Wall clock time and date at job start Mon Mar 30 2020 07:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50695 * 109.47444 * 2 1 4 4 C 1.38261 * 119.96997 * 89.99540 * 3 2 1 5 5 C 1.38275 * 120.01405 * 179.97438 * 4 3 2 6 6 Cl 1.73598 * 120.02684 * 179.97438 * 5 4 3 7 7 C 1.38589 * 119.95032 * 0.02562 * 5 4 3 8 8 F 1.35102 * 120.03196 * 179.97438 * 7 5 4 9 9 C 1.38399 * 119.93897 * 0.27123 * 7 5 4 10 10 C 1.50704 * 120.00813 * 179.70355 * 9 7 5 11 11 C 1.50699 * 115.55037 * 294.34626 * 10 9 7 12 12 H 1.08000 * 120.00240 * 145.57665 * 11 10 9 13 13 C 1.37882 * 119.99988 * 325.58548 * 11 10 9 14 14 N 1.31514 * 119.99742 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00172 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47184 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47237 * 119.99542 * 15 13 11 18 18 H 1.48500 * 109.47134 * 239.99696 * 15 13 11 19 19 C 1.53006 * 117.50099 * 148.67318 * 10 9 7 20 20 C 1.53006 * 117.50060 * 80.01360 * 10 9 7 21 21 C 1.38217 * 119.97045 * 269.97973 * 3 2 1 22 22 H 1.08997 * 109.47143 * 300.00219 * 1 2 3 23 23 H 1.09004 * 109.47277 * 59.99671 * 1 2 3 24 24 H 1.09001 * 109.47355 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46985 * 240.00054 * 2 1 3 26 26 H 1.09004 * 109.47277 * 120.00328 * 2 1 3 27 27 H 1.08006 * 119.99039 * 0.03011 * 4 3 2 28 28 H 0.97001 * 119.99964 * 180.02562 * 14 13 11 29 29 H 1.08993 * 117.49521 * 0.02562 * 19 10 9 30 30 H 1.08995 * 117.49207 * 145.02191 * 19 10 9 31 31 H 1.08993 * 117.50168 * 214.98138 * 20 10 9 32 32 H 1.09001 * 117.49395 * 359.97438 * 20 10 9 33 33 H 1.08000 * 119.97887 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2625 2.0719 1.1977 5 6 2.7240 3.3754 1.1988 6 17 3.0125 4.1936 2.7025 7 6 2.9551 4.0286 -0.0015 8 9 3.4055 5.3023 -0.0024 9 6 2.7182 3.3769 -1.1992 10 6 2.9625 4.0879 -2.5053 11 6 2.0634 5.2651 -2.7827 12 1 2.4457 6.1228 -3.3161 13 6 0.7526 5.2472 -2.3553 14 7 0.2870 4.2026 -1.7060 15 14 -0.3617 6.7065 -2.6984 16 1 0.3978 7.7461 -3.4385 17 1 -1.5200 6.2636 -3.5154 18 1 -0.8487 7.2703 -1.4138 19 6 3.4046 3.2398 -3.6996 20 6 4.4058 4.1678 -3.0071 21 6 2.2629 2.0716 -1.1974 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.0827 1.5621 2.1327 28 1 -0.6353 4.1898 -1.4057 29 1 3.5182 2.1675 -3.5407 30 1 3.0453 3.5335 -4.6858 31 1 4.7048 5.0714 -3.5380 32 1 5.1785 3.7063 -2.3922 33 1 2.0826 1.5617 -2.1322 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260804485.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:50 Heat of formation + Delta-G solvation = -27.764200 kcal Electronic energy + Delta-G solvation = -18669.542056 eV Core-core repulsion = 15635.331533 eV Total energy + Delta-G solvation = -3034.210523 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.49569 -40.38070 -38.09325 -37.31906 -34.36973 -34.15792 -31.25053 -29.72955 -27.67582 -24.69412 -24.38479 -23.00115 -22.08467 -20.75770 -18.73098 -18.06966 -17.30256 -16.72370 -16.41242 -16.25887 -15.65426 -15.15872 -14.86186 -14.64121 -14.29551 -13.85000 -13.81165 -13.56148 -13.12522 -12.96468 -12.90162 -12.58390 -12.34276 -12.14022 -12.03793 -11.94795 -11.83995 -11.65811 -11.35694 -11.03862 -10.74206 -10.27284 -9.43439 -9.11808 -8.00605 -6.18071 0.35191 0.55569 1.15222 1.35928 1.40761 1.48984 2.39737 2.79458 3.00184 3.54619 3.61973 3.92918 4.01194 4.32671 4.35962 4.42620 4.50485 4.63808 4.64423 4.78415 4.89110 4.90515 5.04916 5.13342 5.16914 5.22782 5.36212 5.41432 5.51351 5.52391 5.68915 5.70679 5.83895 6.15802 6.32550 6.77856 7.41648 8.90843 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.014365 B = 0.009185 C = 0.008193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.760462 B = 3047.720514 C = 3416.863609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.071 4.071 3 C -0.080 4.080 4 C -0.110 4.110 5 C -0.080 4.080 6 Cl -0.071 7.071 7 C 0.076 3.924 8 F -0.148 7.148 9 C 0.017 3.983 10 C 0.042 3.958 11 C -0.506 4.506 12 H 0.049 0.951 13 C 0.035 3.965 14 N -0.879 5.879 15 Si 0.942 3.058 16 H -0.273 1.273 17 H -0.275 1.275 18 H -0.287 1.287 19 C -0.185 4.185 20 C -0.190 4.190 21 C -0.070 4.070 22 H 0.048 0.952 23 H 0.037 0.963 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.155 0.845 28 H 0.260 0.740 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.255 -8.888 4.880 10.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 C -0.081 4.081 4 C -0.129 4.129 5 C -0.107 4.107 6 Cl -0.042 7.042 7 C 0.056 3.944 8 F -0.126 7.126 9 C 0.015 3.985 10 C 0.041 3.959 11 C -0.543 4.543 12 H 0.067 0.933 13 C -0.168 4.168 14 N -0.515 5.515 15 Si 0.768 3.232 16 H -0.197 1.197 17 H -0.201 1.201 18 H -0.214 1.214 19 C -0.223 4.223 20 C -0.227 4.227 21 C -0.089 4.089 22 H 0.067 0.933 23 H 0.056 0.944 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.111 0.889 27 H 0.172 0.828 28 H 0.069 0.931 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.112 -8.829 5.100 10.413 hybrid contribution -0.636 1.710 -0.180 1.833 sum 1.476 -7.120 4.920 8.779 Atomic orbital electron populations 1.21694 0.94683 1.02120 1.01366 1.20516 0.96116 0.90125 1.04086 1.20023 0.98704 0.97970 0.91380 1.20750 1.01151 0.91376 0.99595 1.20962 1.09114 0.95671 0.84995 1.98301 1.95015 1.79611 1.31286 1.17423 1.03785 0.79817 0.93344 1.91393 1.86815 1.37093 1.97346 1.19089 0.94039 0.93286 0.92071 1.17812 0.92891 0.96303 0.88846 1.20661 0.95090 1.01318 1.37236 0.93253 1.25497 0.98933 0.97901 0.94438 1.70029 1.15410 1.29015 1.37000 0.85743 0.79255 0.80502 0.77652 1.19720 1.20078 1.21365 1.23069 1.04702 0.96251 0.98230 1.22935 0.93148 1.01544 1.05113 1.20686 0.96958 0.93102 0.98106 0.93300 0.94387 0.90330 0.90026 0.88886 0.82751 0.93067 0.89156 0.90241 0.90160 0.89835 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.89 71.98 0.71 -2.75 16 2 C -0.07 -1.73 6.06 29.85 0.18 -1.55 16 3 C -0.08 -2.68 5.13 -19.87 -0.10 -2.78 16 4 C -0.11 -3.73 9.48 22.28 0.21 -3.52 16 5 C -0.08 -3.19 6.33 22.36 0.14 -3.05 16 6 Cl -0.07 -2.51 28.62 -2.72 -0.08 -2.59 16 7 C 0.08 3.55 7.15 22.39 0.16 3.71 16 8 F -0.15 -7.44 16.17 44.97 0.73 -6.72 16 9 C 0.02 0.78 3.04 -19.82 -0.06 0.72 16 10 C 0.04 2.02 1.72 -53.67 -0.09 1.93 16 11 C -0.51 -27.42 8.77 25.60 0.22 -27.20 16 12 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 13 C 0.03 1.87 5.37 84.66 0.45 2.32 16 14 N -0.88 -47.02 10.89 21.45 0.23 -46.79 16 15 Si 0.94 43.58 29.54 68.60 2.03 45.60 16 16 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 19 C -0.18 -7.70 9.43 30.62 0.29 -7.41 16 20 C -0.19 -8.03 9.94 30.62 0.30 -7.73 16 21 C -0.07 -2.81 8.23 22.27 0.18 -2.62 16 22 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 23 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 24 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.08 1.79 8.08 -2.38 -0.02 1.77 16 26 H 0.09 1.77 8.09 -2.38 -0.02 1.75 16 27 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 28 H 0.26 13.53 8.31 -92.71 -0.77 12.75 16 29 H 0.09 3.34 7.13 -2.39 -0.02 3.32 16 30 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 31 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 32 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 33 H 0.12 4.74 7.01 -2.91 -0.02 4.72 16 Total: -1.00 -58.35 300.42 6.63 -51.72 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 1.11 Total: 8.70 kcal Atomic # 6 Polarization: -52.54 SS G_CDS: 2.61 Total: -49.94 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.23 Total: -46.79 kcal Atomic # 9 Polarization: -7.44 SS G_CDS: 0.73 Total: -6.72 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 17 Polarization: -2.51 SS G_CDS: -0.08 Total: -2.59 kcal Total: -58.35 6.63 -51.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260804485.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.959 kcal (2) G-P(sol) polarization free energy of solvation -58.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds