Wall clock time and date at job start Mon Mar 30 2020 07:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28719 * 4 3 2 6 6 S 1.76202 * 120.00249 * 179.97438 * 5 4 3 7 7 O 1.42105 * 104.27459 * 206.06967 * 6 5 4 8 8 O 1.42099 * 104.27401 * 333.92438 * 6 5 4 9 9 C 1.81400 * 104.45022 * 89.99542 * 6 5 4 10 10 H 1.08996 * 109.47258 * 299.99840 * 9 6 5 11 11 C 1.53001 * 109.46936 * 60.00021 * 9 6 5 12 12 C 1.52997 * 109.46937 * 179.97438 * 9 6 5 13 13 C 1.50703 * 109.47225 * 65.00269 * 12 9 6 14 14 H 1.08001 * 119.99713 * 359.97438 * 13 12 9 15 15 C 1.37872 * 120.00098 * 179.97438 * 13 12 9 16 16 N 1.31522 * 119.99762 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00384 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.47088 * 89.99971 * 17 15 13 19 19 H 1.48502 * 109.47373 * 210.00235 * 17 15 13 20 20 H 1.48506 * 109.46912 * 330.00153 * 17 15 13 21 21 C 1.38238 * 119.99712 * 359.97124 * 5 4 3 22 22 C 1.38233 * 120.00012 * 359.96176 * 21 5 4 23 23 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 24 24 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 25 25 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 26 26 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 27 27 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 28 28 H 1.09004 * 109.46886 * 179.97438 * 11 9 6 29 29 H 1.08995 * 109.47515 * 299.99955 * 11 9 6 30 30 H 1.09003 * 109.47019 * 60.00423 * 11 9 6 31 31 H 1.08995 * 109.47230 * 185.00053 * 12 9 6 32 32 H 1.08998 * 109.47564 * 305.00528 * 12 9 6 33 33 H 0.96999 * 119.99579 * 180.02562 * 16 15 13 34 34 H 1.08002 * 119.99672 * 179.97438 * 21 5 4 35 35 H 1.08004 * 119.99493 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0055 6 16 6.0337 -0.0001 0.0122 7 8 6.3863 -1.2357 -0.5946 8 8 6.3864 1.2383 -0.5888 9 6 6.4797 -0.0042 1.7705 10 1 6.0710 0.8847 2.2511 11 6 5.9059 -1.2550 2.4393 12 6 8.0033 -0.0052 1.9101 13 6 8.5589 1.2835 1.3609 14 1 7.8920 2.0285 0.9527 15 6 9.9186 1.5114 1.3796 16 7 10.4034 2.6363 0.9007 17 14 11.0720 0.2232 2.0862 18 1 11.4938 -0.7078 1.0090 19 1 12.2680 0.8909 2.6599 20 1 10.3710 -0.5376 3.1517 21 6 3.5805 -1.1972 0.0001 22 6 2.1981 -1.1972 -0.0042 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5137 25 1 -0.3633 0.8900 0.5139 26 1 1.6582 2.1325 0.0004 27 1 4.1205 2.1324 0.0100 28 1 6.1743 -1.2576 3.4957 29 1 4.8205 -1.2548 2.3398 30 1 6.3147 -2.1439 1.9587 31 1 8.2716 -0.0972 2.9625 32 1 8.4186 -0.8459 1.3544 33 1 11.3600 2.7965 0.9135 34 1 4.1205 -2.1325 -0.0005 35 1 1.6582 -2.1325 -0.0080 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261339333.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:55 Heat of formation + Delta-G solvation = -83.242931 kcal Electronic energy + Delta-G solvation = -18512.998558 eV Core-core repulsion = 15601.886309 eV Total energy + Delta-G solvation = -2911.112250 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.29195 -38.04472 -36.88348 -36.64254 -34.33336 -33.89737 -32.02879 -30.03237 -28.08312 -25.17248 -23.81318 -23.17011 -22.47292 -19.89507 -18.98321 -18.72538 -17.53197 -16.89875 -16.49768 -16.25620 -15.80475 -15.39389 -14.97892 -14.77707 -14.53274 -14.50070 -14.10852 -13.99576 -13.44488 -13.16164 -13.13105 -13.01278 -12.98423 -12.91516 -12.70291 -12.48705 -12.07377 -11.93556 -11.79890 -11.63779 -11.49687 -10.94763 -10.77400 -10.02804 -10.00759 -8.30289 -6.39987 -0.78618 -0.16053 0.31874 1.34243 1.36568 1.46513 2.15230 2.33401 2.47362 3.00874 3.06672 3.26893 3.74011 3.81822 3.89002 3.95316 3.98162 4.34719 4.38109 4.42897 4.68043 4.72939 4.76962 4.79247 4.84300 5.00060 5.03282 5.11844 5.15225 5.15719 5.22760 5.27351 5.49593 5.50377 5.91361 6.19507 6.77014 7.25991 8.86073 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.038178 B = 0.005442 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.228196 B = 5144.299447 C = 5401.980780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.035 4.035 3 C -0.146 4.146 4 C -0.042 4.042 5 C -0.669 4.669 6 S 2.484 3.516 7 O -0.980 6.980 8 O -0.979 6.979 9 C -0.526 4.526 10 H 0.143 0.857 11 C -0.143 4.143 12 C -0.006 4.006 13 C -0.569 4.569 14 H 0.059 0.941 15 C 0.011 3.989 16 N -0.942 5.942 17 Si 0.935 3.065 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.230 1.230 21 C -0.033 4.033 22 C -0.142 4.142 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.155 0.845 27 H 0.130 0.870 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.028 0.972 33 H 0.268 0.732 34 H 0.148 0.852 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.248 -9.690 3.450 23.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.035 4.035 3 C -0.164 4.164 4 C -0.061 4.061 5 C -0.758 4.758 6 S 2.671 3.329 7 O -0.977 6.977 8 O -0.976 6.976 9 C -0.640 4.640 10 H 0.161 0.839 11 C -0.201 4.201 12 C -0.045 4.045 13 C -0.607 4.607 14 H 0.077 0.923 15 C -0.187 4.187 16 N -0.581 5.581 17 Si 0.756 3.244 18 H -0.194 1.194 19 H -0.203 1.203 20 H -0.153 1.153 21 C -0.052 4.052 22 C -0.160 4.160 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.101 0.899 26 H 0.173 0.827 27 H 0.148 0.852 28 H 0.115 0.885 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.166 0.834 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -20.563 -9.584 2.671 22.843 hybrid contribution 0.770 0.373 0.355 0.926 sum -19.793 -9.211 3.026 22.040 Atomic orbital electron populations 1.21005 0.87769 1.04791 1.03967 1.20711 0.98381 0.92592 0.91794 1.21493 0.92941 0.99844 1.02149 1.21124 0.96104 0.96344 0.92578 1.30337 1.24478 1.00842 1.20143 1.05562 0.74735 0.73281 0.79348 1.93414 1.83437 1.45644 1.75216 1.93499 1.82778 1.45733 1.75616 1.29684 1.05764 1.08928 1.19586 0.83913 1.21827 1.01655 0.93268 1.03378 1.19516 0.88530 0.96077 1.00368 1.21817 0.94035 1.03737 1.41119 0.92317 1.26009 1.00233 0.97615 0.94873 1.70085 1.13944 1.26870 1.47181 0.85895 0.78642 0.79450 0.80367 1.19402 1.20265 1.15282 1.21206 0.95889 0.96144 0.91988 1.21563 0.93128 0.99628 1.01720 0.89349 0.89293 0.89862 0.82696 0.85238 0.88462 0.89377 0.90589 0.91718 0.95390 0.92277 0.83433 0.81767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 10.01 71.23 0.71 -0.42 16 2 C -0.03 -0.62 5.88 -19.87 -0.12 -0.74 16 3 C -0.15 -3.17 9.70 22.27 0.22 -2.96 16 4 C -0.04 -1.26 9.47 22.27 0.21 -1.05 16 5 C -0.67 -21.45 5.06 22.27 0.11 -21.33 16 6 S 2.48 104.15 4.40 -56.49 -0.25 103.90 16 7 O -0.98 -43.88 17.01 -127.65 -2.17 -46.06 16 8 O -0.98 -51.25 15.18 -127.65 -1.94 -53.19 16 9 C -0.53 -19.62 2.83 30.59 0.09 -19.54 16 10 H 0.14 4.96 8.14 -2.39 -0.02 4.94 16 11 C -0.14 -3.79 8.97 71.98 0.65 -3.15 16 12 C -0.01 -0.30 3.51 29.85 0.10 -0.19 16 13 C -0.57 -33.56 8.81 25.60 0.23 -33.34 16 14 H 0.06 3.84 6.54 -2.91 -0.02 3.82 16 15 C 0.01 0.66 5.47 84.65 0.46 1.12 16 16 N -0.94 -61.11 13.96 21.45 0.30 -60.81 16 17 Si 0.93 44.08 27.47 68.60 1.88 45.96 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 20 H -0.23 -9.54 6.54 99.48 0.65 -8.89 16 21 C -0.03 -0.86 8.53 22.27 0.19 -0.67 16 22 C -0.14 -2.69 9.70 22.27 0.22 -2.48 16 23 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.09 0.58 8.09 -2.39 -0.02 0.56 16 25 H 0.08 0.64 8.09 -2.39 -0.02 0.62 16 26 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 27 H 0.13 4.05 7.57 -2.91 -0.02 4.03 16 28 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.09 1.83 6.71 -2.39 -0.02 1.82 16 30 H 0.08 1.96 8.11 -2.39 -0.02 1.94 16 31 H 0.06 2.74 7.20 -2.39 -0.02 2.73 16 32 H 0.03 1.28 7.57 -2.39 -0.02 1.27 16 33 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 34 H 0.15 3.46 7.57 -2.91 -0.02 3.43 16 35 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -81.81 303.02 1.91 -79.90 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 1.02 Total: 15.03 kcal Atomic # 6 Polarization: -87.80 SS G_CDS: 3.07 Total: -84.73 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: 0.30 Total: -60.81 kcal Atomic # 8 Polarization: -95.13 SS G_CDS: -4.11 Total: -99.24 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.96 kcal Atomic # 16 Polarization: 104.15 SS G_CDS: -0.25 Total: 103.90 kcal Total: -81.81 1.91 -79.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261339333.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.347 kcal (2) G-P(sol) polarization free energy of solvation -81.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds