Wall clock time and date at job start Mon Mar 30 2020 07:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28719 * 4 3 2 6 6 S 1.76202 * 120.00249 * 179.97438 * 5 4 3 7 7 O 1.42105 * 104.27459 * 206.06967 * 6 5 4 8 8 O 1.42099 * 104.27401 * 333.92438 * 6 5 4 9 9 C 1.81400 * 104.45022 * 89.99542 * 6 5 4 10 10 H 1.08996 * 109.47258 * 299.99840 * 9 6 5 11 11 C 1.53001 * 109.46936 * 60.00021 * 9 6 5 12 12 C 1.52997 * 109.46937 * 179.97438 * 9 6 5 13 13 C 1.50703 * 109.47225 * 65.00269 * 12 9 6 14 14 H 1.08001 * 119.99713 * 359.97438 * 13 12 9 15 15 C 1.37872 * 120.00098 * 179.97438 * 13 12 9 16 16 N 1.31522 * 119.99762 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00384 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.47088 * 89.99971 * 17 15 13 19 19 H 1.48502 * 109.47373 * 210.00235 * 17 15 13 20 20 H 1.48506 * 109.46912 * 330.00153 * 17 15 13 21 21 C 1.38238 * 119.99712 * 359.97124 * 5 4 3 22 22 C 1.38233 * 120.00012 * 359.96176 * 21 5 4 23 23 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 24 24 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 25 25 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 26 26 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 27 27 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 28 28 H 1.09004 * 109.46886 * 179.97438 * 11 9 6 29 29 H 1.08995 * 109.47515 * 299.99955 * 11 9 6 30 30 H 1.09003 * 109.47019 * 60.00423 * 11 9 6 31 31 H 1.08995 * 109.47230 * 185.00053 * 12 9 6 32 32 H 1.08998 * 109.47564 * 305.00528 * 12 9 6 33 33 H 0.96999 * 119.99579 * 180.02562 * 16 15 13 34 34 H 1.08002 * 119.99672 * 179.97438 * 21 5 4 35 35 H 1.08004 * 119.99493 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0055 6 16 6.0337 -0.0001 0.0122 7 8 6.3863 -1.2357 -0.5946 8 8 6.3864 1.2383 -0.5888 9 6 6.4797 -0.0042 1.7705 10 1 6.0710 0.8847 2.2511 11 6 5.9059 -1.2550 2.4393 12 6 8.0033 -0.0052 1.9101 13 6 8.5589 1.2835 1.3609 14 1 7.8920 2.0285 0.9527 15 6 9.9186 1.5114 1.3796 16 7 10.4034 2.6363 0.9007 17 14 11.0720 0.2232 2.0862 18 1 11.4938 -0.7078 1.0090 19 1 12.2680 0.8909 2.6599 20 1 10.3710 -0.5376 3.1517 21 6 3.5805 -1.1972 0.0001 22 6 2.1981 -1.1972 -0.0042 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5137 25 1 -0.3633 0.8900 0.5139 26 1 1.6582 2.1325 0.0004 27 1 4.1205 2.1324 0.0100 28 1 6.1743 -1.2576 3.4957 29 1 4.8205 -1.2548 2.3398 30 1 6.3147 -2.1439 1.9587 31 1 8.2716 -0.0972 2.9625 32 1 8.4186 -0.8459 1.3544 33 1 11.3600 2.7965 0.9135 34 1 4.1205 -2.1325 -0.0005 35 1 1.6582 -2.1325 -0.0080 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261339333.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:01 Heat of formation + Delta-G solvation = -58.632690 kcal Electronic energy + Delta-G solvation = -18511.931378 eV Core-core repulsion = 15601.886309 eV Total energy + Delta-G solvation = -2910.045070 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.31543 -36.39184 -35.19525 -34.95815 -33.10497 -32.15994 -31.03712 -28.30729 -27.20943 -23.47004 -22.80265 -21.94570 -20.94859 -18.48735 -17.33068 -16.83129 -16.04232 -15.62658 -15.28331 -14.69750 -14.36241 -14.15318 -14.01963 -13.54033 -13.26344 -12.93819 -12.52527 -12.46187 -12.31133 -12.20031 -12.00026 -11.89634 -11.31725 -11.29053 -11.11153 -11.07936 -10.68885 -10.38546 -10.22030 -9.83143 -9.63820 -9.16334 -9.02973 -8.98540 -8.58967 -6.07811 -4.12129 0.64868 0.97157 1.30699 3.28963 3.36038 3.36926 3.42409 3.66872 4.39971 4.54716 4.59577 4.64192 4.79538 4.91376 5.08219 5.23715 5.29167 5.30853 5.32162 5.38151 5.52527 5.58133 5.70318 5.80967 5.95864 6.00142 6.15235 6.19966 6.24650 6.32209 6.38522 6.85475 6.89327 6.97518 7.57545 8.40988 9.03379 9.50416 11.04367 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.038178 B = 0.005442 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.228196 B = 5144.299447 C = 5401.980780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.044 4.044 3 C -0.145 4.145 4 C -0.019 4.019 5 C -0.663 4.663 6 S 2.499 3.501 7 O -0.951 6.951 8 O -0.917 6.917 9 C -0.535 4.535 10 H 0.133 0.867 11 C -0.144 4.144 12 C -0.001 4.001 13 C -0.560 4.560 14 H 0.098 0.902 15 C 0.080 3.920 16 N -0.886 5.886 17 Si 0.868 3.132 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.263 1.263 21 C -0.022 4.022 22 C -0.147 4.147 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.129 0.871 27 H 0.144 0.856 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.026 0.974 33 H 0.266 0.734 34 H 0.140 0.860 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.315 -7.084 1.689 19.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.044 4.044 3 C -0.164 4.164 4 C -0.038 4.038 5 C -0.747 4.747 6 S 2.678 3.322 7 O -0.948 6.948 8 O -0.914 6.914 9 C -0.647 4.647 10 H 0.151 0.849 11 C -0.202 4.202 12 C -0.039 4.039 13 C -0.598 4.598 14 H 0.116 0.884 15 C -0.124 4.124 16 N -0.523 5.523 17 Si 0.694 3.306 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.188 1.188 21 C -0.041 4.041 22 C -0.166 4.166 23 H 0.093 0.907 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.147 0.853 27 H 0.161 0.839 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.157 0.843 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.667 -6.968 0.913 19.013 hybrid contribution 0.088 -0.494 0.950 1.074 sum -17.579 -7.462 1.862 19.188 Atomic orbital electron populations 1.20894 0.90939 1.03116 1.02708 1.20193 0.96176 0.93448 0.94624 1.21163 0.94259 0.97792 1.03150 1.21049 0.94512 0.97186 0.91009 1.31197 1.28177 0.99067 1.16220 1.05803 0.72807 0.74872 0.78739 1.93469 1.81801 1.45467 1.74112 1.93572 1.80444 1.43657 1.73700 1.29818 1.08459 1.05831 1.20556 0.84902 1.21723 0.99938 0.95820 1.02746 1.19527 0.85507 0.99054 0.99843 1.21457 0.94131 1.02376 1.41832 0.88375 1.24941 0.98027 0.95151 0.94250 1.69916 1.13356 1.24161 1.44866 0.86965 0.80971 0.82371 0.80293 1.19698 1.20930 1.18763 1.20971 0.94470 0.96910 0.91724 1.21130 0.94232 0.97729 1.03498 0.90660 0.91205 0.91149 0.85309 0.83871 0.90613 0.92255 0.91051 0.93655 0.95549 0.92444 0.84266 0.85432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.01 36.00 0.36 -0.52 16 2 C -0.04 -0.48 5.88 -104.63 -0.62 -1.10 16 3 C -0.14 -1.74 9.70 -39.58 -0.38 -2.13 16 4 C -0.02 -0.28 9.47 -39.58 -0.37 -0.65 16 5 C -0.66 -10.65 5.06 -39.58 -0.20 -10.85 16 6 S 2.50 50.23 4.40 -107.50 -0.47 49.76 16 7 O -0.95 -20.64 17.01 -57.54 -0.98 -21.61 16 8 O -0.92 -22.07 15.18 -57.54 -0.87 -22.94 16 9 C -0.53 -10.01 2.83 -26.73 -0.08 -10.09 16 10 H 0.13 2.28 8.14 -51.93 -0.42 1.85 16 11 C -0.14 -2.10 8.97 37.16 0.33 -1.77 16 12 C 0.00 -0.02 3.51 -27.88 -0.10 -0.11 16 13 C -0.56 -15.88 8.81 -34.44 -0.30 -16.18 16 14 H 0.10 2.98 6.54 -52.49 -0.34 2.63 16 15 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 16 N -0.89 -27.44 13.96 55.43 0.77 -26.67 16 17 Si 0.87 21.32 27.47 -169.99 -4.67 16.66 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 20 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 21 C -0.02 -0.31 8.53 -39.58 -0.34 -0.64 16 22 C -0.15 -1.69 9.70 -39.58 -0.38 -2.08 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 25 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 26 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 27 H 0.14 2.06 7.57 -52.49 -0.40 1.67 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.71 6.71 -51.93 -0.35 0.36 16 30 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 31 H 0.05 1.01 7.20 -51.93 -0.37 0.64 16 32 H 0.03 0.61 7.57 -51.93 -0.39 0.22 16 33 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.14 1.77 7.57 -52.49 -0.40 1.37 16 35 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 LS Contribution 303.02 15.07 4.57 4.57 Total: -1.00 -35.06 303.02 -8.63 -43.68 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -4.79 Total: 0.43 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: -2.18 Total: -43.87 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.77 Total: -26.67 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -1.85 Total: -44.55 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.66 kcal Atomic # 16 Polarization: 50.23 SS G_CDS: -0.47 Total: 49.76 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.06 -8.63 -43.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261339333.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.949 kcal (2) G-P(sol) polarization free energy of solvation -35.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds