Wall clock time and date at job start Mon Mar 30 2020 06:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35985 * 117.00149 * 2 1 4 4 C 1.39189 * 120.06851 * 276.69860 * 3 2 1 5 5 O 1.36014 * 120.06030 * 359.95642 * 4 3 2 6 6 C 1.38514 * 119.88190 * 179.97438 * 4 3 2 7 7 C 1.38284 * 120.01102 * 359.97438 * 6 4 3 8 8 C 1.38316 * 120.13277 * 359.78786 * 7 6 4 9 9 Cl 1.73601 * 119.94113 * 180.23549 * 8 7 6 10 10 C 1.38387 * 120.12042 * 0.46916 * 8 7 6 11 11 C 1.50697 * 120.00665 * 179.78897 * 10 8 7 12 12 C 1.50699 * 115.54766 * 180.82984 * 11 10 8 13 13 H 1.07997 * 120.00565 * 265.17316 * 12 11 10 14 14 C 1.37881 * 119.99617 * 85.17610 * 12 11 10 15 15 N 1.31514 * 120.00440 * 4.40467 * 14 12 11 16 16 Si 1.86806 * 119.99661 * 184.40125 * 14 12 11 17 17 H 1.48502 * 109.46772 * 185.02215 * 16 14 12 18 18 H 1.48489 * 109.47329 * 305.02264 * 16 14 12 19 19 H 1.48498 * 109.46936 * 65.02589 * 16 14 12 20 20 C 1.52994 * 117.49857 * 326.49975 * 11 10 8 21 21 C 1.52993 * 117.50049 * 35.16255 * 11 10 8 22 22 H 1.09000 * 109.47626 * 185.13357 * 1 2 3 23 23 H 1.09004 * 109.46675 * 305.12823 * 1 2 3 24 24 H 1.09003 * 109.47579 * 65.12843 * 1 2 3 25 25 H 0.96697 * 114.00368 * 90.00134 * 5 4 3 26 26 H 1.08004 * 119.99660 * 179.97438 * 6 4 3 27 27 H 1.07995 * 119.93654 * 180.02562 * 7 6 4 28 28 H 0.97001 * 119.99371 * 354.72085 * 15 14 12 29 29 H 1.09004 * 117.50420 * 215.00243 * 20 11 10 30 30 H 1.09005 * 117.50279 * 0.02863 * 20 11 10 31 31 H 1.09006 * 117.50140 * 359.97099 * 21 11 10 32 32 H 1.09004 * 117.50349 * 144.99659 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 2.2378 1.8968 -1.1964 5 8 1.8085 1.3553 -2.3678 6 6 2.8667 3.1309 -1.1918 7 6 3.3027 3.6807 -0.0002 8 6 3.1083 3.0025 1.1895 9 17 3.6522 3.7000 2.6833 10 6 2.4854 1.7667 1.1908 11 6 2.2793 1.0280 2.4879 12 6 1.6086 -0.3165 2.3707 13 1 0.5405 -0.4008 2.5060 14 6 2.3588 -1.4389 2.0907 15 7 3.6687 -1.3517 2.0117 16 14 1.5145 -3.0838 1.8237 17 1 2.5398 -4.1457 1.6610 18 1 0.6591 -3.3972 2.9963 19 1 0.6738 -3.0160 0.6016 20 6 3.3459 1.1932 3.5722 21 6 1.9783 1.8611 3.7353 22 1 -0.3634 -1.0235 0.0920 23 1 -0.3633 0.5914 0.8405 24 1 -0.3634 0.4322 -0.9323 25 1 0.9023 1.5965 -2.6040 26 1 3.0165 3.6640 -2.1191 27 1 3.7925 4.6431 0.0020 28 1 4.1016 -0.4859 2.0741 29 1 3.5627 0.3295 4.2009 30 1 4.1966 1.8367 3.3476 31 1 1.9299 2.9438 3.6179 32 1 1.2952 1.4369 4.4713 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260802828.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:08 Heat of formation + Delta-G solvation = -10.279159 kcal Electronic energy + Delta-G solvation = -19338.555367 eV Core-core repulsion = 16292.730263 eV Total energy + Delta-G solvation = -3045.825104 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.97536 -37.56378 -36.78847 -35.61560 -35.40470 -31.72969 -29.75591 -28.79979 -26.19047 -25.08382 -22.67409 -21.76024 -21.30793 -19.86009 -17.81153 -17.12285 -16.80644 -15.75337 -15.28054 -14.62153 -14.58027 -14.18748 -13.74582 -13.33127 -12.92402 -12.82276 -12.45026 -12.31772 -11.89953 -11.53860 -11.29129 -10.96053 -10.64699 -10.46363 -10.04928 -9.80113 -9.73105 -9.40671 -9.24664 -9.05626 -8.44609 -8.03636 -7.95522 -7.52864 -6.18283 -3.88027 1.43585 1.66877 2.57339 3.46798 3.50042 3.67190 3.79076 4.44625 4.56751 4.66369 5.18386 5.31635 5.35979 5.59153 5.71852 5.78022 5.92951 6.08965 6.16609 6.29215 6.33025 6.41600 6.43206 6.56866 6.66893 6.71289 6.89161 7.02337 7.29652 7.40140 7.81258 8.27691 8.46827 8.49487 8.99233 9.82149 11.20924 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.011473 C = 0.007857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.003781 B = 2439.924352 C = 3562.812037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 O -0.272 6.272 3 C 0.117 3.883 4 C 0.071 3.929 5 O -0.486 6.486 6 C -0.147 4.147 7 C -0.112 4.112 8 C -0.049 4.049 9 Cl -0.065 7.065 10 C -0.016 4.016 11 C 0.042 3.958 12 C -0.550 4.550 13 H 0.050 0.950 14 C 0.050 3.950 15 N -0.902 5.902 16 Si 1.058 2.942 17 H -0.285 1.285 18 H -0.293 1.293 19 H -0.285 1.285 20 C -0.175 4.175 21 C -0.193 4.193 22 H 0.084 0.916 23 H 0.046 0.954 24 H 0.017 0.983 25 H 0.379 0.621 26 H 0.131 0.869 27 H 0.129 0.871 28 H 0.275 0.725 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.551 8.998 -4.258 10.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 O -0.187 6.187 3 C 0.072 3.928 4 C 0.026 3.974 5 O -0.295 6.295 6 C -0.165 4.165 7 C -0.131 4.131 8 C -0.076 4.076 9 Cl -0.036 7.036 10 C -0.018 4.018 11 C 0.042 3.958 12 C -0.587 4.587 13 H 0.069 0.931 14 C -0.157 4.157 15 N -0.536 5.536 16 Si 0.887 3.113 17 H -0.211 1.211 18 H -0.220 1.220 19 H -0.211 1.211 20 C -0.213 4.213 21 C -0.230 4.230 22 H 0.102 0.898 23 H 0.065 0.935 24 H 0.035 0.965 25 H 0.233 0.767 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.560 6.996 -4.412 9.004 hybrid contribution -0.804 2.089 0.259 2.253 sum -4.364 9.084 -4.153 10.900 Atomic orbital electron populations 1.22656 0.81054 1.02623 0.97966 1.86486 1.17870 1.21294 1.93066 1.18598 0.97350 0.87396 0.89485 1.19084 1.00765 0.92243 0.85333 1.84915 1.34103 1.73687 1.36805 1.20985 1.02597 0.95084 0.97878 1.20729 1.01712 1.00244 0.90418 1.20763 1.04178 0.95787 0.86879 1.98282 1.88248 1.83782 1.33313 1.20326 0.93574 0.90615 0.97238 1.17891 1.00257 0.95279 0.82408 1.20926 0.94594 0.90131 1.53053 0.93137 1.25409 0.95523 1.02228 0.92531 1.70675 1.09030 1.28866 1.45078 0.83750 0.75312 0.76011 0.76187 1.21091 1.21985 1.21121 1.23324 0.91978 1.01800 1.04148 1.23343 0.99916 0.97764 1.01979 0.89787 0.93500 0.96464 0.76694 0.85154 0.85321 0.91396 0.89890 0.89513 0.89747 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.96 9.72 101.05 0.98 1.94 16 2 O -0.27 -6.32 6.67 -34.19 -0.23 -6.55 16 3 C 0.12 2.58 5.67 -39.12 -0.22 2.36 16 4 C 0.07 1.33 6.72 -39.13 -0.26 1.06 16 5 O -0.49 -8.12 13.29 -34.28 -0.46 -8.58 16 6 C -0.15 -2.37 9.98 -39.46 -0.39 -2.77 16 7 C -0.11 -1.85 9.82 -39.54 -0.39 -2.24 16 8 C -0.05 -0.96 6.16 -39.50 -0.24 -1.20 16 9 Cl -0.07 -1.15 21.48 -51.86 -1.11 -2.27 16 10 C -0.02 -0.35 5.68 -104.46 -0.59 -0.95 16 11 C 0.04 1.02 1.59 -156.82 -0.25 0.77 16 12 C -0.55 -14.43 5.33 -34.44 -0.18 -14.61 16 13 H 0.05 1.32 6.85 -52.49 -0.36 0.96 16 14 C 0.05 1.38 4.28 -17.82 -0.08 1.31 16 15 N -0.90 -26.87 13.50 55.43 0.75 -26.12 16 16 Si 1.06 25.06 29.77 -169.99 -5.06 20.00 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.33 6.74 56.52 0.38 -5.95 16 20 C -0.18 -4.09 7.45 -26.70 -0.20 -4.29 16 21 C -0.19 -4.19 9.18 -26.70 -0.25 -4.43 16 22 H 0.08 1.52 7.69 -51.93 -0.40 1.12 16 23 H 0.05 0.88 7.37 -51.93 -0.38 0.50 16 24 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.38 4.29 9.06 45.56 0.41 4.70 16 26 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 27 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 28 H 0.27 8.24 6.20 -40.82 -0.25 7.98 16 29 H 0.08 2.10 8.14 -51.93 -0.42 1.67 16 30 H 0.09 1.92 5.27 -51.93 -0.27 1.64 16 31 H 0.08 1.67 5.48 -51.93 -0.28 1.39 16 32 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 LS Contribution 275.70 15.07 4.15 4.15 Total: -1.00 -30.96 275.70 -6.50 -37.46 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -2.47 Total: 4.94 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -2.08 Total: -23.04 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.75 Total: -26.12 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.68 Total: -15.12 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.06 Total: 20.00 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.11 Total: -2.27 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.96 -6.50 -37.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260802828.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.178 kcal (2) G-P(sol) polarization free energy of solvation -30.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds