Wall clock time and date at job start Mon Mar 30 2020 07:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38254 * 120.00110 * 2 1 4 4 C 1.38214 * 120.00091 * 179.97438 * 3 2 1 5 5 S 1.76198 * 119.99901 * 180.02562 * 4 3 2 6 6 C 1.81405 * 104.45050 * 89.99493 * 5 4 3 7 7 O 1.42099 * 104.27600 * 206.06292 * 5 4 3 8 8 O 1.42097 * 104.28086 * 333.92360 * 5 4 3 9 9 C 1.38250 * 119.99966 * 359.80581 * 4 3 2 10 10 C 1.38222 * 119.99951 * 0.42081 * 9 4 3 11 11 C 1.50698 * 119.99748 * 179.80940 * 10 9 4 12 12 C 1.50706 * 109.47294 * 264.72715 * 11 10 9 13 13 H 1.07999 * 119.99515 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00176 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00200 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00139 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47145 * 89.99836 * 16 14 12 18 18 H 1.48496 * 109.47547 * 210.00333 * 16 14 12 19 19 H 1.48499 * 109.47030 * 330.00237 * 16 14 12 20 20 C 1.38220 * 119.99834 * 179.97438 * 2 1 3 21 21 C 1.50701 * 120.00002 * 0.02562 * 20 2 1 22 22 H 1.09002 * 109.47108 * 270.02423 * 1 2 3 23 23 H 1.09001 * 109.47148 * 30.02566 * 1 2 3 24 24 H 1.09002 * 109.47206 * 150.02472 * 1 2 3 25 25 H 1.08004 * 120.00183 * 359.97438 * 3 2 1 26 26 H 1.09002 * 109.46652 * 60.00028 * 6 5 4 27 27 H 1.08996 * 109.46953 * 179.97438 * 6 5 4 28 28 H 1.09000 * 109.47095 * 299.99807 * 6 5 4 29 29 H 1.07997 * 120.00244 * 180.23846 * 9 4 3 30 30 H 1.09001 * 109.46665 * 144.73097 * 11 10 9 31 31 H 1.09000 * 109.47722 * 24.73428 * 11 10 9 32 32 H 0.96999 * 120.00061 * 179.97438 * 15 14 12 33 33 H 1.09003 * 109.46452 * 269.97740 * 21 20 2 34 34 H 1.08994 * 109.46957 * 29.97657 * 21 20 2 35 35 H 1.08997 * 109.46976 * 149.98198 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 16 4.4614 2.7232 0.0012 6 6 4.6869 3.1150 1.7581 7 8 5.7081 2.4083 -0.6034 8 8 3.5657 3.6454 -0.6042 9 6 4.2716 0.0000 0.0051 10 6 3.5805 -1.1970 0.0004 11 6 4.3341 -2.5021 0.0011 12 6 4.4777 -3.0000 -1.4141 13 1 4.0649 -2.4283 -2.2321 14 6 5.1359 -4.1853 -1.6644 15 7 5.2617 -4.6195 -2.8994 16 14 5.8505 -5.1737 -0.2495 17 1 4.8318 -6.1325 0.2486 18 1 7.0445 -5.9204 -0.7205 19 1 6.2431 -4.2540 0.8482 20 6 2.1980 -1.1970 0.0005 21 6 1.4445 -2.5021 0.0005 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6583 2.1327 -0.0004 26 1 5.2540 2.3174 2.2382 27 1 5.2301 4.0550 1.8538 28 1 3.7125 3.2075 2.2377 29 1 5.3516 0.0000 0.0094 30 1 3.7868 -3.2372 0.5911 31 1 5.3224 -2.3508 0.4351 32 1 5.7251 -5.4533 -3.0755 33 1 1.2628 -2.8167 1.0283 34 1 0.4921 -2.3718 -0.5133 35 1 2.0336 -3.2618 -0.5132 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260804487.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:43 Heat of formation + Delta-G solvation = -58.209392 kcal Electronic energy + Delta-G solvation = -18405.883982 eV Core-core repulsion = 15495.857268 eV Total energy + Delta-G solvation = -2910.026714 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.40661 -36.94739 -35.78992 -33.96441 -33.21819 -31.99653 -29.57637 -28.61711 -27.05456 -26.27550 -23.03570 -21.23779 -20.02044 -18.51666 -16.93423 -16.86201 -16.13853 -16.10100 -15.11135 -14.93268 -14.37878 -13.96423 -13.50353 -13.28349 -13.26231 -12.88554 -12.56733 -12.41920 -12.20809 -12.11316 -11.91474 -11.84577 -11.74695 -11.59180 -11.35201 -11.05212 -10.97141 -10.59648 -10.29053 -10.08660 -9.95085 -9.44108 -8.64419 -8.44188 -8.04124 -6.12851 -4.13126 0.18601 1.27188 1.78468 3.03072 3.22695 3.32006 3.33247 3.76481 4.16272 4.21176 4.35319 4.69614 4.86933 5.07722 5.18195 5.21602 5.36602 5.46883 5.52573 5.60918 5.68845 5.81187 5.97947 6.04854 6.12237 6.23103 6.45686 6.48956 6.57319 6.76440 6.89957 6.93446 7.34866 7.38637 7.61429 8.42701 8.92535 9.46286 10.99862 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.019638 B = 0.006396 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.477657 B = 4376.931063 C = 5235.537953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.114 4.114 3 C -0.047 4.047 4 C -0.661 4.661 5 S 2.501 3.499 6 C -0.653 4.653 7 O -0.937 6.937 8 O -0.946 6.946 9 C -0.030 4.030 10 C -0.049 4.049 11 C 0.014 3.986 12 C -0.515 4.515 13 H 0.074 0.926 14 C 0.072 3.928 15 N -0.895 5.895 16 Si 0.876 3.124 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.265 1.265 20 C -0.027 4.027 21 C -0.130 4.130 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.131 0.869 26 H 0.131 0.869 27 H 0.126 0.874 28 H 0.129 0.871 29 H 0.137 0.863 30 H 0.028 0.972 31 H 0.029 0.971 32 H 0.265 0.735 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.242 11.612 11.734 17.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.115 4.115 3 C -0.066 4.066 4 C -0.749 4.749 5 S 2.681 3.319 6 C -0.802 4.802 7 O -0.934 6.934 8 O -0.944 6.944 9 C -0.049 4.049 10 C -0.050 4.050 11 C -0.023 4.023 12 C -0.553 4.553 13 H 0.093 0.907 14 C -0.130 4.130 15 N -0.533 5.533 16 Si 0.703 3.297 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.189 1.189 20 C -0.027 4.027 21 C -0.186 4.186 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.149 0.851 26 H 0.150 0.850 27 H 0.145 0.855 28 H 0.148 0.852 29 H 0.155 0.845 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.890 11.940 10.905 17.210 hybrid contribution 0.173 -1.150 1.187 1.662 sum -5.716 10.790 12.093 17.185 Atomic orbital electron populations 1.20815 0.91272 1.02913 1.01950 1.19787 0.95913 0.92739 1.03047 1.20509 0.91805 0.98052 0.96195 1.30135 1.05674 1.18337 1.20761 1.04984 0.74727 0.74739 0.77402 1.30250 1.11836 1.11941 1.26157 1.93595 1.43138 1.83769 1.72937 1.93547 1.65128 1.62483 1.73192 1.20812 1.00043 0.90520 0.93573 1.20281 0.93042 0.96549 0.95109 1.18850 0.94931 0.89553 0.98944 1.20869 1.36957 1.06801 0.90693 0.90739 1.24984 0.95405 0.97185 0.95464 1.69894 1.42535 1.21946 1.18970 0.86842 0.79229 0.80548 0.83129 1.20132 1.21133 1.18919 1.19972 0.93629 0.94850 0.94279 1.21067 1.00085 0.95490 1.01999 0.91534 0.91777 0.90982 0.85134 0.85000 0.85497 0.85241 0.84538 0.95345 0.95248 0.92491 0.91481 0.91641 0.88412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.60 36.00 0.35 -1.01 16 2 C -0.11 -1.80 5.88 -104.62 -0.62 -2.42 16 3 C -0.05 -0.71 9.13 -39.58 -0.36 -1.08 16 4 C -0.66 -10.60 5.66 -39.59 -0.22 -10.82 16 5 S 2.50 33.22 5.80 -107.50 -0.62 32.60 16 6 C -0.65 -5.21 10.80 101.05 1.09 -4.12 16 7 O -0.94 -16.05 17.13 -57.54 -0.99 -17.04 16 8 O -0.95 -14.75 17.13 -57.54 -0.99 -15.73 16 9 C -0.03 -0.57 9.10 -39.58 -0.36 -0.93 16 10 C -0.05 -1.00 5.07 -104.62 -0.53 -1.53 16 11 C 0.01 0.33 3.49 -29.03 -0.10 0.23 16 12 C -0.52 -14.20 8.87 -34.44 -0.31 -14.51 16 13 H 0.07 2.29 7.98 -52.49 -0.42 1.87 16 14 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 15 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 16 Si 0.88 20.76 27.47 -169.99 -4.67 16.09 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 20 C -0.03 -0.49 5.88 -104.62 -0.62 -1.11 16 21 C -0.13 -2.15 8.81 36.01 0.32 -1.83 16 22 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 24 H 0.07 0.84 5.95 -51.93 -0.31 0.53 16 25 H 0.13 1.67 7.57 -52.48 -0.40 1.27 16 26 H 0.13 0.93 8.14 -51.92 -0.42 0.51 16 27 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.13 0.81 8.14 -51.92 -0.42 0.39 16 29 H 0.14 2.48 7.58 -52.49 -0.40 2.08 16 30 H 0.03 0.62 6.42 -51.93 -0.33 0.29 16 31 H 0.03 0.67 7.11 -51.93 -0.37 0.30 16 32 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.93 5.95 -51.93 -0.31 0.62 16 35 H 0.10 1.90 6.16 -51.93 -0.32 1.58 16 LS Contribution 301.82 15.07 4.55 4.55 Total: -1.00 -35.00 301.82 -7.95 -42.95 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -4.55 Total: 0.01 kcal Atomic # 6 Polarization: -35.75 SS G_CDS: -1.46 Total: -37.21 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.77 Total: -26.22 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -1.97 Total: -32.77 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Atomic # 16 Polarization: 33.22 SS G_CDS: -0.62 Total: 32.60 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -35.00 -7.95 -42.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260804487.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.261 kcal (2) G-P(sol) polarization free energy of solvation -34.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds