Wall clock time and date at job start Mon Mar 30 2020 08:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 120.00020 * 2 1 4 4 H 1.48499 * 109.47266 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47038 * 299.99323 * 3 2 1 6 6 H 1.48501 * 109.47479 * 59.99666 * 3 2 1 7 7 C 1.37875 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00620 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00058 * 0.02562 * 7 2 1 10 10 C 1.50690 * 109.47427 * 179.97438 * 9 7 2 11 11 N 1.31126 * 126.55526 * 89.97904 * 10 9 7 12 12 C 1.34492 * 105.61910 * 180.02562 * 11 10 9 13 13 C 1.50703 * 126.28978 * 180.02562 * 12 11 10 14 14 C 1.52998 * 109.47223 * 270.00283 * 13 12 11 15 15 H 1.08999 * 109.39321 * 54.80084 * 14 13 12 16 16 C 1.52588 * 109.39183 * 174.50429 * 14 13 12 17 17 C 1.52576 * 110.72546 * 190.82624 * 16 14 13 18 18 C 1.53101 * 109.95523 * 289.32180 * 17 16 14 19 19 S 1.81742 * 108.83868 * 63.02747 * 18 17 16 20 20 C 1.53099 * 109.38829 * 294.99950 * 14 13 12 21 21 N 1.29948 * 107.42516 * 0.02562 * 12 11 10 22 22 O 1.21303 * 110.24669 * 359.97438 * 21 12 11 23 23 H 0.97001 * 119.99966 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46828 * 59.99498 * 9 7 2 25 25 H 1.09005 * 109.46499 * 300.00031 * 9 7 2 26 26 H 1.08998 * 109.47127 * 30.00470 * 13 12 11 27 27 H 1.09003 * 109.47308 * 150.00238 * 13 12 11 28 28 H 1.09002 * 109.22173 * 311.14954 * 16 14 13 29 29 H 1.09000 * 109.22104 * 70.50406 * 16 14 13 30 30 H 1.09003 * 109.39028 * 169.17900 * 17 16 14 31 31 H 1.09000 * 109.31343 * 49.42179 * 17 16 14 32 32 H 1.09006 * 109.57569 * 303.22309 * 18 17 16 33 33 H 1.09001 * 109.68408 * 182.89604 * 18 17 16 34 34 H 1.08997 * 109.57719 * 296.63199 * 20 14 13 35 35 H 1.09000 * 109.57512 * 57.02310 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 7 2.7381 -4.2379 1.0538 12 6 3.5547 -5.1924 0.5733 13 6 4.3781 -6.1555 1.3891 14 6 5.7529 -5.5438 1.6657 15 1 5.6272 -4.5682 2.1351 16 6 6.5347 -6.4583 2.6042 17 6 7.7932 -5.7614 3.1127 18 6 8.8099 -5.6241 1.9763 19 16 8.1014 -4.5656 0.6798 20 6 6.5107 -5.3788 0.3456 21 7 3.5033 -5.1317 -0.7238 22 8 2.7479 -4.2491 -1.0731 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 3.8728 -6.3558 2.3338 27 1 4.4995 -7.0877 0.8373 28 1 5.9045 -6.7253 3.4525 29 1 6.8177 -7.3646 2.0688 30 1 8.2306 -6.3483 3.9205 31 1 7.5313 -4.7713 3.4856 32 1 9.0315 -6.6083 1.5635 33 1 9.7263 -5.1724 2.3561 34 1 6.6875 -6.3582 -0.0989 35 1 5.9237 -4.7658 -0.3383 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260814545.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:41 Heat of formation + Delta-G solvation = 19.424733 kcal Electronic energy + Delta-G solvation = -18054.314705 eV Core-core repulsion = 15179.947211 eV Total energy + Delta-G solvation = -2874.367495 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.40572 -38.95150 -36.75829 -35.81472 -34.26573 -32.98703 -30.38130 -29.02253 -28.10040 -26.02646 -24.56634 -23.32901 -21.93704 -21.32117 -19.25249 -18.41807 -18.12333 -17.77609 -16.79095 -16.38667 -15.98050 -15.28842 -15.18916 -14.77730 -14.48578 -14.46906 -14.14236 -13.93377 -13.69033 -13.31526 -12.94450 -12.92976 -12.63296 -12.50472 -12.36458 -12.27009 -12.15351 -11.88145 -11.82116 -11.77284 -11.40811 -10.75286 -10.69295 -10.56909 -8.79407 -8.33106 -6.46128 0.24801 0.73744 1.32757 1.40578 1.43217 1.54726 1.56159 2.02534 2.38000 2.78345 3.01657 3.18748 3.56140 3.68089 3.82657 3.91658 4.12458 4.18402 4.25375 4.39321 4.49807 4.63493 4.68394 4.70892 4.80095 4.96586 4.98554 5.02844 5.06471 5.10728 5.14885 5.23872 5.33720 5.56984 5.86363 6.58246 7.22876 7.26134 8.77992 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.021158 B = 0.004808 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.075296 B = 5822.714781 C = 6556.289540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.025 3.975 3 Si 0.967 3.033 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.543 4.543 8 H 0.049 0.951 9 C 0.109 3.891 10 C 0.229 3.771 11 N -0.520 5.520 12 C 0.169 3.831 13 C -0.014 4.014 14 C -0.077 4.077 15 H 0.061 0.939 16 C -0.115 4.115 17 C -0.120 4.120 18 C -0.066 4.066 19 S -0.335 6.335 20 C -0.063 4.063 21 N -0.414 5.414 22 O 0.043 5.957 23 H 0.273 0.727 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.949 -14.308 6.069 20.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.582 4.582 8 H 0.067 0.933 9 C 0.070 3.930 10 C 0.010 3.990 11 N -0.255 5.255 12 C -0.104 4.104 13 C -0.055 4.055 14 C -0.098 4.098 15 H 0.080 0.920 16 C -0.152 4.152 17 C -0.159 4.159 18 C -0.213 4.213 19 S -0.108 6.108 20 C -0.211 4.211 21 N -0.130 5.130 22 O -0.006 6.006 23 H 0.083 0.917 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.133 0.867 34 H 0.119 0.881 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.741 -13.859 5.460 20.957 hybrid contribution -0.635 0.372 0.033 0.737 sum 14.106 -13.487 5.493 20.274 Atomic orbital electron populations 1.69998 1.07205 1.28719 1.49319 1.25683 0.95799 1.02524 0.93634 0.85361 0.78437 0.78597 0.78463 1.19926 1.19463 1.19611 1.21014 0.92878 0.90339 1.53921 0.93288 1.17899 0.90023 0.84820 1.00256 1.29702 0.94762 0.94764 0.79731 1.71944 1.13997 1.10202 1.29336 1.26526 0.97660 0.97527 0.88680 1.20262 0.91909 0.94073 0.99225 1.21303 0.93015 1.00654 0.94872 0.92004 1.21550 0.96464 0.97888 0.99325 1.21729 0.94551 1.02100 0.97482 1.23576 1.01220 1.01379 0.95149 1.87297 1.23460 1.46002 1.54015 1.23462 0.93986 1.03353 1.00289 1.74491 1.13046 1.09147 1.16329 1.85234 1.43600 1.35161 1.36624 0.91749 0.92956 0.92561 0.86583 0.86880 0.88716 0.89615 0.87547 0.92019 0.88140 0.86689 0.88054 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.25 13.29 21.45 0.28 -50.96 16 2 C 0.02 1.34 5.46 84.66 0.46 1.80 16 3 Si 0.97 43.05 29.54 68.60 2.03 45.08 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.54 -30.06 9.09 25.60 0.23 -29.83 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.75 16 9 C 0.11 5.53 5.60 29.10 0.16 5.69 16 10 C 0.23 10.60 7.70 88.38 0.68 11.28 16 11 N -0.52 -22.53 11.55 -303.21 -3.50 -26.04 16 12 C 0.17 6.14 6.68 138.46 0.93 7.07 16 13 C -0.01 -0.34 5.29 29.85 0.16 -0.19 16 14 C -0.08 -1.76 2.02 -10.90 -0.02 -1.78 16 15 H 0.06 1.80 8.05 -2.39 -0.02 1.78 16 16 C -0.11 -1.63 4.92 30.32 0.15 -1.48 16 17 C -0.12 -1.64 5.75 30.49 0.18 -1.47 16 18 C -0.07 -1.02 6.45 72.02 0.46 -0.56 16 19 S -0.33 -8.78 22.33 -56.49 -1.26 -10.04 16 20 C -0.06 -1.63 5.59 72.02 0.40 -1.23 16 21 N -0.41 -16.38 11.37 -60.31 -0.69 -17.06 16 22 O 0.04 1.92 11.31 74.83 0.85 2.77 16 23 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 24 H 0.05 2.66 8.14 -2.39 -0.02 2.65 16 25 H 0.06 2.96 8.14 -2.38 -0.02 2.94 16 26 H 0.12 2.38 8.08 -2.39 -0.02 2.36 16 27 H 0.11 2.15 8.14 -2.39 -0.02 2.14 16 28 H 0.09 1.07 8.04 -2.39 -0.02 1.05 16 29 H 0.09 0.94 8.08 -2.39 -0.02 0.92 16 30 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 1.09 8.05 -2.39 -0.02 1.07 16 32 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.07 2.33 6.68 -2.39 -0.02 2.31 16 Total: -1.00 -63.56 305.30 2.58 -60.98 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: 1.08 Total: 5.97 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 3.79 Total: -10.69 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -3.90 Total: -94.06 kcal Atomic # 8 Polarization: 1.92 SS G_CDS: 0.85 Total: 2.77 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.26 Total: -10.04 kcal Total: -63.56 2.58 -60.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260814545.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.400 kcal (2) G-P(sol) polarization free energy of solvation -63.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds