Wall clock time and date at job start Mon Mar 30 2020 07:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38254 * 120.00110 * 2 1 4 4 C 1.38214 * 120.00091 * 179.97438 * 3 2 1 5 5 S 1.76198 * 119.99901 * 180.02562 * 4 3 2 6 6 C 1.81405 * 104.45050 * 89.99493 * 5 4 3 7 7 O 1.42099 * 104.27600 * 206.06292 * 5 4 3 8 8 O 1.42097 * 104.28086 * 333.92360 * 5 4 3 9 9 C 1.38250 * 119.99966 * 359.80581 * 4 3 2 10 10 C 1.38222 * 119.99951 * 0.42081 * 9 4 3 11 11 C 1.50698 * 119.99748 * 179.80940 * 10 9 4 12 12 C 1.50706 * 109.47294 * 264.72715 * 11 10 9 13 13 H 1.07999 * 119.99515 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00176 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00200 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00139 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47145 * 89.99836 * 16 14 12 18 18 H 1.48496 * 109.47547 * 210.00333 * 16 14 12 19 19 H 1.48499 * 109.47030 * 330.00237 * 16 14 12 20 20 C 1.38220 * 119.99834 * 179.97438 * 2 1 3 21 21 C 1.50701 * 120.00002 * 0.02562 * 20 2 1 22 22 H 1.09002 * 109.47108 * 270.02423 * 1 2 3 23 23 H 1.09001 * 109.47148 * 30.02566 * 1 2 3 24 24 H 1.09002 * 109.47206 * 150.02472 * 1 2 3 25 25 H 1.08004 * 120.00183 * 359.97438 * 3 2 1 26 26 H 1.09002 * 109.46652 * 60.00028 * 6 5 4 27 27 H 1.08996 * 109.46953 * 179.97438 * 6 5 4 28 28 H 1.09000 * 109.47095 * 299.99807 * 6 5 4 29 29 H 1.07997 * 120.00244 * 180.23846 * 9 4 3 30 30 H 1.09001 * 109.46665 * 144.73097 * 11 10 9 31 31 H 1.09000 * 109.47722 * 24.73428 * 11 10 9 32 32 H 0.96999 * 120.00061 * 179.97438 * 15 14 12 33 33 H 1.09003 * 109.46452 * 269.97740 * 21 20 2 34 34 H 1.08994 * 109.46957 * 29.97657 * 21 20 2 35 35 H 1.08997 * 109.46976 * 149.98198 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 16 4.4614 2.7232 0.0012 6 6 4.6869 3.1150 1.7581 7 8 5.7081 2.4083 -0.6034 8 8 3.5657 3.6454 -0.6042 9 6 4.2716 0.0000 0.0051 10 6 3.5805 -1.1970 0.0004 11 6 4.3341 -2.5021 0.0011 12 6 4.4777 -3.0000 -1.4141 13 1 4.0649 -2.4283 -2.2321 14 6 5.1359 -4.1853 -1.6644 15 7 5.2617 -4.6195 -2.8994 16 14 5.8505 -5.1737 -0.2495 17 1 4.8318 -6.1325 0.2486 18 1 7.0445 -5.9204 -0.7205 19 1 6.2431 -4.2540 0.8482 20 6 2.1980 -1.1970 0.0005 21 6 1.4445 -2.5021 0.0005 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6583 2.1327 -0.0004 26 1 5.2540 2.3174 2.2382 27 1 5.2301 4.0550 1.8538 28 1 3.7125 3.2075 2.2377 29 1 5.3516 0.0000 0.0094 30 1 3.7868 -3.2372 0.5911 31 1 5.3224 -2.3508 0.4351 32 1 5.7251 -5.4533 -3.0755 33 1 1.2628 -2.8167 1.0283 34 1 0.4921 -2.3718 -0.5133 35 1 2.0336 -3.2618 -0.5132 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260804487.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:43 Heat of formation + Delta-G solvation = -83.408611 kcal Electronic energy + Delta-G solvation = -18406.976702 eV Core-core repulsion = 15495.857268 eV Total energy + Delta-G solvation = -2911.119434 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.73097 -38.10759 -36.95211 -35.71883 -34.46208 -33.85099 -30.30233 -30.23211 -28.45365 -27.46590 -24.88455 -22.50185 -21.48270 -19.63604 -19.01099 -18.15677 -17.37967 -17.13926 -16.38267 -16.26383 -16.17567 -15.25783 -14.97773 -14.40195 -14.00493 -13.98444 -13.93252 -13.83906 -13.53513 -13.49505 -13.24300 -13.11058 -12.98219 -12.94174 -12.72683 -12.63860 -12.21873 -11.99412 -11.91173 -11.74483 -11.53725 -11.29233 -10.80232 -9.71720 -9.48107 -8.31441 -6.37114 -0.80000 -0.03689 0.43656 1.33984 1.37241 1.48358 1.95696 2.33309 2.51190 3.02598 3.09567 3.23551 3.83960 3.94320 4.05538 4.13631 4.19067 4.32262 4.38406 4.54965 4.71577 4.74688 4.83143 4.90382 4.95778 4.96351 5.05501 5.08435 5.20531 5.23958 5.43941 5.52125 5.54910 5.83649 6.04394 6.24785 6.68657 7.26059 8.85378 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.019638 B = 0.006396 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.477657 B = 4376.931063 C = 5235.537953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.114 4.114 3 C -0.047 4.047 4 C -0.663 4.663 5 S 2.503 3.497 6 C -0.616 4.616 7 O -0.987 6.987 8 O -0.973 6.973 9 C -0.053 4.053 10 C -0.086 4.086 11 C 0.022 3.978 12 C -0.517 4.517 13 H 0.021 0.979 14 C 0.009 3.991 15 N -0.949 5.949 16 Si 0.949 3.051 17 H -0.259 1.259 18 H -0.285 1.285 19 H -0.245 1.245 20 C -0.047 4.047 21 C -0.126 4.126 22 H 0.092 0.908 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.161 0.839 26 H 0.148 0.852 27 H 0.159 0.841 28 H 0.160 0.840 29 H 0.129 0.871 30 H 0.041 0.959 31 H 0.029 0.971 32 H 0.268 0.732 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.431 13.119 15.156 21.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.115 4.115 3 C -0.066 4.066 4 C -0.748 4.748 5 S 2.687 3.313 6 C -0.771 4.771 7 O -0.984 6.984 8 O -0.970 6.970 9 C -0.072 4.072 10 C -0.087 4.087 11 C -0.015 4.015 12 C -0.555 4.555 13 H 0.040 0.960 14 C -0.189 4.189 15 N -0.589 5.589 16 Si 0.771 3.229 17 H -0.184 1.184 18 H -0.211 1.211 19 H -0.168 1.168 20 C -0.047 4.047 21 C -0.182 4.182 22 H 0.111 0.889 23 H 0.099 0.901 24 H 0.092 0.908 25 H 0.179 0.821 26 H 0.167 0.833 27 H 0.177 0.823 28 H 0.178 0.822 29 H 0.147 0.853 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.116 13.421 14.286 20.853 hybrid contribution 0.480 -1.438 0.113 1.520 sum -6.636 11.984 14.399 19.874 Atomic orbital electron populations 1.20916 0.88217 1.03817 1.03881 1.20241 0.98129 0.91863 1.01259 1.20992 0.91705 0.99240 0.94665 1.30552 1.06450 1.18672 1.19168 1.04912 0.73022 0.73124 0.80248 1.29975 1.14536 1.13962 1.18610 1.93536 1.44501 1.84053 1.76350 1.93506 1.65477 1.62011 1.76056 1.20822 0.99948 0.91330 0.95133 1.20221 0.94350 0.95847 0.98266 1.18672 0.95593 0.91481 0.95782 1.21053 1.36087 1.06348 0.91978 0.96026 1.25987 0.95855 0.98506 0.98502 1.70066 1.44217 1.22860 1.21766 0.85678 0.78496 0.79052 0.79628 1.18395 1.21074 1.16794 1.20213 0.93004 0.96587 0.94879 1.21035 1.00113 0.93769 1.03291 0.88910 0.90149 0.90832 0.82104 0.83314 0.82319 0.82186 0.85346 0.94091 0.95227 0.92352 0.89025 0.89509 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.32 9.60 71.23 0.68 -1.64 16 2 C -0.11 -3.40 5.88 -19.87 -0.12 -3.52 16 3 C -0.05 -1.36 9.13 22.27 0.20 -1.16 16 4 C -0.66 -20.80 5.66 22.27 0.13 -20.67 16 5 S 2.50 63.00 5.80 -56.49 -0.33 62.67 16 6 C -0.62 -6.90 10.80 113.37 1.22 -5.68 16 7 O -0.99 -34.29 17.13 -127.65 -2.19 -36.48 16 8 O -0.97 -28.83 17.13 -127.65 -2.19 -31.02 16 9 C -0.05 -2.06 9.10 22.27 0.20 -1.86 16 10 C -0.09 -3.61 5.07 -19.87 -0.10 -3.71 16 11 C 0.02 1.03 3.49 29.10 0.10 1.13 16 12 C -0.52 -30.11 8.87 25.60 0.23 -29.88 16 13 H 0.02 1.43 7.98 -2.91 -0.02 1.41 16 14 C 0.01 0.50 5.47 84.65 0.46 0.97 16 15 N -0.95 -59.99 13.96 21.44 0.30 -59.69 16 16 Si 0.95 43.43 27.47 68.60 1.88 45.32 16 17 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.24 -10.31 6.54 99.48 0.65 -9.66 16 20 C -0.05 -1.69 5.88 -19.87 -0.12 -1.81 16 21 C -0.13 -4.11 8.81 71.24 0.63 -3.48 16 22 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 24 H 0.07 1.51 5.95 -2.39 -0.01 1.50 16 25 H 0.16 3.56 7.57 -2.91 -0.02 3.54 16 26 H 0.15 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.16 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.16 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.13 4.94 7.58 -2.91 -0.02 4.91 16 30 H 0.04 1.80 6.42 -2.39 -0.02 1.78 16 31 H 0.03 1.36 7.11 -2.39 -0.02 1.35 16 32 H 0.27 15.72 8.31 -92.71 -0.77 14.94 16 33 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.09 2.38 5.95 -2.39 -0.01 2.36 16 35 H 0.06 2.38 6.16 -2.39 -0.01 2.36 16 Total: -1.00 -82.08 301.82 2.04 -80.03 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 1.03 Total: 10.47 kcal Atomic # 6 Polarization: -74.83 SS G_CDS: 3.53 Total: -71.31 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: 0.30 Total: -59.69 kcal Atomic # 8 Polarization: -63.12 SS G_CDS: -4.37 Total: -67.50 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.88 Total: 45.32 kcal Atomic # 16 Polarization: 63.00 SS G_CDS: -0.33 Total: 62.67 kcal Total: -82.08 2.04 -80.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260804487.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.376 kcal (2) G-P(sol) polarization free energy of solvation -82.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds