Wall clock time and date at job start Mon Mar 30 2020 07:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38207 * 119.98957 * 2 1 4 4 C 1.38439 * 119.98858 * 179.74482 * 3 2 1 5 5 F 1.35095 * 120.01462 * 180.27565 * 4 3 2 6 6 C 1.38483 * 119.96912 * 0.52299 * 4 3 2 7 7 C 1.50702 * 120.00344 * 179.76934 * 6 4 3 8 8 H 1.09003 * 109.46789 * 359.72748 * 7 6 4 9 9 C 1.50699 * 109.47209 * 239.72679 * 7 6 4 10 10 H 1.07997 * 119.99844 * 275.66015 * 9 7 6 11 11 C 1.37871 * 119.99735 * 95.66461 * 9 7 6 12 12 N 1.31515 * 120.00399 * 6.09209 * 11 9 7 13 13 Si 1.86807 * 119.99844 * 186.08981 * 11 9 7 14 14 H 1.48498 * 109.46911 * 90.00300 * 13 11 9 15 15 H 1.48501 * 109.47306 * 210.00053 * 13 11 9 16 16 H 1.48495 * 109.47212 * 330.00227 * 13 11 9 17 17 C 1.53001 * 109.46850 * 119.72339 * 7 6 4 18 18 C 1.53000 * 117.49715 * 185.40655 * 17 7 6 19 19 C 1.53002 * 60.02950 * 107.48086 * 18 17 7 20 20 C 1.38163 * 119.98758 * 359.49627 * 6 4 3 21 21 C 1.38325 * 119.99856 * 180.02562 * 2 1 3 22 22 Cl 1.73605 * 119.98398 * 0.02562 * 21 2 1 23 23 H 1.08998 * 109.47581 * 269.98030 * 1 2 3 24 24 H 1.08998 * 109.47461 * 29.98331 * 1 2 3 25 25 H 1.09010 * 109.46453 * 149.98132 * 1 2 3 26 26 H 1.07998 * 120.00975 * 359.97438 * 3 2 1 27 27 H 0.97003 * 120.00204 * 180.02562 * 12 11 9 28 28 H 1.09000 * 115.54762 * 39.74606 * 17 7 6 29 29 H 1.08996 * 117.50240 * 214.97985 * 18 17 7 30 30 H 1.08998 * 117.49826 * 359.97438 * 18 17 7 31 31 H 1.09004 * 117.49714 * 107.50271 * 19 18 17 32 32 H 1.09001 * 117.50009 * 252.51806 * 19 18 17 33 33 H 1.08003 * 119.99094 * 180.25319 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1970 0.0000 4 6 3.5822 1.1970 0.0053 5 9 4.2580 2.3668 0.0110 6 6 4.2740 -0.0026 -0.0003 7 6 5.7810 -0.0035 0.0003 8 1 6.1449 1.0240 0.0006 9 6 6.2834 -0.7141 -1.2301 10 1 6.3758 -1.7901 -1.2323 11 6 6.6251 0.0096 -2.3527 12 7 6.6277 1.3241 -2.3123 13 14 7.0847 -0.8771 -3.9314 14 1 5.8645 -1.0972 -4.7487 15 1 8.0523 -0.0524 -4.6988 16 1 7.7025 -2.1866 -3.6018 17 6 6.2901 -0.7252 1.2497 18 6 7.7993 -0.7232 1.5010 19 6 6.8783 0.1340 2.3716 20 6 3.5823 -1.1986 -0.0007 21 6 2.1986 -1.1979 -0.0005 22 17 1.3301 -2.7011 -0.0019 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3634 0.8901 -0.5136 25 1 -0.3632 -0.8899 -0.5142 26 1 1.6578 2.1323 -0.0004 27 1 6.8677 1.8332 -3.1023 28 1 5.7332 -1.6170 1.5371 29 1 8.2353 -1.6134 1.9542 30 1 8.4295 -0.2082 0.7760 31 1 6.7084 -0.1924 3.3977 32 1 6.9025 1.2130 2.2193 33 1 4.1218 -2.1343 -0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260814111.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:43 Heat of formation + Delta-G solvation = -33.622715 kcal Electronic energy + Delta-G solvation = -18280.456999 eV Core-core repulsion = 15245.992432 eV Total energy + Delta-G solvation = -3034.464567 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.65913 -40.36845 -38.36283 -37.24224 -35.06725 -33.77098 -31.17137 -30.40970 -27.25603 -25.06911 -23.88908 -23.03158 -22.27933 -20.79837 -18.53554 -17.92996 -17.50137 -17.12492 -16.67228 -16.36910 -15.74703 -15.06190 -14.88259 -14.73201 -14.49615 -14.28561 -13.74445 -13.27793 -13.21316 -13.04408 -12.88215 -12.71946 -12.51625 -12.25711 -12.23015 -12.10812 -11.69097 -11.59466 -11.16490 -11.00468 -10.57243 -10.43306 -9.66609 -9.16537 -8.12602 -6.22135 0.16113 0.36233 1.18816 1.38981 1.40891 1.49575 2.39353 2.62236 3.13033 3.25354 3.47130 3.81991 3.92704 4.04527 4.27457 4.35134 4.39381 4.52547 4.67739 4.80035 4.82734 4.85211 4.87980 4.95380 5.19579 5.20790 5.30053 5.36475 5.40926 5.44573 5.58049 5.72546 5.90747 5.98914 6.28762 6.90911 7.43034 8.93519 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.015203 B = 0.007712 C = 0.007054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.247085 B = 3629.718128 C = 3968.459880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.074 4.074 3 C -0.146 4.146 4 C 0.071 3.929 5 F -0.149 7.149 6 C -0.072 4.072 7 C 0.091 3.909 8 H 0.039 0.961 9 C -0.505 4.505 10 H 0.058 0.942 11 C 0.018 3.982 12 N -0.915 5.915 13 Si 0.945 3.055 14 H -0.279 1.279 15 H -0.287 1.287 16 H -0.263 1.263 17 C -0.138 4.138 18 C -0.166 4.166 19 C -0.184 4.184 20 C -0.083 4.083 21 C -0.052 4.052 22 Cl -0.060 7.060 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.158 0.842 27 H 0.260 0.740 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.136 -3.999 6.395 12.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.075 4.075 3 C -0.165 4.165 4 C 0.052 3.948 5 F -0.128 7.128 6 C -0.074 4.074 7 C 0.072 3.928 8 H 0.058 0.942 9 C -0.543 4.543 10 H 0.076 0.924 11 C -0.182 4.182 12 N -0.554 5.554 13 Si 0.771 3.229 14 H -0.205 1.205 15 H -0.213 1.213 16 H -0.187 1.187 17 C -0.156 4.156 18 C -0.203 4.203 19 C -0.220 4.220 20 C -0.101 4.101 21 C -0.078 4.078 22 Cl -0.031 7.031 23 H 0.109 0.891 24 H 0.103 0.897 25 H 0.095 0.905 26 H 0.175 0.825 27 H 0.069 0.931 28 H 0.117 0.883 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.090 0.910 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.140 -3.932 6.283 12.560 hybrid contribution 0.784 0.067 -1.192 1.429 sum -9.356 -3.865 5.091 11.331 Atomic orbital electron populations 1.20865 0.87370 1.04213 1.03983 1.19707 0.98247 0.89625 0.99922 1.21075 0.90966 0.99907 1.04531 1.18062 0.90776 0.81336 1.04627 1.91429 1.81022 1.46362 1.93991 1.20686 0.99271 0.91074 0.96319 1.17470 0.86030 0.97284 0.91985 0.94222 1.21152 1.42562 0.93277 0.97304 0.92351 1.25706 0.95297 0.95396 1.01803 1.70080 1.49196 1.06282 1.29796 0.85748 0.77924 0.79050 0.80189 1.20533 1.21264 1.18692 1.22389 0.96203 1.00617 0.96405 1.22707 0.93280 1.02074 1.02199 1.23021 1.05585 0.97151 0.96285 1.20688 0.91718 0.98191 0.99553 1.20844 0.91857 0.87365 1.07770 1.98311 1.76241 1.31570 1.97013 0.89146 0.89683 0.90531 0.82452 0.93114 0.88339 0.87551 0.91260 0.87182 0.90975 0.84771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.27 9.61 71.24 0.68 -1.59 16 2 C -0.07 -2.24 5.88 -19.85 -0.12 -2.36 16 3 C -0.15 -4.95 9.68 22.31 0.22 -4.74 16 4 C 0.07 3.07 7.25 22.38 0.16 3.24 16 5 F -0.15 -7.13 16.19 44.97 0.73 -6.41 16 6 C -0.07 -3.20 4.78 -19.82 -0.09 -3.30 16 7 C 0.09 4.44 2.22 -12.29 -0.03 4.42 16 8 H 0.04 2.24 6.00 -2.39 -0.01 2.23 16 9 C -0.51 -26.71 7.71 25.60 0.20 -26.52 16 10 H 0.06 3.02 7.82 -2.91 -0.02 3.00 16 11 C 0.02 0.96 5.45 84.65 0.46 1.43 16 12 N -0.92 -53.50 12.76 21.45 0.27 -53.23 16 13 Si 0.94 43.56 29.54 68.60 2.03 45.59 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 16 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 17 C -0.14 -5.63 4.93 -10.77 -0.05 -5.69 16 18 C -0.17 -6.27 10.01 30.59 0.31 -5.96 16 19 C -0.18 -6.60 10.18 30.62 0.31 -6.29 16 20 C -0.08 -3.21 8.45 22.28 0.19 -3.02 16 21 C -0.05 -1.71 6.31 22.32 0.14 -1.57 16 22 Cl -0.06 -1.65 27.29 -2.72 -0.07 -1.72 16 23 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 25 H 0.08 1.55 6.90 -2.38 -0.02 1.54 16 26 H 0.16 4.36 8.06 -2.91 -0.02 4.34 16 27 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 28 H 0.10 3.70 7.42 -2.39 -0.02 3.69 16 29 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 30 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 32 H 0.07 2.80 8.08 -2.39 -0.02 2.78 16 33 H 0.13 5.10 7.80 -2.91 -0.02 5.07 16 Total: -1.00 -60.45 300.62 6.45 -54.01 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 1.12 Total: 13.71 kcal Atomic # 6 Polarization: -54.33 SS G_CDS: 2.38 Total: -51.95 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 0.27 Total: -53.23 kcal Atomic # 9 Polarization: -7.13 SS G_CDS: 0.73 Total: -6.41 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.07 Total: -1.72 kcal Total: -60.45 6.45 -54.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260814111.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.384 kcal (2) G-P(sol) polarization free energy of solvation -60.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds