Wall clock time and date at job start Mon Mar 30 2020 07:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38230 * 120.00346 * 2 1 4 4 C 1.38235 * 120.00326 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.99814 * 359.97438 * 4 3 2 6 6 S 1.76199 * 120.00037 * 179.97438 * 5 4 3 7 7 O 1.42097 * 104.27804 * 206.07108 * 6 5 4 8 8 O 1.42095 * 104.28135 * 333.93385 * 6 5 4 9 9 C 1.81403 * 104.44778 * 90.00567 * 6 5 4 10 10 H 1.08995 * 109.47420 * 64.99965 * 9 6 5 11 11 C 1.53004 * 109.46993 * 304.99771 * 9 6 5 12 12 C 1.53006 * 109.47273 * 185.00256 * 9 6 5 13 13 C 1.50700 * 109.46845 * 294.99787 * 12 9 6 14 14 H 1.08005 * 120.00200 * 359.97438 * 13 12 9 15 15 C 1.37872 * 120.00235 * 180.02562 * 13 12 9 16 16 N 1.31517 * 119.99763 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00336 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47450 * 89.99357 * 17 15 13 19 19 H 1.48504 * 109.47123 * 209.99673 * 17 15 13 20 20 H 1.48506 * 109.47160 * 329.99639 * 17 15 13 21 21 C 1.38239 * 120.00062 * 0.02871 * 5 4 3 22 22 C 1.38235 * 120.00123 * 359.97128 * 21 5 4 23 23 H 1.09001 * 109.47250 * 89.99762 * 1 2 3 24 24 H 1.08999 * 109.47144 * 209.99851 * 1 2 3 25 25 H 1.09000 * 109.47061 * 329.99795 * 1 2 3 26 26 H 1.08000 * 120.00356 * 359.97438 * 3 2 1 27 27 H 1.08000 * 120.00616 * 179.70664 * 4 3 2 28 28 H 1.09000 * 109.46931 * 59.99797 * 11 9 6 29 29 H 1.09002 * 109.47243 * 180.02562 * 11 9 6 30 30 H 1.08995 * 109.47196 * 300.00331 * 11 9 6 31 31 H 1.08997 * 109.47102 * 54.99642 * 12 9 6 32 32 H 1.08996 * 109.46921 * 174.99939 * 12 9 6 33 33 H 0.97003 * 120.00080 * 180.02562 * 16 15 13 34 34 H 1.08005 * 120.00087 * 180.02562 * 21 5 4 35 35 H 1.07999 * 120.00181 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 16 6.0336 -0.0002 -0.0019 7 8 6.3836 -1.2374 -0.6068 8 8 6.3838 1.2365 -0.6078 9 6 6.4876 0.0004 1.7544 10 1 6.1580 -0.9307 2.2152 11 6 5.8142 1.1824 2.4548 12 6 8.0066 0.1262 1.8886 13 6 8.6652 -1.0981 1.3070 14 1 8.0609 -1.8872 0.8844 15 6 10.0393 -1.2115 1.3153 16 7 10.7752 -0.2508 1.8304 17 14 10.8558 -2.7287 0.5938 18 1 11.1313 -2.5043 -0.8480 19 1 12.1319 -2.9905 1.3068 20 1 9.9532 -3.8977 0.7491 21 6 3.5804 -1.1973 -0.0006 22 6 2.1981 -1.1973 -0.0001 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6583 2.1324 -0.0004 27 1 4.1206 2.1323 -0.0053 28 1 4.7321 1.0929 2.3592 29 1 6.0874 1.1830 3.5101 30 1 6.1438 2.1135 1.9940 31 1 8.3467 1.0115 1.3514 32 1 8.2720 0.2159 2.9419 33 1 11.7419 -0.3303 1.8360 34 1 4.1204 -2.1326 -0.0002 35 1 1.6581 -2.1325 0.0003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261339332.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:53 Heat of formation + Delta-G solvation = -64.496935 kcal Electronic energy + Delta-G solvation = -18489.587758 eV Core-core repulsion = 15579.288396 eV Total energy + Delta-G solvation = -2910.299362 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.31437 -36.36428 -35.16822 -34.83645 -33.11267 -32.13846 -31.03409 -27.86786 -27.08484 -23.56024 -22.81167 -21.97194 -21.07677 -18.46508 -17.27070 -16.51554 -16.00441 -15.57590 -15.28438 -14.64280 -14.41077 -14.21435 -14.01810 -13.54025 -13.31856 -12.68525 -12.51697 -12.41080 -12.22061 -11.99958 -11.82581 -11.58855 -11.31886 -11.29395 -11.08067 -10.91281 -10.69142 -10.54258 -10.35624 -9.83364 -9.43890 -9.15937 -9.02498 -8.97412 -8.42460 -6.09546 -4.16187 0.68318 0.99105 1.30921 3.35523 3.41485 3.43500 3.47436 3.71286 4.44371 4.58253 4.61175 4.64231 4.82373 4.91527 5.13109 5.28231 5.30659 5.32936 5.41493 5.43694 5.52475 5.63441 5.76329 5.81102 5.96410 6.12283 6.15674 6.21302 6.38430 6.43673 6.44912 6.85708 7.38129 7.42518 7.89305 8.14016 8.94084 9.53479 11.01064 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.035384 B = 0.005430 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.121268 B = 5155.500500 C = 5481.907656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.045 4.045 3 C -0.146 4.146 4 C -0.021 4.021 5 C -0.662 4.662 6 S 2.499 3.501 7 O -0.933 6.933 8 O -0.948 6.948 9 C -0.538 4.538 10 H 0.128 0.872 11 C -0.142 4.142 12 C 0.035 3.965 13 C -0.560 4.560 14 H 0.078 0.922 15 C 0.068 3.932 16 N -0.889 5.889 17 Si 0.895 3.105 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.269 1.269 21 C -0.021 4.021 22 C -0.145 4.145 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.128 0.872 27 H 0.140 0.860 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.264 0.736 34 H 0.142 0.858 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.983 1.630 -0.362 19.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.045 4.045 3 C -0.165 4.165 4 C -0.039 4.039 5 C -0.746 4.746 6 S 2.679 3.321 7 O -0.930 6.930 8 O -0.945 6.945 9 C -0.651 4.651 10 H 0.146 0.854 11 C -0.200 4.200 12 C -0.003 4.003 13 C -0.597 4.597 14 H 0.096 0.904 15 C -0.135 4.135 16 N -0.527 5.527 17 Si 0.722 3.278 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.193 1.193 21 C -0.039 4.039 22 C -0.164 4.164 23 H 0.093 0.907 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.146 0.854 27 H 0.158 0.842 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.159 0.841 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.332 1.681 -1.075 18.440 hybrid contribution -0.101 -0.830 0.269 0.879 sum -18.433 0.850 -0.806 18.470 Atomic orbital electron populations 1.20893 0.90949 1.03115 1.02685 1.20188 0.96163 0.93448 0.94697 1.21138 0.94241 0.97737 1.03407 1.20986 0.94461 0.96983 0.91510 1.31219 1.28299 0.99044 1.16023 1.05799 0.72593 0.74706 0.79048 1.93504 1.80931 1.44322 1.74220 1.93471 1.81624 1.45064 1.74372 1.29974 1.09748 1.06094 1.19268 0.85438 1.21705 0.98903 0.96712 1.02661 1.19079 0.82239 0.98646 1.00349 1.21584 0.92621 1.04890 1.40652 0.90391 1.24967 0.97356 0.96611 0.94601 1.69962 1.05704 1.32630 1.44401 0.86528 0.78628 0.83157 0.79516 1.20119 1.21136 1.19325 1.21014 0.94496 0.97089 0.91338 1.21149 0.94248 0.97757 1.03270 0.90682 0.91181 0.91186 0.85402 0.84188 0.92541 0.90585 0.91131 0.94684 0.93558 0.92618 0.84058 0.85385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.01 36.00 0.36 -0.52 16 2 C -0.04 -0.49 5.88 -104.62 -0.62 -1.11 16 3 C -0.15 -1.71 9.70 -39.59 -0.38 -2.09 16 4 C -0.02 -0.29 8.46 -39.58 -0.33 -0.63 16 5 C -0.66 -10.71 4.87 -39.58 -0.19 -10.91 16 6 S 2.50 50.89 4.33 -107.50 -0.46 50.42 16 7 O -0.93 -21.77 15.44 -57.54 -0.89 -22.66 16 8 O -0.95 -21.35 17.11 -57.54 -0.98 -22.33 16 9 C -0.54 -10.49 2.87 -26.73 -0.08 -10.56 16 10 H 0.13 2.25 8.14 -51.93 -0.42 1.83 16 11 C -0.14 -2.21 8.90 37.16 0.33 -1.88 16 12 C 0.04 0.88 4.45 -27.88 -0.12 0.76 16 13 C -0.56 -15.77 8.36 -34.44 -0.29 -16.05 16 14 H 0.08 2.17 6.37 -52.48 -0.33 1.83 16 15 C 0.07 1.96 5.46 -17.82 -0.10 1.86 16 16 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 17 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 C -0.02 -0.30 9.47 -39.58 -0.37 -0.68 16 22 C -0.15 -1.73 9.70 -39.58 -0.38 -2.12 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 25 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 26 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 27 H 0.14 1.85 7.57 -52.49 -0.40 1.45 16 28 H 0.06 0.72 6.58 -51.93 -0.34 0.38 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.14 1.96 7.57 -52.48 -0.40 1.56 16 35 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 306.69 15.07 4.62 4.62 Total: -1.00 -34.08 306.69 -9.01 -43.09 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -4.83 Total: -0.74 kcal Atomic # 6 Polarization: -41.75 SS G_CDS: -2.18 Total: -43.93 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.74 Total: -25.67 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -1.87 Total: -44.99 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: 50.89 SS G_CDS: -0.46 Total: 50.42 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.08 -9.01 -43.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261339332.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.406 kcal (2) G-P(sol) polarization free energy of solvation -34.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds