Wall clock time and date at job start Mon Mar 30 2020 07:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38207 * 119.98957 * 2 1 4 4 C 1.38439 * 119.98858 * 179.74482 * 3 2 1 5 5 F 1.35095 * 120.01462 * 180.27565 * 4 3 2 6 6 C 1.38483 * 119.96912 * 0.52299 * 4 3 2 7 7 C 1.50702 * 120.00344 * 179.76934 * 6 4 3 8 8 H 1.09003 * 109.46789 * 359.72748 * 7 6 4 9 9 C 1.50699 * 109.47209 * 239.72679 * 7 6 4 10 10 H 1.07997 * 119.99844 * 275.66015 * 9 7 6 11 11 C 1.37871 * 119.99735 * 95.66461 * 9 7 6 12 12 N 1.31515 * 120.00399 * 6.09209 * 11 9 7 13 13 Si 1.86807 * 119.99844 * 186.08981 * 11 9 7 14 14 H 1.48498 * 109.46911 * 90.00300 * 13 11 9 15 15 H 1.48501 * 109.47306 * 210.00053 * 13 11 9 16 16 H 1.48495 * 109.47212 * 330.00227 * 13 11 9 17 17 C 1.53001 * 109.46850 * 119.72339 * 7 6 4 18 18 C 1.53000 * 117.49715 * 185.40655 * 17 7 6 19 19 C 1.53002 * 60.02950 * 107.48086 * 18 17 7 20 20 C 1.38163 * 119.98758 * 359.49627 * 6 4 3 21 21 C 1.38325 * 119.99856 * 180.02562 * 2 1 3 22 22 Cl 1.73605 * 119.98398 * 0.02562 * 21 2 1 23 23 H 1.08998 * 109.47581 * 269.98030 * 1 2 3 24 24 H 1.08998 * 109.47461 * 29.98331 * 1 2 3 25 25 H 1.09010 * 109.46453 * 149.98132 * 1 2 3 26 26 H 1.07998 * 120.00975 * 359.97438 * 3 2 1 27 27 H 0.97003 * 120.00204 * 180.02562 * 12 11 9 28 28 H 1.09000 * 115.54762 * 39.74606 * 17 7 6 29 29 H 1.08996 * 117.50240 * 214.97985 * 18 17 7 30 30 H 1.08998 * 117.49826 * 359.97438 * 18 17 7 31 31 H 1.09004 * 117.49714 * 107.50271 * 19 18 17 32 32 H 1.09001 * 117.50009 * 252.51806 * 19 18 17 33 33 H 1.08003 * 119.99094 * 180.25319 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1970 0.0000 4 6 3.5822 1.1970 0.0053 5 9 4.2580 2.3668 0.0110 6 6 4.2740 -0.0026 -0.0003 7 6 5.7810 -0.0035 0.0003 8 1 6.1449 1.0240 0.0006 9 6 6.2834 -0.7141 -1.2301 10 1 6.3758 -1.7901 -1.2323 11 6 6.6251 0.0096 -2.3527 12 7 6.6277 1.3241 -2.3123 13 14 7.0847 -0.8771 -3.9314 14 1 5.8645 -1.0972 -4.7487 15 1 8.0523 -0.0524 -4.6988 16 1 7.7025 -2.1866 -3.6018 17 6 6.2901 -0.7252 1.2497 18 6 7.7993 -0.7232 1.5010 19 6 6.8783 0.1340 2.3716 20 6 3.5823 -1.1986 -0.0007 21 6 2.1986 -1.1979 -0.0005 22 17 1.3301 -2.7011 -0.0019 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3634 0.8901 -0.5136 25 1 -0.3632 -0.8899 -0.5142 26 1 1.6578 2.1323 -0.0004 27 1 6.8677 1.8332 -3.1023 28 1 5.7332 -1.6170 1.5371 29 1 8.2353 -1.6134 1.9542 30 1 8.4295 -0.2082 0.7760 31 1 6.7084 -0.1924 3.3977 32 1 6.9025 1.2130 2.2193 33 1 4.1218 -2.1343 -0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260814111.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:43 Heat of formation + Delta-G solvation = -22.158633 kcal Electronic energy + Delta-G solvation = -18279.959879 eV Core-core repulsion = 15245.992432 eV Total energy + Delta-G solvation = -3033.967447 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -47.98418 -38.88977 -36.81457 -35.90311 -33.35156 -32.11646 -29.71137 -28.83142 -25.65338 -23.34966 -22.41068 -21.51274 -20.79903 -19.13811 -16.66832 -16.38875 -15.93192 -15.59250 -14.86297 -14.65088 -14.23623 -13.60543 -13.52505 -13.20562 -13.07055 -12.49905 -12.32415 -12.05749 -11.64336 -11.46244 -11.36256 -11.00649 -10.82118 -10.78276 -10.73394 -10.49360 -10.24815 -9.96591 -9.47607 -9.26348 -8.81864 -8.54586 -8.19487 -7.64759 -6.12082 -4.16400 1.66002 1.81215 2.55319 3.26378 3.33663 3.35895 4.10230 4.35193 4.75632 4.89555 5.16169 5.19723 5.28247 5.57065 5.67009 5.76539 5.81676 5.87558 5.91976 6.00999 6.12793 6.30280 6.35235 6.43462 6.50565 6.74757 6.77215 6.83110 6.94971 6.99108 7.21921 7.53409 7.70614 7.81817 8.21768 8.90776 9.46651 10.94852 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.015203 B = 0.007712 C = 0.007054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.247085 B = 3629.718128 C = 3968.459880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.085 4.085 3 C -0.153 4.153 4 C 0.103 3.897 5 F -0.130 7.130 6 C -0.045 4.045 7 C 0.088 3.912 8 H 0.081 0.919 9 C -0.504 4.504 10 H 0.060 0.940 11 C 0.068 3.932 12 N -0.879 5.879 13 Si 0.890 3.110 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.272 1.272 17 C -0.121 4.121 18 C -0.167 4.167 19 C -0.201 4.201 20 C -0.076 4.076 21 C -0.050 4.050 22 Cl -0.088 7.088 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.130 0.870 27 H 0.264 0.736 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.102 -2.528 5.714 10.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.086 4.086 3 C -0.172 4.172 4 C 0.084 3.916 5 F -0.108 7.108 6 C -0.047 4.047 7 C 0.070 3.930 8 H 0.099 0.901 9 C -0.541 4.541 10 H 0.078 0.922 11 C -0.136 4.136 12 N -0.515 5.515 13 Si 0.717 3.283 14 H -0.205 1.205 15 H -0.212 1.212 16 H -0.196 1.196 17 C -0.139 4.139 18 C -0.204 4.204 19 C -0.238 4.238 20 C -0.095 4.095 21 C -0.076 4.076 22 Cl -0.059 7.059 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.148 0.852 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.101 -2.440 5.594 10.143 hybrid contribution 0.264 -0.333 -1.056 1.139 sum -7.837 -2.773 4.537 9.471 Atomic orbital electron populations 1.20745 0.90722 1.02881 1.02223 1.19217 0.96016 0.90707 1.02642 1.20773 0.92455 0.98018 1.05919 1.17659 0.89241 0.82057 1.02663 1.91487 1.80322 1.45430 1.93568 1.20850 1.00208 0.89753 0.93896 1.17704 0.84432 0.99652 0.91226 0.90080 1.20863 1.43470 0.93375 0.96438 0.92165 1.25014 0.94696 0.94856 0.99001 1.69933 1.47128 1.05011 1.29430 0.86618 0.78369 0.79822 0.83456 1.20520 1.21178 1.19647 1.22454 0.95278 0.99669 0.96527 1.22698 0.94277 1.01000 1.02405 1.23008 1.07341 0.98176 0.95260 1.20713 0.90561 0.99138 0.99066 1.20733 0.92332 0.85653 1.08928 1.98302 1.77124 1.33251 1.97209 0.91309 0.91634 0.91160 0.85200 0.92637 0.89767 0.90481 0.88561 0.90471 0.89451 0.84690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.61 36.01 0.35 -1.03 16 2 C -0.08 -1.40 5.88 -104.60 -0.62 -2.01 16 3 C -0.15 -2.71 9.68 -39.52 -0.38 -3.09 16 4 C 0.10 2.19 7.25 -39.42 -0.29 1.91 16 5 F -0.13 -2.96 16.19 2.25 0.04 -2.92 16 6 C -0.05 -0.99 4.78 -104.56 -0.50 -1.49 16 7 C 0.09 2.08 2.22 -92.92 -0.21 1.88 16 8 H 0.08 2.16 6.00 -51.93 -0.31 1.85 16 9 C -0.50 -12.98 7.71 -34.44 -0.27 -13.25 16 10 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 11 C 0.07 1.82 5.45 -17.82 -0.10 1.72 16 12 N -0.88 -24.60 12.76 55.43 0.71 -23.89 16 13 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 17 C -0.12 -2.46 4.93 -90.58 -0.45 -2.91 16 18 C -0.17 -3.17 10.01 -26.73 -0.27 -3.44 16 19 C -0.20 -3.66 10.18 -26.69 -0.27 -3.93 16 20 C -0.08 -1.50 8.45 -39.56 -0.33 -1.83 16 21 C -0.05 -0.88 6.31 -39.50 -0.25 -1.13 16 22 Cl -0.09 -1.32 27.29 -51.86 -1.42 -2.74 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 25 H 0.07 0.86 6.90 -51.92 -0.36 0.51 16 26 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.08 1.61 7.42 -51.93 -0.39 1.23 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.10 2.00 8.14 -51.93 -0.42 1.58 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.09 1.65 8.08 -51.93 -0.42 1.23 16 33 H 0.14 2.59 7.80 -52.48 -0.41 2.18 16 LS Contribution 300.62 15.07 4.53 4.53 Total: -1.00 -27.08 300.62 -8.70 -35.78 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -3.96 Total: 2.02 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: -3.58 Total: -28.60 kcal Atomic # 7 Polarization: -24.60 SS G_CDS: 0.71 Total: -23.89 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.04 Total: -2.92 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.42 Total: -2.74 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.08 -8.70 -35.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260814111.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.622 kcal (2) G-P(sol) polarization free energy of solvation -27.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds