Wall clock time and date at job start Mon Mar 30 2020 07:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38254 * 120.00093 * 2 1 4 4 C 1.38213 * 119.99908 * 179.97438 * 3 2 1 5 5 C 1.38257 * 120.00229 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99978 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.47235 * 89.99266 * 6 5 4 8 8 C 1.50704 * 109.46905 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00025 * 0.02562 * 8 7 6 10 10 C 1.37870 * 119.99634 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00418 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99842 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46878 * 90.00483 * 12 10 8 14 14 H 1.48502 * 109.47388 * 210.00412 * 12 10 8 15 15 H 1.48498 * 109.47240 * 330.00860 * 12 10 8 16 16 C 1.38210 * 119.99819 * 359.73497 * 5 4 3 17 17 C 1.38209 * 119.99823 * 179.97438 * 2 1 3 18 18 S 1.76197 * 120.00447 * 0.02562 * 17 2 1 19 19 C 1.81399 * 104.44807 * 294.99988 * 18 17 2 20 20 O 1.42104 * 104.28201 * 178.93048 * 18 17 2 21 21 O 1.42102 * 104.27661 * 51.06703 * 18 17 2 22 22 H 1.09002 * 109.46875 * 270.01657 * 1 2 3 23 23 H 1.08998 * 109.47256 * 30.01508 * 1 2 3 24 24 H 1.09007 * 109.47399 * 150.02137 * 1 2 3 25 25 H 1.08001 * 120.00058 * 0.02562 * 3 2 1 26 26 H 1.08003 * 119.99980 * 180.02562 * 4 3 2 27 27 H 1.08996 * 109.47095 * 209.99520 * 6 5 4 28 28 H 1.09001 * 109.46856 * 329.99505 * 6 5 4 29 29 H 1.08996 * 109.47287 * 300.00137 * 7 6 5 30 30 H 1.09002 * 109.46573 * 60.00015 * 7 6 5 31 31 H 0.96998 * 120.00402 * 179.97438 * 11 10 8 32 32 H 1.07997 * 119.99784 * 180.27493 * 16 5 4 33 33 H 1.09001 * 109.47190 * 299.99593 * 19 18 17 34 34 H 1.09004 * 109.47089 * 59.99727 * 19 18 17 35 35 H 1.09004 * 109.47568 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7787 -0.0001 0.0017 7 6 6.2876 -0.0005 1.4446 8 6 7.7946 -0.0011 1.4457 9 1 8.3353 -0.0008 0.5108 10 6 8.4831 -0.0011 2.6402 11 7 7.8247 -0.0010 3.7787 12 14 10.3511 -0.0011 2.6416 13 1 10.8461 1.3990 2.6421 14 1 10.8452 -0.7012 3.8545 15 1 10.8470 -0.7010 1.4295 16 6 3.5806 -1.1970 0.0055 17 6 2.1980 -1.1969 0.0005 18 16 1.3171 -2.7229 0.0005 19 6 0.4472 -2.7434 1.5922 20 8 2.3343 -3.7149 -0.0246 21 8 0.3928 -2.5940 -1.0711 22 1 -0.3633 0.0003 1.0277 23 1 -0.3634 0.8898 -0.5141 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6583 2.1326 0.0004 26 1 4.1204 2.1326 0.0010 27 1 6.1424 -0.8898 -0.5121 28 1 6.1424 0.8901 -0.5115 29 1 5.9239 0.8892 1.9585 30 1 5.9238 -0.8907 1.9578 31 1 8.3090 -0.0013 4.6191 32 1 4.1206 -2.1322 0.0100 33 1 1.1732 -2.6927 2.4037 34 1 -0.2236 -1.8862 1.6508 35 1 -0.1310 -3.6633 1.6786 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260827477.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:23 Heat of formation + Delta-G solvation = -83.868992 kcal Electronic energy + Delta-G solvation = -18084.954032 eV Core-core repulsion = 15173.814634 eV Total energy + Delta-G solvation = -2911.139398 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.55312 -38.26022 -37.01251 -36.28206 -34.56205 -32.24120 -32.04651 -30.25458 -28.48071 -25.98828 -24.27567 -23.26738 -21.93155 -19.81674 -18.65417 -17.84692 -17.43726 -17.08020 -16.65356 -16.53265 -16.13912 -15.26591 -15.06499 -14.58971 -14.51204 -14.15489 -13.97768 -13.87848 -13.55586 -13.32530 -13.26153 -13.11729 -12.94621 -12.83706 -12.67327 -12.45702 -12.21239 -11.90845 -11.85331 -11.59882 -11.41229 -11.17417 -10.58133 -10.24659 -9.48242 -8.22115 -6.34039 -0.85552 -0.10537 0.34070 1.39304 1.40783 1.52077 1.89607 2.38566 2.47707 2.93607 3.10940 3.24387 3.74255 3.83823 3.98805 4.08402 4.17401 4.24111 4.35049 4.50831 4.65893 4.72726 4.78125 4.82658 4.92694 4.94520 5.10323 5.14356 5.31247 5.38533 5.45589 5.46688 5.75652 5.80033 5.95646 6.20052 6.81831 7.35447 8.89544 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.028321 B = 0.004505 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.414043 B = 6214.166183 C = 6655.346127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.005 4.005 3 C -0.139 4.139 4 C -0.073 4.073 5 C -0.112 4.112 6 C -0.069 4.069 7 C 0.036 3.964 8 C -0.546 4.546 9 H 0.061 0.939 10 C 0.002 3.998 11 N -0.932 5.932 12 Si 0.966 3.034 13 H -0.270 1.270 14 H -0.281 1.281 15 H -0.265 1.265 16 C -0.044 4.044 17 C -0.667 4.667 18 S 2.501 3.499 19 C -0.628 4.628 20 O -0.986 6.986 21 O -0.961 6.961 22 H 0.114 0.886 23 H 0.102 0.898 24 H 0.098 0.902 25 H 0.163 0.837 26 H 0.137 0.863 27 H 0.058 0.942 28 H 0.070 0.930 29 H -0.005 1.005 30 H -0.011 1.011 31 H 0.264 0.736 32 H 0.126 0.874 33 H 0.144 0.856 34 H 0.161 0.839 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.020 -0.365 -4.594 19.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.006 4.006 3 C -0.157 4.157 4 C -0.091 4.091 5 C -0.112 4.112 6 C -0.106 4.106 7 C -0.001 4.001 8 C -0.584 4.584 9 H 0.079 0.921 10 C -0.196 4.196 11 N -0.572 5.572 12 Si 0.790 3.210 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.189 1.189 16 C -0.063 4.063 17 C -0.753 4.753 18 S 2.685 3.315 19 C -0.782 4.782 20 O -0.983 6.983 21 O -0.958 6.958 22 H 0.132 0.868 23 H 0.121 0.879 24 H 0.116 0.884 25 H 0.181 0.819 26 H 0.155 0.845 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.014 0.986 30 H 0.008 0.992 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.163 0.837 34 H 0.180 0.820 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -18.973 -0.972 -5.111 19.673 hybrid contribution 1.638 0.635 0.773 1.919 sum -17.335 -0.338 -4.338 17.872 Atomic orbital electron populations 1.21785 0.88026 1.07452 1.05701 1.19920 0.97406 0.91314 0.91986 1.21512 0.93447 0.99167 1.01557 1.21604 0.95390 0.97742 0.94331 1.20337 0.96565 0.94027 1.00320 1.20605 0.89617 1.01833 0.98594 1.18929 0.94826 0.94958 0.91344 1.21689 0.92988 1.50877 0.92858 0.92061 1.25969 1.03978 0.94551 0.95131 1.70093 1.37662 1.51481 0.97996 0.85434 0.79067 0.78592 0.77876 1.19531 1.20683 1.18891 1.20870 0.93027 0.98622 0.93813 1.30419 1.04956 1.20012 1.19903 1.04966 0.74607 0.72866 0.79036 1.30106 1.15120 1.14816 1.18126 1.93519 1.58436 1.58216 1.88147 1.93489 1.64043 1.85779 1.52536 0.86820 0.87941 0.88371 0.81933 0.84503 0.92310 0.91173 0.98620 0.99247 0.92685 0.85594 0.83712 0.82050 0.81904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 8.46 71.23 0.60 -1.97 16 2 C -0.01 -0.13 5.86 -19.87 -0.12 -0.24 16 3 C -0.14 -3.44 9.70 22.27 0.22 -3.22 16 4 C -0.07 -2.29 9.70 22.27 0.22 -2.07 16 5 C -0.11 -4.22 5.13 -19.87 -0.10 -4.32 16 6 C -0.07 -2.99 5.28 29.85 0.16 -2.83 16 7 C 0.04 1.97 4.96 29.85 0.15 2.12 16 8 C -0.55 -31.54 9.11 25.60 0.23 -31.30 16 9 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 10 C 0.00 0.09 5.46 84.65 0.46 0.56 16 11 N -0.93 -57.01 13.29 21.44 0.28 -56.73 16 12 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 14 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 15 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 16 C -0.04 -1.61 9.16 22.27 0.20 -1.41 16 17 C -0.67 -19.18 5.58 22.27 0.12 -19.06 16 18 S 2.50 58.76 5.20 -56.49 -0.29 58.46 16 19 C -0.63 -7.13 10.59 113.37 1.20 -5.93 16 20 O -0.99 -32.17 16.74 -127.65 -2.14 -34.31 16 21 O -0.96 -25.41 15.36 -127.65 -1.96 -27.37 16 22 H 0.11 0.93 7.10 -2.39 -0.02 0.91 16 23 H 0.10 1.17 8.09 -2.39 -0.02 1.15 16 24 H 0.10 1.57 4.90 -2.38 -0.01 1.56 16 25 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 26 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 27 H 0.06 2.53 8.09 -2.39 -0.02 2.51 16 28 H 0.07 2.85 8.09 -2.39 -0.02 2.83 16 29 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 32 H 0.13 4.82 7.21 -2.91 -0.02 4.80 16 33 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.16 0.97 6.01 -2.39 -0.01 0.95 16 35 H 0.16 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -78.96 304.65 2.35 -76.61 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 1.08 Total: 6.44 kcal Atomic # 6 Polarization: -73.03 SS G_CDS: 3.35 Total: -69.69 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.28 Total: -56.73 kcal Atomic # 8 Polarization: -57.58 SS G_CDS: -4.10 Total: -61.68 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 58.76 SS G_CDS: -0.29 Total: 58.46 kcal Total: -78.96 2.35 -76.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260827477.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.255 kcal (2) G-P(sol) polarization free energy of solvation -78.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds