Wall clock time and date at job start Mon Mar 30 2020 06:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35985 * 117.00149 * 2 1 4 4 C 1.39189 * 120.06851 * 276.69860 * 3 2 1 5 5 O 1.36014 * 120.06030 * 359.95642 * 4 3 2 6 6 C 1.38514 * 119.88190 * 179.97438 * 4 3 2 7 7 C 1.38284 * 120.01102 * 359.97438 * 6 4 3 8 8 C 1.38316 * 120.13277 * 359.78786 * 7 6 4 9 9 Cl 1.73601 * 119.94113 * 180.23549 * 8 7 6 10 10 C 1.38387 * 120.12042 * 0.46916 * 8 7 6 11 11 C 1.50697 * 120.00665 * 179.78897 * 10 8 7 12 12 C 1.50699 * 115.54766 * 180.82984 * 11 10 8 13 13 H 1.07997 * 120.00565 * 265.17316 * 12 11 10 14 14 C 1.37881 * 119.99617 * 85.17610 * 12 11 10 15 15 N 1.31514 * 120.00440 * 4.40467 * 14 12 11 16 16 Si 1.86806 * 119.99661 * 184.40125 * 14 12 11 17 17 H 1.48502 * 109.46772 * 185.02215 * 16 14 12 18 18 H 1.48489 * 109.47329 * 305.02264 * 16 14 12 19 19 H 1.48498 * 109.46936 * 65.02589 * 16 14 12 20 20 C 1.52994 * 117.49857 * 326.49975 * 11 10 8 21 21 C 1.52993 * 117.50049 * 35.16255 * 11 10 8 22 22 H 1.09000 * 109.47626 * 185.13357 * 1 2 3 23 23 H 1.09004 * 109.46675 * 305.12823 * 1 2 3 24 24 H 1.09003 * 109.47579 * 65.12843 * 1 2 3 25 25 H 0.96697 * 114.00368 * 90.00134 * 5 4 3 26 26 H 1.08004 * 119.99660 * 179.97438 * 6 4 3 27 27 H 1.07995 * 119.93654 * 180.02562 * 7 6 4 28 28 H 0.97001 * 119.99371 * 354.72085 * 15 14 12 29 29 H 1.09004 * 117.50420 * 215.00243 * 20 11 10 30 30 H 1.09005 * 117.50279 * 0.02863 * 20 11 10 31 31 H 1.09006 * 117.50140 * 359.97099 * 21 11 10 32 32 H 1.09004 * 117.50349 * 144.99659 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 2.2378 1.8968 -1.1964 5 8 1.8085 1.3553 -2.3678 6 6 2.8667 3.1309 -1.1918 7 6 3.3027 3.6807 -0.0002 8 6 3.1083 3.0025 1.1895 9 17 3.6522 3.7000 2.6833 10 6 2.4854 1.7667 1.1908 11 6 2.2793 1.0280 2.4879 12 6 1.6086 -0.3165 2.3707 13 1 0.5405 -0.4008 2.5060 14 6 2.3588 -1.4389 2.0907 15 7 3.6687 -1.3517 2.0117 16 14 1.5145 -3.0838 1.8237 17 1 2.5398 -4.1457 1.6610 18 1 0.6591 -3.3972 2.9963 19 1 0.6738 -3.0160 0.6016 20 6 3.3459 1.1932 3.5722 21 6 1.9783 1.8611 3.7353 22 1 -0.3634 -1.0235 0.0920 23 1 -0.3633 0.5914 0.8405 24 1 -0.3634 0.4322 -0.9323 25 1 0.9023 1.5965 -2.6040 26 1 3.0165 3.6640 -2.1191 27 1 3.7925 4.6431 0.0020 28 1 4.1016 -0.4859 2.0741 29 1 3.5627 0.3295 4.2009 30 1 4.1966 1.8367 3.3476 31 1 1.9299 2.9438 3.6179 32 1 1.2952 1.4369 4.4713 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260802828.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:07 Heat of formation + Delta-G solvation = -30.086962 kcal Electronic energy + Delta-G solvation = -19339.414298 eV Core-core repulsion = 16292.730263 eV Total energy + Delta-G solvation = -3046.684035 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.45350 -39.10016 -38.28789 -37.19910 -36.79921 -33.75650 -31.22495 -30.20735 -27.77032 -26.96662 -24.23690 -23.20654 -23.12123 -21.58011 -19.36866 -18.62595 -18.43578 -17.36232 -16.74577 -16.20851 -15.98652 -15.64322 -15.61675 -14.89270 -14.62702 -14.38344 -14.15156 -13.85244 -13.32706 -13.25290 -12.81645 -12.45582 -12.44227 -11.95764 -11.86088 -11.51947 -11.47450 -11.05906 -10.87908 -10.72254 -10.27960 -9.99567 -9.36712 -9.12882 -8.31794 -5.98191 0.03348 0.24724 1.14795 1.53834 1.62834 1.77362 2.38970 2.67808 3.13615 3.17160 3.45489 3.50728 3.87030 4.11662 4.27517 4.42328 4.44948 4.54665 4.61380 4.63079 4.74552 4.86911 4.89186 4.99845 5.14296 5.18322 5.28031 5.49469 5.52724 5.72695 6.23967 6.41873 6.64783 6.86639 7.03843 7.77023 9.08343 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.011473 C = 0.007857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.003781 B = 2439.924352 C = 3562.812037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.307 6.307 3 C 0.085 3.915 4 C 0.073 3.927 5 O -0.494 6.494 6 C -0.131 4.131 7 C -0.100 4.100 8 C -0.061 4.061 9 Cl -0.056 7.056 10 C -0.050 4.050 11 C 0.021 3.979 12 C -0.538 4.538 13 H 0.044 0.956 14 C 0.010 3.990 15 N -0.941 5.941 16 Si 1.087 2.913 17 H -0.299 1.299 18 H -0.277 1.277 19 H -0.263 1.263 20 C -0.179 4.179 21 C -0.175 4.175 22 H 0.083 0.917 23 H 0.035 0.965 24 H 0.054 0.946 25 H 0.403 0.597 26 H 0.172 0.828 27 H 0.167 0.833 28 H 0.261 0.739 29 H 0.052 0.948 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.224 10.946 -5.940 13.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.223 6.223 3 C 0.039 3.961 4 C 0.027 3.973 5 O -0.306 6.306 6 C -0.149 4.149 7 C -0.118 4.118 8 C -0.088 4.088 9 Cl -0.027 7.027 10 C -0.052 4.052 11 C 0.021 3.979 12 C -0.576 4.576 13 H 0.062 0.938 14 C -0.191 4.191 15 N -0.578 5.578 16 Si 0.912 3.088 17 H -0.225 1.225 18 H -0.203 1.203 19 H -0.189 1.189 20 C -0.216 4.216 21 C -0.212 4.212 22 H 0.101 0.899 23 H 0.054 0.946 24 H 0.072 0.928 25 H 0.261 0.739 26 H 0.189 0.811 27 H 0.184 0.816 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.284 8.966 -6.094 11.656 hybrid contribution -0.652 1.578 0.721 1.853 sum -4.936 10.543 -5.373 12.822 Atomic orbital electron populations 1.22769 0.79567 1.02727 0.99450 1.86368 1.19664 1.22764 1.93461 1.18947 0.98665 0.87648 0.90792 1.19127 1.00760 0.92633 0.84741 1.84851 1.36102 1.74033 1.35592 1.21416 1.00198 0.93901 0.99373 1.21156 1.00304 1.01171 0.89206 1.20920 1.04253 0.95235 0.88368 1.98273 1.88036 1.83241 1.33178 1.20166 0.96396 0.92192 0.96407 1.17986 1.00526 0.95308 0.84111 1.21084 0.94171 0.91318 1.50987 0.93795 1.26359 0.95308 1.05088 0.92307 1.70784 1.10220 1.28018 1.48813 0.83393 0.74863 0.72940 0.77589 1.22535 1.20318 1.18866 1.23203 0.93086 1.01236 1.04096 1.23370 0.98359 0.98771 1.00732 0.89897 0.94583 0.92805 0.73891 0.81064 0.81587 0.92833 0.92951 0.88391 0.87534 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.78 9.72 113.37 1.10 2.89 16 2 O -0.31 -14.16 6.67 -79.52 -0.53 -14.69 16 3 C 0.08 3.66 5.67 22.57 0.13 3.78 16 4 C 0.07 2.53 6.72 22.56 0.15 2.68 16 5 O -0.49 -14.96 13.29 -79.85 -1.06 -16.02 16 6 C -0.13 -3.66 9.98 22.35 0.22 -3.44 16 7 C -0.10 -2.90 9.82 22.30 0.22 -2.68 16 8 C -0.06 -2.25 6.16 22.32 0.14 -2.11 16 9 Cl -0.06 -1.89 21.48 -2.72 -0.06 -1.95 16 10 C -0.05 -2.21 5.68 -19.76 -0.11 -2.32 16 11 C 0.02 1.04 1.59 -53.68 -0.09 0.96 16 12 C -0.54 -28.79 5.33 25.60 0.14 -28.65 16 13 H 0.04 2.34 6.85 -2.91 -0.02 2.32 16 14 C 0.01 0.55 4.28 84.66 0.36 0.91 16 15 N -0.94 -57.91 13.50 21.45 0.29 -57.62 16 16 Si 1.09 51.10 29.77 68.60 2.04 53.14 16 17 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.26 -11.32 6.74 99.48 0.67 -10.65 16 20 C -0.18 -8.54 7.45 30.62 0.23 -8.31 16 21 C -0.18 -7.61 9.18 30.62 0.28 -7.33 16 22 H 0.08 2.95 7.69 -2.39 -0.02 2.93 16 23 H 0.04 1.35 7.37 -2.39 -0.02 1.33 16 24 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.40 7.67 9.06 -74.06 -0.67 7.00 16 26 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16 27 H 0.17 3.56 8.06 -2.91 -0.02 3.54 16 28 H 0.26 16.31 6.20 -92.71 -0.58 15.73 16 29 H 0.05 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.10 4.39 5.27 -2.38 -0.01 4.37 16 31 H 0.11 4.11 5.48 -2.38 -0.01 4.09 16 32 H 0.07 3.18 8.14 -2.38 -0.02 3.16 16 Total: -1.00 -68.78 275.70 4.10 -64.67 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.65 Total: 16.10 kcal Atomic # 6 Polarization: -46.40 SS G_CDS: 2.77 Total: -43.63 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 0.29 Total: -57.62 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -1.59 Total: -30.70 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 2.04 Total: 53.14 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -0.06 Total: -1.95 kcal Total: -68.78 4.10 -64.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260802828.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.587 kcal (2) G-P(sol) polarization free energy of solvation -68.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds