Wall clock time and date at job start Mon Mar 30 2020 08:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46817 * 179.97438 * 9 7 2 11 11 N 1.29952 * 126.28937 * 269.68798 * 10 9 7 12 12 O 1.21296 * 110.25360 * 179.84011 * 11 10 9 13 13 C 1.33651 * 109.81120 * 0.43069 * 12 11 10 14 14 C 1.50689 * 126.55158 * 179.71257 * 13 12 11 15 15 C 1.52998 * 109.47585 * 270.02017 * 14 13 12 16 16 H 1.08998 * 109.38976 * 305.20657 * 15 14 13 17 17 C 1.52582 * 109.39330 * 185.49495 * 15 14 13 18 18 C 1.52583 * 110.72236 * 169.17911 * 17 15 14 19 19 C 1.53097 * 109.95996 * 70.67649 * 18 17 15 20 20 S 1.81744 * 108.84102 * 296.97463 * 19 18 17 21 21 C 1.53105 * 109.38788 * 64.99912 * 15 14 13 22 22 N 1.31138 * 106.89445 * 359.73374 * 13 12 11 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 25 25 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 26 26 H 1.08999 * 109.47485 * 30.02772 * 14 13 12 27 27 H 1.09007 * 109.47190 * 150.02038 * 14 13 12 28 28 H 1.09000 * 109.22685 * 289.49681 * 17 15 14 29 29 H 1.08996 * 109.22120 * 48.85836 * 17 15 14 30 30 H 1.09000 * 109.39126 * 310.52572 * 18 17 15 31 31 H 1.09007 * 109.30700 * 190.77202 * 18 17 15 32 32 H 1.09003 * 109.57637 * 177.16046 * 19 18 17 33 33 H 1.09003 * 109.68068 * 56.83960 * 19 18 17 34 34 H 1.08999 * 109.57725 * 302.98512 * 21 15 14 35 35 H 1.09007 * 109.57107 * 63.36919 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6446 -0.0027 11 7 2.7258 -4.2319 -1.0507 12 8 3.4871 -5.1151 -0.7165 13 6 3.5445 -5.1830 0.6171 14 6 4.3673 -6.1472 1.4320 15 6 3.5490 -7.4104 1.7069 16 1 2.6047 -7.1348 2.1762 17 6 4.3303 -8.3261 2.6445 18 6 3.4458 -9.4615 3.1513 19 6 3.1522 -10.4430 2.0136 20 16 2.2175 -9.5768 0.7178 21 6 3.2685 -8.1317 0.3858 22 7 2.7475 -4.2506 1.0808 23 1 -0.4849 0.8400 0.0004 24 1 0.6240 -2.5575 0.8880 25 1 0.6247 -2.5562 -0.8920 26 1 5.2694 -6.4116 0.8803 27 1 4.6435 -5.6803 2.3775 28 1 5.1817 -8.7461 2.1090 29 1 4.6917 -7.7462 3.4937 30 1 2.5082 -9.0504 3.5255 31 1 3.9588 -9.9854 3.9579 32 1 2.5625 -11.2771 2.3939 33 1 4.0891 -10.8166 1.6002 34 1 2.7547 -7.4557 -0.2975 35 1 4.2087 -8.4583 -0.0587 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260841351.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:39 Heat of formation + Delta-G solvation = 38.147307 kcal Electronic energy + Delta-G solvation = -17924.435675 eV Core-core repulsion = 15050.880052 eV Total energy + Delta-G solvation = -2873.555623 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.84847 -38.06176 -35.41547 -34.00559 -32.93307 -31.34712 -28.65677 -27.89850 -27.25616 -24.12386 -23.18542 -22.15081 -20.74563 -20.26628 -17.63108 -17.02997 -16.61775 -16.26049 -15.61622 -15.20468 -14.69466 -14.60793 -14.01756 -13.71180 -13.25897 -13.06381 -12.71112 -12.50718 -12.39462 -11.78057 -11.69928 -11.58180 -11.33988 -11.13381 -11.06153 -10.92623 -10.76206 -10.59237 -10.26057 -10.02328 -9.90572 -9.65789 -8.88860 -8.51180 -7.87590 -6.13732 -4.17658 1.54658 1.79583 2.32230 3.11221 3.28142 3.29874 3.33914 3.38975 4.18425 4.31282 4.38751 4.46549 4.50418 4.65137 4.81054 4.96331 5.07334 5.16099 5.17008 5.23539 5.26587 5.39141 5.45925 5.52491 5.60637 5.74378 5.75651 5.90091 6.01409 6.53924 6.86540 7.32162 7.40673 7.80016 8.11669 8.82459 9.00956 9.45629 10.97237 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.040432 B = 0.003722 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.349466 B = 7520.649367 C = 7670.290294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.099 3.901 10 C 0.216 3.784 11 N -0.400 5.400 12 O 0.058 5.942 13 C 0.142 3.858 14 C -0.012 4.012 15 C -0.086 4.086 16 H 0.095 0.905 17 C -0.122 4.122 18 C -0.122 4.122 19 C -0.084 4.084 20 S -0.265 6.265 21 C -0.079 4.079 22 N -0.471 5.471 23 H 0.265 0.735 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.696 -20.188 6.004 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.074 0.926 9 C 0.060 3.940 10 C -0.056 4.056 11 N -0.110 5.110 12 O 0.003 5.997 13 C -0.079 4.079 14 C -0.053 4.053 15 C -0.108 4.108 16 H 0.113 0.887 17 C -0.160 4.160 18 C -0.160 4.160 19 C -0.232 4.232 20 S -0.037 6.037 21 C -0.227 4.227 22 N -0.206 5.206 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.115 0.885 27 H 0.129 0.871 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.124 0.876 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.136 -19.928 4.990 22.096 hybrid contribution 1.656 1.197 0.475 2.097 sum 9.792 -18.732 5.466 21.832 Atomic orbital electron populations 1.69940 1.06014 1.27237 1.49710 1.24950 0.94965 0.99350 0.94740 0.86411 0.79726 0.82584 0.78263 1.20428 1.20888 1.19787 1.20833 0.92947 0.89416 1.52219 0.92598 1.17848 0.90452 0.85763 0.99886 1.26942 0.98776 0.98289 0.81585 1.74636 1.08789 1.03574 1.24040 1.85236 1.48328 1.41835 1.24296 1.28546 0.98494 0.97687 0.83196 1.20140 0.95730 0.90775 0.98676 1.21434 1.00710 0.93454 0.95155 0.88685 1.21556 0.98283 0.96586 0.99544 1.21721 1.01317 0.95889 0.97123 1.23470 1.02676 1.00270 0.96827 1.87102 1.36823 1.28484 1.51332 1.23616 1.02106 0.96862 1.00130 1.71925 1.10844 1.07337 1.30445 0.92510 0.93006 0.93472 0.88465 0.87148 0.91312 0.90253 0.90290 0.90619 0.87919 0.89901 0.87606 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.97 9.09 -34.44 -0.31 -15.29 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.10 2.70 5.60 -29.03 -0.16 2.54 16 10 C 0.22 5.22 7.41 -156.37 -1.16 4.07 16 11 N -0.40 -9.10 12.16 30.90 0.38 -8.73 16 12 O 0.06 1.08 10.65 18.08 0.19 1.27 16 13 C 0.14 2.37 6.92 -13.06 -0.09 2.28 16 14 C -0.01 -0.13 5.29 -27.89 -0.15 -0.28 16 15 C -0.09 -0.81 2.02 -90.78 -0.18 -1.00 16 16 H 0.09 1.10 8.05 -51.93 -0.42 0.68 16 17 C -0.12 -0.81 4.92 -27.16 -0.13 -0.94 16 18 C -0.12 -0.80 5.75 -26.89 -0.15 -0.95 16 19 C -0.08 -0.61 6.45 37.21 0.24 -0.37 16 20 S -0.26 -2.90 22.33 -107.50 -2.40 -5.30 16 21 C -0.08 -0.82 5.59 37.21 0.21 -0.61 16 22 N -0.47 -10.04 11.55 -9.86 -0.11 -10.15 16 23 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.05 1.45 8.14 -51.93 -0.42 1.03 16 25 H 0.05 1.34 8.14 -51.93 -0.42 0.91 16 26 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.11 1.02 8.08 -51.93 -0.42 0.60 16 28 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 29 H 0.08 0.46 8.04 -51.93 -0.42 0.04 16 30 H 0.08 0.61 8.05 -51.93 -0.42 0.19 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.11 1.35 6.77 -51.93 -0.35 1.00 16 35 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 LS Contribution 305.47 15.07 4.60 4.60 Total: -1.00 -32.46 305.47 -8.57 -41.03 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: -4.95 Total: -5.00 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -1.99 Total: -8.86 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 1.00 Total: -44.55 kcal Atomic # 8 Polarization: 1.08 SS G_CDS: 0.19 Total: 1.27 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -2.90 SS G_CDS: -2.40 Total: -5.30 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.46 -8.57 -41.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260841351.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.177 kcal (2) G-P(sol) polarization free energy of solvation -32.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds