4779 13 6 -0.1952 -6.6410 -0.5567 14 6 0.1535 -8.1230 -0.7073 15 1 -0.7579 -8.7199 -0.6730 16 6 1.0882 -8.5481 0.4283 17 6 1.3854 -10.0412 0.3267 18 6 2.2838 -10.3327 -0.8716 19 6 1.5009 -10.1340 -2.1721 20 16 0.9979 -8.3917 -2.2941 21 6 -0.3376 -3.8184 -0.2682 22 7 -0.0655 -2.5442 -0.1375 23 1 -0.4850 0.8401 0.0004 24 1 2.9421 -3.8550 -0.2606 25 1 -0.7779 -6.3150 -1.4183 26 1 -0.7787 -6.4959 0.3525 27 1 0.6124 -8.3382 1.3862 28 1 2.0203 -7.9878 0.3567 29 1 0.4486 -10.5869 0.2142 30 1 1.8845 -10.3706 1.2381 31 1 2.6383 -11.3619 -0.8163 32 1 3.1371 -9.6546 -0.8558 33 1 0.6157 -10.7701 -2.1664 34 1 2.1328 -10.3920 -3.0219 35 1 -1.3258 -4.2519 -0.3127 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260752451.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:22:13 Heat of formation + Delta-G solvation = 31.307165 kcal Electronic energy + Delta-G solvation = -17916.698415 eV Core-core repulsion = 15042.846181 eV Total energy + Delta-G solvation = -2873.852234 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.58138 -37.71217 -36.38106 -33.39493 -32.28550 -30.21601 -28.72183 -27.42724 -24.87001 -24.74225 -21.94467 -20.83116 -20.35975 -19.52864 -17.84044 -16.72034 -15.87278 -15.34282 -15.26629 -15.02363 -14.41223 -13.96660 -13.93286 -13.46874 -13.30791 -13.18065 -13.00244 -12.42053 -12.17468 -11.68544 -11.52433 -11.31265 -11.21604 -11.01943 -10.87853 -10.78926 -10.49520 -10.35098 -10.27527 -9.52204 -9.23983 -8.73511 -8.09141 -7.51782 -6.68333 -6.52655 -4.19387 1.77860 2.60465 2.99808 3.08683 3.13630 3.63604 3.80245 4.11685 4.25354 4.53975 4.64781 4.71079 4.83122 4.94457 5.04653 5.07933 5.18586 5.36593 5.49176 5.55182 5.71395 5.72505 5.83921 5.90295 5.92765 6.00921 6.20463 6.33153 6.65014 6.85246 7.04199 7.33572 7.60393 8.01075 8.55160 8.80438 9.41851 9.65489 10.44462 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.047291 B = 0.003716 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.941807 B = 7532.304293 C = 7636.263268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.321 4.321 8 H 0.117 0.883 9 N -0.143 5.143 10 C -0.074 4.074 11 C -0.069 4.069 12 O -0.300 6.300 13 C 0.091 3.909 14 C -0.045 4.045 15 H 0.096 0.904 16 C -0.116 4.116 17 C -0.128 4.128 18 C -0.121 4.121 19 C -0.091 4.091 20 S -0.238 6.238 21 C -0.109 4.109 22 N -0.247 5.247 23 H 0.273 0.727 24 H 0.150 0.850 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.732 -16.521 -0.435 16.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.170 4.170 3 Si 0.758 3.242 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.453 4.453 8 H 0.135 0.865 9 N 0.085 4.915 10 C -0.221 4.221 11 C -0.125 4.125 12 O -0.213 6.213 13 C 0.013 3.987 14 C -0.173 4.173 15 H 0.114 0.886 16 C -0.155 4.155 17 C -0.166 4.166 18 C -0.160 4.160 19 C -0.240 4.240 20 S -0.011 6.011 21 C -0.282 4.282 22 N -0.081 5.081 23 H 0.084 0.916 24 H 0.168 0.832 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.392 -14.634 -1.180 14.747 hybrid contribution 0.135 -1.005 0.825 1.308 sum 1.527 -15.639 -0.355 15.718 Atomic orbital electron populations 1.70217 1.06148 1.27823 1.36136 1.25615 0.95683 1.00184 0.95529 0.85814 0.79483 0.80039 0.78835 1.19658 1.20176 1.18753 1.19881 0.92189 0.80537 1.52737 0.86523 1.44476 1.03511 1.03693 1.39832 1.20922 0.97060 0.84796 1.19303 1.18195 0.93380 0.82257 1.18647 1.85860 1.28904 1.15001 1.91552 1.22055 0.87975 0.87693 1.00996 1.23327 1.00387 0.98593 0.95028 0.88573 1.21727 1.01011 0.95461 0.97286 1.21546 0.99824 0.96655 0.98564 1.21709 0.98988 1.02148 0.93185 1.23458 1.02795 0.96252 1.01480 1.87357 1.75355 1.13442 1.24963 1.23550 0.96749 0.93140 1.14757 1.78108 0.90958 1.14338 1.24730 0.91615 0.83246 0.92510 0.91943 0.90917 0.89282 0.92179 0.91190 0.91316 0.90371 0.90404 0.88117 0.83399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.78 11.84 55.49 0.66 -21.12 16 2 C 0.05 1.21 5.50 -17.50 -0.10 1.11 16 3 Si 0.93 19.22 29.56 -169.99 -5.02 14.20 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.32 -8.72 10.24 -14.81 -0.15 -8.87 16 8 H 0.12 2.86 7.84 -52.48 -0.41 2.45 16 9 N -0.14 -4.03 3.74 -11.43 -0.04 -4.07 16 10 C -0.07 -1.88 11.49 -16.42 -0.19 -2.07 16 11 C -0.07 -1.67 6.97 -39.70 -0.28 -1.95 16 12 O -0.30 -6.18 9.14 -20.32 -0.19 -6.37 16 13 C 0.09 1.48 4.69 37.15 0.17 1.65 16 14 C -0.04 -0.59 2.94 -26.69 -0.08 -0.67 16 15 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 16 C -0.12 -1.40 4.79 -26.90 -0.13 -1.53 16 17 C -0.13 -1.20 5.61 -27.16 -0.15 -1.36 16 18 C -0.12 -1.12 5.75 -26.90 -0.15 -1.27 16 19 C -0.09 -0.91 6.45 37.21 0.24 -0.67 16 20 S -0.24 -3.36 21.49 -107.50 -2.31 -5.67 16 21 C -0.11 -2.74 11.09 -17.08 -0.19 -2.93 16 22 N -0.25 -7.14 10.43 30.78 0.32 -6.82 16 23 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 24 H 0.15 3.37 8.06 -52.48 -0.42 2.95 16 25 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 26 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.09 1.28 7.55 -51.93 -0.39 0.88 16 29 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 33 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.15 3.25 7.70 -52.49 -0.40 2.84 16 LS Contribution 303.66 15.07 4.58 4.58 Total: -1.00 -31.55 303.66 -7.99 -39.54 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -4.98 Total: 4.29 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -1.00 Total: -18.55 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.94 Total: -32.02 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.19 Total: -6.37 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -2.31 Total: -5.67 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.55 -7.99 -39.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260752451.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.846 kcal (2) G-P(sol) polarization free energy of solvation -31.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds