Wall clock time and date at job start Mon Mar 30 2020 07:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00394 * 2 1 4 4 H 1.48498 * 109.47385 * 270.00243 * 3 2 1 5 5 H 1.48503 * 109.46959 * 30.00303 * 3 2 1 6 6 H 1.48500 * 109.46670 * 149.99970 * 3 2 1 7 7 C 1.37885 * 119.99405 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99343 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00240 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47343 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47343 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00411 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00343 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00628 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47735 * 179.97438 * 14 13 11 16 16 C 1.38233 * 119.60308 * 94.99775 * 15 14 13 17 17 C 1.38613 * 119.17625 * 180.02562 * 16 15 14 18 18 C 1.38780 * 118.40577 * 0.25575 * 17 16 15 19 19 Cl 1.73608 * 120.42624 * 179.72626 * 18 17 16 20 20 C 1.38302 * 119.13930 * 359.50003 * 18 17 16 21 21 N 1.31846 * 119.60674 * 275.02279 * 15 14 13 22 22 H 0.97009 * 119.99409 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47017 * 59.99800 * 9 7 2 24 24 H 1.09000 * 109.46990 * 300.00309 * 9 7 2 25 25 H 1.09003 * 109.47220 * 59.99933 * 10 9 7 26 26 H 1.09000 * 109.47337 * 300.00106 * 10 9 7 27 27 H 0.97005 * 120.00049 * 359.97438 * 13 11 10 28 28 H 1.09003 * 109.46854 * 59.99555 * 14 13 11 29 29 H 1.09000 * 109.46868 * 300.00239 * 14 13 11 30 30 H 1.08002 * 120.41515 * 0.04798 * 16 15 14 31 31 H 1.08002 * 120.79267 * 179.97438 * 17 16 15 32 32 H 1.08004 * 119.62475 * 180.23223 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4399 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0018 11 6 1.4914 -4.9672 -0.0025 12 8 0.2786 -4.9672 -0.0015 13 7 2.1652 -6.1345 -0.0031 14 6 1.4327 -7.4031 -0.0031 15 6 2.4118 -8.5486 -0.0045 16 6 2.7769 -9.1364 1.1922 17 6 3.6785 -10.1891 1.1807 18 6 4.1863 -10.6101 -0.0404 19 17 5.3242 -11.9191 -0.1151 20 6 3.7703 -9.9765 -1.1972 21 7 2.9104 -8.9780 -1.1471 22 1 -0.4850 0.8402 0.0004 23 1 0.6238 -2.5567 -0.8903 24 1 0.6245 -2.5570 0.8897 25 1 2.8723 -3.6049 0.8877 26 1 2.8710 -3.6041 -0.8922 27 1 3.1352 -6.1346 -0.0035 28 1 0.8056 -7.4605 -0.8929 29 1 0.8064 -7.4611 0.8871 30 1 2.3644 -8.7800 2.1246 31 1 3.9822 -10.6671 2.1003 32 1 4.1575 -10.3003 -2.1520 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292025514.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:27 Heat of formation + Delta-G solvation = -22.607353 kcal Electronic energy + Delta-G solvation = -16748.873215 eV Core-core repulsion = 13734.806271 eV Total energy + Delta-G solvation = -3014.066943 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.80872 -39.04099 -37.14680 -34.83956 -33.43825 -32.94756 -31.77581 -30.80087 -27.23448 -25.26218 -24.20356 -22.58142 -21.43523 -19.73817 -17.64799 -17.18289 -16.94714 -16.26889 -15.73008 -15.32755 -15.02205 -14.57313 -14.36175 -14.03851 -13.62313 -13.13721 -13.06287 -12.53677 -12.30687 -12.14785 -11.96321 -11.65218 -11.15398 -10.91928 -10.59288 -10.33570 -9.99182 -9.94752 -9.67655 -9.50354 -9.13983 -8.96330 -8.85611 -8.30924 -5.95145 -3.99405 0.36386 0.68516 1.53465 3.03620 3.23333 3.34300 3.40245 3.42793 3.66000 3.87176 4.18766 4.24016 4.44253 4.48686 4.73351 5.15856 5.24684 5.36475 5.39864 5.49556 5.64624 5.78324 6.00943 6.23236 6.25298 6.60705 6.89557 7.41457 7.75369 7.82728 7.87421 8.08235 8.39541 8.74414 9.09103 9.64036 11.15820 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.044632 B = 0.002781 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.197644 B =10066.439646 C =10393.124059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.512 3.488 12 O -0.532 6.532 13 N -0.738 5.738 14 C 0.170 3.830 15 C 0.119 3.881 16 C -0.141 4.141 17 C -0.066 4.066 18 C -0.089 4.089 19 Cl -0.055 7.055 20 C 0.116 3.884 21 N -0.453 5.453 22 H 0.261 0.739 23 H 0.024 0.976 24 H 0.024 0.976 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.398 0.602 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.294 -24.295 1.886 26.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.301 3.699 12 O -0.407 6.407 13 N -0.393 5.393 14 C 0.045 3.955 15 C -0.019 4.019 16 C -0.161 4.161 17 C -0.093 4.093 18 C -0.119 4.119 19 Cl -0.026 7.026 20 C -0.042 4.042 21 N -0.162 5.162 22 H 0.070 0.930 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.232 0.768 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.167 0.833 31 H 0.165 0.835 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 9.049 -23.860 1.109 25.543 hybrid contribution 1.376 0.206 0.766 1.588 sum 10.425 -23.654 1.875 25.918 Atomic orbital electron populations 1.70001 1.06053 1.26573 1.50208 1.25029 0.94830 0.99230 0.95321 0.86588 0.79759 0.83507 0.78072 1.20670 1.21231 1.19900 1.21223 0.92932 0.91014 1.51367 0.92611 1.18906 0.93179 0.89331 0.98677 1.21869 1.00740 0.91677 1.02579 1.21600 0.88655 0.85379 0.74254 1.90680 1.14400 1.87470 1.48157 1.46152 1.10077 1.04731 1.78358 1.20046 0.91657 0.79796 1.03979 1.21491 0.95707 0.96247 0.88421 1.22121 0.97865 0.96126 1.00018 1.21587 0.94808 0.95548 0.97319 1.22178 0.97952 0.95181 0.96544 1.98394 1.58877 1.46632 1.98712 1.22856 0.92930 0.90946 0.97500 1.67716 1.08371 1.11037 1.29055 0.92952 0.95763 0.95771 0.90192 0.90144 0.76848 0.89643 0.89765 0.83284 0.83455 0.81575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.48 13.29 55.43 0.74 -26.74 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -14.97 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.04 0.98 4.26 -27.89 -0.12 0.87 16 10 C -0.13 -2.60 5.64 -27.89 -0.16 -2.75 16 11 C 0.51 9.73 7.83 -10.99 -0.09 9.65 16 12 O -0.53 -12.37 15.98 5.55 0.09 -12.28 16 13 N -0.74 -10.31 5.55 -61.48 -0.34 -10.66 16 14 C 0.17 2.08 5.98 -5.20 -0.03 2.05 16 15 C 0.12 1.22 6.15 -82.59 -0.51 0.71 16 16 C -0.14 -1.11 9.72 -39.44 -0.38 -1.50 16 17 C -0.07 -0.47 9.98 -39.24 -0.39 -0.86 16 18 C -0.09 -0.70 6.34 -39.36 -0.25 -0.95 16 19 Cl -0.05 -0.39 28.99 -51.86 -1.50 -1.89 16 20 C 0.12 1.02 10.99 -17.51 -0.19 0.83 16 21 N -0.45 -4.97 10.27 -9.45 -0.10 -5.06 16 22 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 23 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 24 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 25 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 26 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.40 4.65 8.46 -40.82 -0.35 4.30 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 30 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.17 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 303.75 15.07 4.58 4.58 Total: -1.00 -34.08 303.75 -7.77 -41.85 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -3.68 Total: -0.82 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -2.53 Total: -5.66 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.30 Total: -42.46 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.09 Total: -12.28 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.50 Total: -1.89 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.08 -7.77 -41.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292025514.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.244 kcal (2) G-P(sol) polarization free energy of solvation -34.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds