Wall clock time and date at job start Mon Mar 30 2020 07:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38208 * 119.99598 * 2 1 4 4 C 1.38434 * 119.99295 * 179.97438 * 3 2 1 5 5 F 1.35093 * 120.01582 * 180.02562 * 4 3 2 6 6 C 1.38481 * 119.97006 * 0.02562 * 4 3 2 7 7 C 1.50697 * 120.00182 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.47374 * 359.97438 * 7 6 4 9 9 C 1.50706 * 109.47178 * 119.99930 * 7 6 4 10 10 H 1.07998 * 119.99629 * 359.97438 * 9 7 6 11 11 C 1.37875 * 119.99955 * 180.02562 * 9 7 6 12 12 N 1.31515 * 119.99932 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 119.99908 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47233 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47364 * 119.99503 * 13 11 9 16 16 H 1.48500 * 109.46997 * 239.99827 * 13 11 9 17 17 C 1.53002 * 109.46783 * 239.99515 * 7 6 4 18 18 C 1.53001 * 117.49694 * 128.75221 * 17 7 6 19 19 C 1.52996 * 117.49903 * 60.09074 * 17 7 6 20 20 C 1.38167 * 119.98805 * 0.26919 * 6 4 3 21 21 C 1.38329 * 119.99386 * 180.02562 * 2 1 3 22 22 Cl 1.73600 * 119.98940 * 0.02562 * 21 2 1 23 23 H 1.08999 * 109.46696 * 90.00276 * 1 2 3 24 24 H 1.09001 * 109.46949 * 210.00311 * 1 2 3 25 25 H 1.09001 * 109.47246 * 330.00506 * 1 2 3 26 26 H 1.08007 * 120.00223 * 0.02562 * 3 2 1 27 27 H 0.97003 * 119.99476 * 180.02562 * 12 11 9 28 28 H 1.09001 * 115.55063 * 274.41729 * 17 7 6 29 29 H 1.08997 * 117.50137 * 359.97438 * 18 17 7 30 30 H 1.09006 * 117.50251 * 145.02076 * 18 17 7 31 31 H 1.09005 * 117.49800 * 214.97730 * 19 17 7 32 32 H 1.08995 * 117.49944 * 0.02562 * 19 17 7 33 33 H 1.08004 * 119.99150 * 179.70831 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1970 0.0000 4 6 3.5823 1.1969 0.0005 5 9 4.2582 2.3666 0.0011 6 6 4.2741 -0.0028 0.0005 7 6 5.7810 -0.0037 0.0017 8 1 6.1450 1.0237 0.0020 9 6 6.2820 -0.7150 1.2323 10 1 5.5794 -1.1249 1.9426 11 6 7.6373 -0.8414 1.4517 12 7 8.4929 -0.3417 0.5869 13 14 8.2582 -1.7224 2.9774 14 1 7.1024 -2.1883 3.7849 15 1 9.0832 -2.8894 2.5739 16 1 9.0828 -0.7894 3.7866 17 6 6.2915 -0.7248 -1.2474 18 6 7.3290 0.0000 -2.1072 19 6 5.8903 -0.1511 -2.6079 20 6 3.5823 -1.1988 -0.0056 21 6 2.1986 -1.1980 -0.0005 22 17 1.3301 -2.7012 -0.0019 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.6579 2.1323 0.0004 27 1 9.4464 -0.4310 0.7411 28 1 6.3760 -1.8083 -1.1633 29 1 7.6476 0.9907 -1.7832 30 1 8.0958 -0.6066 -2.5890 31 1 5.7113 -0.8572 -3.4188 32 1 5.2631 0.7403 -2.6130 33 1 4.1217 -2.1345 -0.0104 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260814110.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:39 Heat of formation + Delta-G solvation = -30.778231 kcal Electronic energy + Delta-G solvation = -18275.027339 eV Core-core repulsion = 15240.686118 eV Total energy + Delta-G solvation = -3034.341221 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.82501 -40.47067 -38.35722 -37.25066 -34.84877 -33.89177 -31.24177 -30.48056 -27.26831 -24.91258 -23.90347 -22.96777 -22.35603 -20.83576 -18.61438 -17.96664 -17.52194 -17.18287 -16.58711 -16.43369 -15.78565 -15.08862 -14.84264 -14.76073 -14.57194 -14.35578 -13.89240 -13.29471 -13.16163 -12.95344 -12.88589 -12.71582 -12.45003 -12.26484 -12.15422 -11.95674 -11.83352 -11.62896 -11.46630 -10.69297 -10.60352 -10.26382 -9.71991 -9.25877 -8.07188 -6.21272 0.07825 0.29012 1.16505 1.39685 1.43139 1.52978 2.41114 2.57231 3.18891 3.30275 3.35785 3.78394 3.87153 4.12146 4.24703 4.31684 4.44763 4.58757 4.65652 4.72084 4.86302 4.86613 4.90013 5.03106 5.19432 5.24199 5.30911 5.38084 5.39205 5.46038 5.59688 5.73049 5.87796 5.94308 6.28589 6.85201 7.45424 8.97188 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.017778 B = 0.007110 C = 0.006327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.602179 B = 3937.167241 C = 4424.752505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.066 4.066 3 C -0.137 4.137 4 C 0.071 3.929 5 F -0.150 7.150 6 C -0.078 4.078 7 C 0.110 3.890 8 H 0.007 0.993 9 C -0.531 4.531 10 H 0.051 0.949 11 C 0.025 3.975 12 N -0.894 5.894 13 Si 0.947 3.053 14 H -0.270 1.270 15 H -0.279 1.279 16 H -0.284 1.284 17 C -0.098 4.098 18 C -0.140 4.140 19 C -0.192 4.192 20 C -0.076 4.076 21 C -0.050 4.050 22 Cl -0.059 7.059 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.167 0.833 27 H 0.259 0.741 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.291 -0.509 -3.270 14.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.067 4.067 3 C -0.156 4.156 4 C 0.052 3.948 5 F -0.129 7.129 6 C -0.080 4.080 7 C 0.092 3.908 8 H 0.025 0.975 9 C -0.569 4.569 10 H 0.070 0.930 11 C -0.176 4.176 12 N -0.531 5.531 13 Si 0.773 3.227 14 H -0.195 1.195 15 H -0.205 1.205 16 H -0.210 1.210 17 C -0.117 4.117 18 C -0.178 4.178 19 C -0.229 4.229 20 C -0.094 4.094 21 C -0.077 4.077 22 Cl -0.030 7.030 23 H 0.108 0.892 24 H 0.095 0.905 25 H 0.108 0.892 26 H 0.184 0.816 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.095 0.905 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.154 -0.578 -3.306 14.546 hybrid contribution 1.293 -0.281 0.865 1.581 sum -12.860 -0.858 -2.440 13.118 Atomic orbital electron populations 1.20900 0.87167 1.04488 1.04094 1.19772 0.98368 0.89525 0.99035 1.21091 0.90585 1.00076 1.03802 1.17985 0.90931 0.80795 1.05070 1.91423 1.81018 1.46291 1.94136 1.20331 0.98072 0.91533 0.98029 1.17230 0.85262 0.95177 0.93162 0.97541 1.21253 0.91834 1.37335 1.06486 0.93049 1.25615 0.97152 0.96087 0.98747 1.70148 1.01922 1.45018 1.36038 0.85675 0.78282 0.78447 0.80270 1.19465 1.20501 1.20974 1.21974 1.02376 0.97235 0.90071 1.22360 0.91141 1.00938 1.03328 1.23054 0.98327 1.02935 0.98576 1.20691 0.91824 0.98173 0.98757 1.20876 0.91704 0.87630 1.07442 1.98323 1.76115 1.31625 1.96954 0.89165 0.90524 0.89170 0.81571 0.93136 0.90937 0.91667 0.90297 0.88169 0.90524 0.85224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.99 9.61 71.24 0.68 -1.30 16 2 C -0.07 -1.78 5.88 -19.85 -0.12 -1.89 16 3 C -0.14 -4.00 9.68 22.31 0.22 -3.79 16 4 C 0.07 2.74 7.25 22.37 0.16 2.90 16 5 F -0.15 -6.23 16.19 44.97 0.73 -5.50 16 6 C -0.08 -3.33 4.39 -19.82 -0.09 -3.41 16 7 C 0.11 5.49 2.08 -12.28 -0.03 5.46 16 8 H 0.01 0.37 6.88 -2.39 -0.02 0.35 16 9 C -0.53 -28.77 8.23 25.60 0.21 -28.56 16 10 H 0.05 2.79 7.61 -2.91 -0.02 2.77 16 11 C 0.03 1.37 5.30 84.65 0.45 1.82 16 12 N -0.89 -49.99 11.43 21.45 0.25 -49.74 16 13 Si 0.95 43.27 29.54 68.60 2.03 45.30 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 17 C -0.10 -4.53 3.86 -10.79 -0.04 -4.57 16 18 C -0.14 -6.24 9.04 30.62 0.28 -5.96 16 19 C -0.19 -7.49 9.87 30.62 0.30 -7.19 16 20 C -0.08 -2.86 8.61 22.29 0.19 -2.67 16 21 C -0.05 -1.54 6.31 22.32 0.14 -1.40 16 22 Cl -0.06 -1.55 27.29 -2.72 -0.07 -1.63 16 23 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.08 1.35 6.90 -2.39 -0.02 1.34 16 25 H 0.09 1.27 8.09 -2.39 -0.02 1.25 16 26 H 0.17 3.70 8.06 -2.91 -0.02 3.67 16 27 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 28 H 0.07 3.50 8.11 -2.39 -0.02 3.48 16 29 H 0.06 3.15 8.05 -2.39 -0.02 3.13 16 30 H 0.08 3.33 8.14 -2.38 -0.02 3.31 16 31 H 0.10 3.38 8.14 -2.38 -0.02 3.36 16 32 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 33 H 0.13 5.09 8.05 -2.91 -0.02 5.07 16 Total: -1.00 -58.70 298.52 6.40 -52.30 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 1.11 Total: 9.83 kcal Atomic # 6 Polarization: -52.92 SS G_CDS: 2.36 Total: -50.56 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.25 Total: -49.74 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.73 Total: -5.50 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.07 Total: -1.63 kcal Total: -58.70 6.40 -52.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260814110.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.523 kcal (2) G-P(sol) polarization free energy of solvation -58.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds