Wall clock time and date at job start Mon Mar 30 2020 07:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00394 * 2 1 4 4 H 1.48498 * 109.47385 * 270.00243 * 3 2 1 5 5 H 1.48503 * 109.46959 * 30.00303 * 3 2 1 6 6 H 1.48500 * 109.46670 * 149.99970 * 3 2 1 7 7 C 1.37885 * 119.99405 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99343 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00240 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47343 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47343 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00411 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00343 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00628 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47735 * 179.97438 * 14 13 11 16 16 C 1.38233 * 119.60308 * 94.99775 * 15 14 13 17 17 C 1.38613 * 119.17625 * 180.02562 * 16 15 14 18 18 C 1.38780 * 118.40577 * 0.25575 * 17 16 15 19 19 Cl 1.73608 * 120.42624 * 179.72626 * 18 17 16 20 20 C 1.38302 * 119.13930 * 359.50003 * 18 17 16 21 21 N 1.31846 * 119.60674 * 275.02279 * 15 14 13 22 22 H 0.97009 * 119.99409 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47017 * 59.99800 * 9 7 2 24 24 H 1.09000 * 109.46990 * 300.00309 * 9 7 2 25 25 H 1.09003 * 109.47220 * 59.99933 * 10 9 7 26 26 H 1.09000 * 109.47337 * 300.00106 * 10 9 7 27 27 H 0.97005 * 120.00049 * 359.97438 * 13 11 10 28 28 H 1.09003 * 109.46854 * 59.99555 * 14 13 11 29 29 H 1.09000 * 109.46868 * 300.00239 * 14 13 11 30 30 H 1.08002 * 120.41515 * 0.04798 * 16 15 14 31 31 H 1.08002 * 120.79267 * 179.97438 * 17 16 15 32 32 H 1.08004 * 119.62475 * 180.23223 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4399 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0018 11 6 1.4914 -4.9672 -0.0025 12 8 0.2786 -4.9672 -0.0015 13 7 2.1652 -6.1345 -0.0031 14 6 1.4327 -7.4031 -0.0031 15 6 2.4118 -8.5486 -0.0045 16 6 2.7769 -9.1364 1.1922 17 6 3.6785 -10.1891 1.1807 18 6 4.1863 -10.6101 -0.0404 19 17 5.3242 -11.9191 -0.1151 20 6 3.7703 -9.9765 -1.1972 21 7 2.9104 -8.9780 -1.1471 22 1 -0.4850 0.8402 0.0004 23 1 0.6238 -2.5567 -0.8903 24 1 0.6245 -2.5570 0.8897 25 1 2.8723 -3.6049 0.8877 26 1 2.8710 -3.6041 -0.8922 27 1 3.1352 -6.1346 -0.0035 28 1 0.8056 -7.4605 -0.8929 29 1 0.8064 -7.4611 0.8871 30 1 2.3644 -8.7800 2.1246 31 1 3.9822 -10.6671 2.1003 32 1 4.1575 -10.3003 -2.1520 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292025514.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:23 Heat of formation + Delta-G solvation = -46.471973 kcal Electronic energy + Delta-G solvation = -16749.908062 eV Core-core repulsion = 13734.806271 eV Total energy + Delta-G solvation = -3015.101791 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.54813 -40.50046 -37.75500 -36.08095 -35.51005 -33.59080 -33.19002 -32.28372 -28.57427 -26.93585 -24.83874 -23.83203 -22.89056 -21.27056 -18.89359 -18.25582 -17.89629 -17.52984 -17.19280 -16.52214 -16.42416 -16.26197 -15.28522 -14.88567 -14.77174 -14.45309 -14.16090 -14.12510 -13.53418 -13.25140 -13.15809 -13.00037 -12.79986 -12.46264 -12.25312 -11.90086 -11.62598 -11.29258 -10.95152 -10.87808 -10.64207 -10.55589 -10.13875 -9.97278 -8.16685 -6.30435 -0.31413 0.08032 0.93883 1.43250 1.45926 1.56791 1.70816 2.11499 2.44143 2.70297 3.06862 3.16393 3.52145 3.68581 3.83462 3.99744 4.11886 4.42842 4.51933 4.58249 4.61018 4.67287 4.80467 4.94055 5.09341 5.34314 5.38905 5.52339 5.65711 5.87400 6.19409 6.53708 6.73586 6.88077 7.30654 7.39699 8.95984 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.044632 B = 0.002781 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.197644 B =10066.439646 C =10393.124059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.974 3.026 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.255 1.255 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.041 3.959 10 C -0.119 4.119 11 C 0.516 3.484 12 O -0.584 6.584 13 N -0.713 5.713 14 C 0.171 3.829 15 C 0.104 3.896 16 C -0.132 4.132 17 C -0.061 4.061 18 C -0.087 4.087 19 Cl -0.046 7.046 20 C 0.108 3.892 21 N -0.481 5.481 22 H 0.263 0.737 23 H -0.018 1.018 24 H -0.014 1.014 25 H 0.107 0.893 26 H 0.101 0.899 27 H 0.413 0.587 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.170 0.830 31 H 0.175 0.825 32 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.069 -25.177 2.679 28.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.179 1.179 7 C -0.581 4.581 8 H 0.093 0.907 9 C 0.004 3.996 10 C -0.158 4.158 11 C 0.304 3.696 12 O -0.464 6.464 13 N -0.367 5.367 14 C 0.047 3.953 15 C -0.033 4.033 16 C -0.153 4.153 17 C -0.087 4.087 18 C -0.116 4.116 19 Cl -0.017 7.017 20 C -0.051 4.051 21 N -0.191 5.191 22 H 0.071 0.929 23 H 0.000 1.000 24 H 0.004 0.996 25 H 0.125 0.875 26 H 0.120 0.880 27 H 0.249 0.751 28 H 0.084 0.916 29 H 0.111 0.889 30 H 0.187 0.813 31 H 0.192 0.808 32 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 11.891 -24.793 1.902 27.562 hybrid contribution 0.543 0.335 0.509 0.816 sum 12.433 -24.458 2.411 27.542 Atomic orbital electron populations 1.70180 1.08283 1.27782 1.51512 1.26137 0.95732 1.03925 0.94690 0.85326 0.78696 0.77773 0.78473 1.19822 1.21160 1.17881 1.21721 0.93990 0.91650 1.50711 0.90653 1.18698 0.93727 0.92362 0.94851 1.21633 0.99344 0.89977 1.04872 1.21301 0.87794 0.86418 0.74052 1.90667 1.16493 1.88229 1.50990 1.45825 1.10774 1.04141 1.75958 1.20058 0.92146 0.79572 1.03498 1.21175 0.96363 0.96369 0.89395 1.22280 0.97407 0.95787 0.99790 1.21903 0.93833 0.94883 0.98072 1.22262 0.97699 0.95036 0.96635 1.98403 1.58472 1.46103 1.98709 1.23082 0.92689 0.90650 0.98654 1.67614 1.09397 1.12270 1.29804 0.92864 0.99970 0.99597 0.87494 0.88035 0.75067 0.91550 0.88949 0.81269 0.80767 0.80222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.65 13.29 21.45 0.28 -59.36 16 2 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 3 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 7 C -0.54 -30.95 9.11 25.60 0.23 -30.71 16 8 H 0.08 3.91 7.74 -2.91 -0.02 3.88 16 9 C 0.04 2.30 4.26 29.84 0.13 2.43 16 10 C -0.12 -4.73 5.64 29.84 0.17 -4.56 16 11 C 0.52 19.72 7.83 87.65 0.69 20.41 16 12 O -0.58 -28.30 15.98 -3.04 -0.05 -28.35 16 13 N -0.71 -19.26 5.55 -466.80 -2.59 -21.85 16 14 C 0.17 4.13 5.98 85.63 0.51 4.64 16 15 C 0.10 1.99 6.15 42.55 0.26 2.25 16 16 C -0.13 -1.75 9.72 22.36 0.22 -1.53 16 17 C -0.06 -0.67 9.98 22.49 0.22 -0.45 16 18 C -0.09 -1.16 6.34 22.41 0.14 -1.01 16 19 Cl -0.05 -0.54 28.99 -2.72 -0.08 -0.62 16 20 C 0.11 1.72 10.99 84.70 0.93 2.65 16 21 N -0.48 -10.05 10.27 -183.80 -1.89 -11.94 16 22 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 23 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 24 H -0.01 -0.90 8.10 -2.39 -0.02 -0.92 16 25 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 26 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 27 H 0.41 8.80 8.46 -92.70 -0.78 8.02 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.09 2.09 8.04 -2.39 -0.02 2.07 16 30 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 31 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 32 H 0.18 2.17 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -76.71 303.75 2.03 -74.69 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 0.36 Total: 6.90 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 3.97 Total: -5.86 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -4.19 Total: -93.16 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.05 Total: -28.35 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -76.71 2.03 -74.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292025514.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.213 kcal (2) G-P(sol) polarization free energy of solvation -76.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds