Wall clock time and date at job start Mon Mar 30 2020 08:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31298 * 1 3 3 Si 1.86805 * 119.99748 * 2 1 4 4 H 1.48503 * 109.46840 * 274.97999 * 3 2 1 5 5 H 1.48498 * 109.46954 * 34.98120 * 3 2 1 6 6 H 1.48497 * 109.46941 * 154.98235 * 3 2 1 7 7 C 1.38985 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99476 * 185.91747 * 7 2 1 9 9 N 1.37326 * 120.00099 * 5.91508 * 7 2 1 10 10 C 1.36561 * 126.09513 * 174.42085 * 9 7 2 11 11 C 1.35507 * 107.52456 * 180.12211 * 10 9 7 12 12 O 1.36183 * 126.05007 * 179.87421 * 11 10 9 13 13 C 1.42903 * 117.00160 * 179.71966 * 12 11 10 14 14 C 1.52991 * 109.47214 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.68208 * 174.68163 * 14 13 12 16 16 C 1.53096 * 109.58129 * 54.35021 * 14 13 12 17 17 C 1.52578 * 109.95568 * 177.16691 * 16 14 13 18 18 C 1.52581 * 110.72706 * 70.68377 * 17 16 14 19 19 C 1.53095 * 109.95183 * 289.31958 * 18 17 16 20 20 S 1.81749 * 109.57508 * 294.99393 * 14 13 12 21 21 C 1.40501 * 107.89728 * 359.61924 * 11 10 9 22 22 N 1.30947 * 108.41128 * 0.23254 * 21 11 10 23 23 H 0.97003 * 119.99891 * 359.97438 * 1 2 3 24 24 H 1.08004 * 126.24017 * 359.97438 * 10 9 7 25 25 H 1.09000 * 109.46822 * 59.99587 * 13 12 11 26 26 H 1.09007 * 109.46650 * 299.99991 * 13 12 11 27 27 H 1.08998 * 109.38612 * 57.02466 * 16 14 13 28 28 H 1.08991 * 109.31001 * 297.27191 * 16 14 13 29 29 H 1.08993 * 109.23083 * 310.35749 * 17 16 14 30 30 H 1.09004 * 109.22424 * 191.00162 * 17 16 14 31 31 H 1.08996 * 109.39194 * 169.17338 * 18 17 16 32 32 H 1.09000 * 109.31142 * 49.41359 * 18 17 16 33 33 H 1.09007 * 109.58034 * 303.21698 * 19 18 17 34 34 H 1.09000 * 109.57787 * 182.82827 * 19 18 17 35 35 H 1.08002 * 125.79622 * 180.24293 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.3891 2.1072 -1.3948 5 1 1.5009 2.6200 0.8027 6 1 3.5931 1.4122 0.5921 7 6 2.0079 -1.2036 0.0005 8 1 3.0836 -1.2060 0.0970 9 7 1.3268 -2.3898 -0.1215 10 6 1.8859 -3.6298 -0.2429 11 6 0.8741 -4.5259 -0.3402 12 8 1.0081 -5.8741 -0.4779 13 6 -0.1952 -6.6410 -0.5567 14 6 0.1535 -8.1230 -0.7073 15 1 -0.7579 -8.7199 -0.6730 16 6 1.0882 -8.5481 0.4283 17 6 1.3854 -10.0412 0.3267 18 6 2.2838 -10.3327 -0.8716 19 6 1.5009 -10.1340 -2.1721 20 16 0.9979 -8.3917 -2.2941 21 6 -0.3376 -3.8184 -0.2682 22 7 -0.0655 -2.5442 -0.1375 23 1 -0.4850 0.8401 0.0004 24 1 2.9421 -3.8550 -0.2606 25 1 -0.7779 -6.3150 -1.4183 26 1 -0.7787 -6.4959 0.3525 27 1 0.6124 -8.3382 1.3862 28 1 2.0203 -7.9878 0.3567 29 1 0.4486 -10.5869 0.2142 30 1 1.8845 -10.3706 1.2381 31 1 2.6383 -11.3619 -0.8163 32 1 3.1371 -9.6546 -0.8558 33 1 0.6157 -10.7701 -2.1664 34 1 2.1328 -10.3920 -3.0219 35 1 -1.3258 -4.2519 -0.3127 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260752451.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:22:11 Heat of formation + Delta-G solvation = 12.916919 kcal Electronic energy + Delta-G solvation = -17917.495876 eV Core-core repulsion = 15042.846181 eV Total energy + Delta-G solvation = -2874.649695 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.52790 -39.14252 -37.47874 -35.32533 -33.40540 -32.24459 -30.05573 -28.96509 -26.79607 -25.86824 -23.20377 -22.18860 -21.74291 -21.30587 -19.67235 -17.91896 -17.62849 -17.13924 -16.61934 -16.08109 -15.75534 -15.36926 -15.14806 -14.96859 -14.95267 -14.44609 -14.28971 -13.65440 -13.53813 -13.31452 -12.89323 -12.77753 -12.70545 -12.35450 -12.14760 -12.05781 -11.94623 -11.68160 -11.26149 -11.13537 -10.73153 -10.48838 -10.14894 -8.66238 -8.57039 -8.48198 -6.24608 0.79054 1.29440 1.40380 1.58431 1.66461 1.75264 2.08992 2.28948 2.51001 2.95666 3.06342 3.64089 3.74730 3.90022 4.00361 4.21560 4.23973 4.27673 4.43228 4.48633 4.53699 4.67659 4.75995 4.79827 4.90131 5.00652 5.06669 5.09526 5.16142 5.20328 5.38564 5.42814 5.70938 6.03993 6.63328 6.96175 7.42913 7.62599 8.52086 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.047291 B = 0.003716 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.941807 B = 7532.304293 C = 7636.263268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C -0.003 4.003 3 Si 1.019 2.981 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.246 1.246 7 C -0.356 4.356 8 H 0.135 0.865 9 N -0.165 5.165 10 C -0.091 4.091 11 C -0.058 4.058 12 O -0.303 6.303 13 C 0.082 3.918 14 C -0.029 4.029 15 H 0.125 0.875 16 C -0.115 4.115 17 C -0.123 4.123 18 C -0.120 4.120 19 C -0.072 4.072 20 S -0.315 6.315 21 C -0.114 4.114 22 N -0.295 5.295 23 H 0.278 0.722 24 H 0.171 0.829 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.404 -18.104 -0.098 18.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.215 4.215 3 Si 0.838 3.162 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.169 1.169 7 C -0.487 4.487 8 H 0.152 0.848 9 N 0.062 4.938 10 C -0.237 4.237 11 C -0.114 4.114 12 O -0.217 6.217 13 C 0.005 3.995 14 C -0.157 4.157 15 H 0.142 0.858 16 C -0.154 4.154 17 C -0.161 4.161 18 C -0.159 4.159 19 C -0.219 4.219 20 S -0.089 6.089 21 C -0.287 4.287 22 N -0.130 5.130 23 H 0.087 0.913 24 H 0.188 0.812 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.070 -16.256 -0.841 16.409 hybrid contribution -0.100 -0.709 0.698 1.000 sum 1.970 -16.965 -0.144 17.080 Atomic orbital electron populations 1.70367 1.08268 1.29158 1.37388 1.26822 0.96530 1.04023 0.94074 0.84582 0.78481 0.74179 0.78990 1.19158 1.19691 1.16907 1.20578 0.93345 0.81065 1.53714 0.84785 1.44748 1.03450 1.04709 1.40885 1.21452 0.98480 0.84596 1.19212 1.18266 0.92583 0.83760 1.16787 1.85882 1.31372 1.13226 1.91195 1.22372 0.86696 0.89203 1.01210 1.23301 1.01625 0.96363 0.94430 0.85753 1.21699 0.99352 0.97339 0.96966 1.21525 1.00828 0.94438 0.99260 1.21709 0.98247 1.03318 0.92625 1.23535 1.03750 0.92260 1.02398 1.87603 1.76251 1.18578 1.26495 1.23977 0.98310 0.92492 1.13940 1.78003 0.92095 1.16279 1.26586 0.91262 0.81184 0.93241 0.90785 0.90374 0.92171 0.90484 0.89864 0.88474 0.92135 0.88444 0.87132 0.80926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.37 11.84 21.66 0.26 -47.11 16 2 C 0.00 -0.16 5.50 84.95 0.47 0.31 16 3 Si 1.02 39.30 29.56 68.60 2.03 41.32 16 4 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 5 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 6 H -0.25 -8.69 7.11 99.48 0.71 -7.98 16 7 C -0.36 -19.62 10.24 84.01 0.86 -18.76 16 8 H 0.13 6.58 7.84 -2.91 -0.02 6.56 16 9 N -0.16 -9.53 3.74 -190.08 -0.71 -10.24 16 10 C -0.09 -4.70 11.49 83.33 0.96 -3.74 16 11 C -0.06 -2.83 6.97 22.19 0.15 -2.68 16 12 O -0.30 -12.53 9.14 -95.64 -0.87 -13.41 16 13 C 0.08 2.63 4.69 71.98 0.34 2.97 16 14 C -0.03 -0.72 2.94 30.62 0.09 -0.63 16 15 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 16 C -0.11 -2.57 4.79 30.49 0.15 -2.42 16 17 C -0.12 -1.92 5.61 30.32 0.17 -1.75 16 18 C -0.12 -1.87 5.75 30.49 0.18 -1.69 16 19 C -0.07 -1.24 6.45 72.01 0.46 -0.77 16 20 S -0.31 -8.66 21.49 -56.49 -1.21 -9.87 16 21 C -0.11 -5.84 11.09 85.38 0.95 -4.89 16 22 N -0.29 -17.54 10.43 -56.54 -0.59 -18.13 16 23 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 24 H 0.17 7.75 8.06 -2.91 -0.02 7.73 16 25 H 0.05 1.66 8.10 -2.39 -0.02 1.64 16 26 H 0.07 2.19 8.10 -2.38 -0.02 2.17 16 27 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 1.70 7.55 -2.39 -0.02 1.68 16 29 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 30 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.17 8.05 -2.39 -0.02 1.15 16 33 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.17 7.61 7.70 -2.91 -0.02 7.59 16 Total: -1.00 -70.59 303.66 4.74 -65.85 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 1.07 Total: 25.66 kcal Atomic # 6 Polarization: -38.84 SS G_CDS: 4.77 Total: -34.07 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -1.04 Total: -75.49 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.87 Total: -13.41 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.32 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.21 Total: -9.87 kcal Total: -70.59 4.74 -65.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260752451.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.770 kcal (2) G-P(sol) polarization free energy of solvation -70.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds