Wall clock time and date at job start Mon Mar 30 2020 08:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36001 * 117.00304 * 2 1 4 4 C 1.38746 * 120.03030 * 0.02562 * 3 2 1 5 5 C 1.38221 * 120.12950 * 179.97438 * 4 3 2 6 6 C 1.50707 * 119.89809 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47484 * 89.99374 * 6 5 4 8 8 H 1.07998 * 119.99740 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00213 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99591 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00103 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47214 * 90.00045 * 11 9 7 13 13 H 1.48498 * 109.47020 * 209.99956 * 11 9 7 14 14 H 1.48502 * 109.47239 * 330.00279 * 11 9 7 15 15 C 1.38208 * 120.20313 * 359.97438 * 5 4 3 16 16 C 1.38871 * 120.06381 * 0.02562 * 15 5 4 17 17 S 1.76195 * 120.07069 * 180.02562 * 16 15 5 18 18 C 1.81408 * 102.99795 * 359.97438 * 17 16 15 19 19 C 1.38873 * 120.03278 * 179.72778 * 3 2 1 20 20 O 1.36109 * 120.09953 * 359.97405 * 19 3 2 21 21 C 1.42899 * 116.99941 * 90.00071 * 20 19 3 22 22 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46938 * 59.99841 * 1 2 3 24 24 H 1.09004 * 109.46926 * 299.99962 * 1 2 3 25 25 H 1.07998 * 119.92922 * 0.02562 * 4 3 2 26 26 H 1.08999 * 109.46617 * 210.00345 * 6 5 4 27 27 H 1.09006 * 109.46837 * 329.99290 * 6 5 4 28 28 H 0.96998 * 119.99797 * 179.97438 * 10 9 7 29 29 H 1.07998 * 119.96978 * 180.02562 * 15 5 4 30 30 H 1.09007 * 109.46452 * 60.00234 * 18 17 16 31 31 H 1.08999 * 109.46892 * 179.97438 * 18 17 16 32 32 H 1.08998 * 109.46976 * 300.00747 * 18 17 16 33 33 H 1.09002 * 109.47673 * 60.00108 * 21 20 19 34 34 H 1.09000 * 109.47273 * 180.02562 * 21 20 19 35 35 H 1.09002 * 109.47395 * 299.99801 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2915 2.3758 0.0005 5 6 1.9170 3.6084 0.0011 6 6 1.0918 4.8695 0.0022 7 6 0.8172 5.2889 1.4234 8 1 1.2021 4.7013 2.2437 9 6 0.0755 6.4233 1.6763 10 7 -0.3927 7.1391 0.6772 11 14 -0.2643 6.9436 3.4379 12 1 0.8175 7.8476 3.9045 13 1 -1.5660 7.6553 3.5015 14 1 -0.3144 5.7414 4.3082 15 6 3.2968 3.6880 0.0016 16 6 4.0605 2.5281 0.0011 17 16 5.8195 2.6293 0.0024 18 6 6.1253 4.4174 0.0035 19 6 3.4333 1.2852 0.0057 20 8 4.1772 0.1453 0.0119 21 6 4.5371 -0.4012 -1.2584 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 0.2131 2.3186 0.0014 26 1 1.6374 5.6611 -0.5114 27 1 0.1479 4.6866 -0.5115 28 1 -0.9148 7.9370 0.8552 29 1 3.7815 4.6530 0.0024 30 1 5.6794 4.8616 0.8935 31 1 7.1995 4.6022 0.0049 32 1 5.6807 4.8626 -0.8865 33 1 5.1248 0.3289 -1.8149 34 1 5.1267 -1.3061 -1.1108 35 1 3.6342 -0.6439 -1.8187 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260824736.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:11:26 Heat of formation + Delta-G solvation = -57.168682 kcal Electronic energy + Delta-G solvation = -18284.118829 eV Core-core repulsion = 15374.137244 eV Total energy + Delta-G solvation = -2909.981585 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.05046 -37.77057 -36.86544 -33.27160 -30.99012 -30.23489 -28.56111 -27.78352 -27.07592 -25.81141 -23.15225 -22.17206 -20.80366 -17.93269 -16.86295 -16.49187 -16.37312 -15.77572 -15.69230 -14.89539 -14.67842 -14.43053 -13.98933 -13.63112 -13.52417 -13.27088 -12.61480 -12.51366 -12.14253 -11.88536 -11.64385 -11.45826 -11.20620 -11.15630 -10.89102 -10.71852 -10.60336 -10.16421 -9.77359 -9.62574 -9.51610 -8.82340 -8.51800 -7.62959 -7.09092 -6.14027 -4.18573 1.55107 1.72831 1.82477 2.64167 3.24770 3.31445 3.35874 3.57379 3.87511 4.26765 4.40611 5.20091 5.21017 5.24183 5.25610 5.38157 5.44286 5.50643 5.56990 5.63624 5.66899 5.70662 5.79632 5.83387 5.94576 6.04494 6.54384 6.73691 6.91262 7.08023 7.37532 7.43914 7.65951 7.81600 7.97151 8.19076 8.86609 9.46042 10.95777 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.017274 B = 0.006362 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.563252 B = 4400.300928 C = 5562.802414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.125 3.875 4 C -0.202 4.202 5 C 0.019 3.981 6 C 0.048 3.952 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.060 3.940 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.272 1.272 15 C -0.158 4.158 16 C -0.069 4.069 17 S -0.107 6.107 18 C -0.149 4.149 19 C 0.048 3.952 20 O -0.317 6.317 21 C 0.034 3.966 22 H 0.095 0.905 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.133 0.867 26 H 0.032 0.968 27 H 0.032 0.968 28 H 0.263 0.737 29 H 0.128 0.872 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.499 -10.366 -4.188 13.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.078 3.922 4 C -0.222 4.222 5 C 0.017 3.983 6 C 0.011 3.989 7 C -0.553 4.553 8 H 0.077 0.923 9 C -0.141 4.141 10 N -0.531 5.531 11 Si 0.723 3.277 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.197 1.197 15 C -0.182 4.182 16 C -0.182 4.182 17 S 0.135 5.865 18 C -0.318 4.318 19 C -0.002 4.002 20 O -0.234 6.234 21 C -0.061 4.061 22 H 0.113 0.887 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.151 0.849 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.146 0.854 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.103 0.897 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.485 -11.309 -4.075 14.714 hybrid contribution -1.596 1.646 0.749 2.412 sum 6.889 -9.663 -3.325 12.325 Atomic orbital electron populations 1.23054 0.78717 1.03304 1.01859 1.86076 1.21029 1.26553 1.88863 1.19149 0.90846 0.84764 0.97464 1.21164 1.00216 0.91119 1.09739 1.20453 0.93200 0.96456 0.88171 1.18403 0.94203 0.88178 0.98096 1.21012 1.33540 1.09510 0.91189 0.92330 1.24996 0.95518 0.96262 0.97373 1.69952 1.35828 1.16583 1.30781 0.86523 0.77736 0.78832 0.84593 1.20484 1.21068 1.19718 1.20947 0.94101 0.96096 1.07041 1.21729 0.96717 0.95035 1.04737 1.85206 1.00272 1.08329 1.92688 1.23715 1.05861 0.95907 1.06306 1.17019 0.86163 0.84842 1.12172 1.86138 1.70282 1.38466 1.28496 1.22917 0.99355 0.98183 0.85680 0.88660 0.92670 0.92310 0.84933 0.95000 0.94982 0.92718 0.85413 0.89342 0.87804 0.89692 0.93657 0.89518 0.93998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.31 -5.29 10.28 -34.38 -0.35 -5.65 16 3 C 0.12 2.36 6.69 -39.16 -0.26 2.10 16 4 C -0.20 -3.99 8.69 -39.40 -0.34 -4.33 16 5 C 0.02 0.42 5.07 -104.64 -0.53 -0.11 16 6 C 0.05 1.20 5.10 -29.03 -0.15 1.05 16 7 C -0.51 -14.02 9.09 -34.44 -0.31 -14.34 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 11 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 15 C -0.16 -3.13 9.01 -39.36 -0.35 -3.49 16 16 C -0.07 -1.28 6.12 -38.98 -0.24 -1.52 16 17 S -0.11 -1.64 22.04 -107.50 -2.37 -4.01 16 18 C -0.15 -1.85 9.15 101.05 0.92 -0.92 16 19 C 0.05 0.91 5.74 -38.98 -0.22 0.69 16 20 O -0.32 -5.66 9.57 -34.72 -0.33 -5.99 16 21 C 0.03 0.46 11.13 101.05 1.13 1.59 16 22 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 24 H 0.06 0.76 7.66 -51.93 -0.40 0.36 16 25 H 0.13 2.46 6.29 -52.49 -0.33 2.13 16 26 H 0.03 0.82 8.08 -51.93 -0.42 0.40 16 27 H 0.03 0.83 8.08 -51.93 -0.42 0.41 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 29 H 0.13 2.40 5.87 -52.49 -0.31 2.09 16 30 H 0.09 1.15 7.75 -51.92 -0.40 0.74 16 31 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16 32 H 0.08 1.02 7.75 -51.93 -0.40 0.62 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 312.99 15.07 4.72 4.72 Total: -1.00 -30.63 312.99 -6.82 -37.46 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -4.73 Total: -1.34 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 0.53 Total: -16.40 kcal Atomic # 7 Polarization: -25.62 SS G_CDS: 0.74 Total: -24.88 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -0.69 Total: -11.64 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.37 Total: -4.01 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.63 -6.82 -37.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260824736.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.712 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds