Wall clock time and date at job start Mon Mar 30 2020 07:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99939 * 2 1 4 4 H 1.48503 * 109.47259 * 239.99504 * 3 2 1 5 5 H 1.48504 * 109.47405 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47441 * 119.99539 * 3 2 1 7 7 C 1.37870 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00062 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47271 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47216 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.47087 * 180.02562 * 11 10 9 13 13 C 1.34774 * 119.99802 * 179.97438 * 12 11 10 14 14 O 1.21547 * 120.00290 * 359.97438 * 13 12 11 15 15 C 1.47854 * 119.99701 * 179.97438 * 13 12 11 16 16 C 1.39549 * 120.55274 * 0.02562 * 15 13 12 17 17 N 1.31664 * 120.59564 * 179.97438 * 16 15 13 18 18 C 1.31950 * 121.89042 * 0.02562 * 17 16 15 19 19 C 1.38427 * 121.06558 * 359.97438 * 18 17 16 20 20 Cl 1.73592 * 120.36071 * 180.02562 * 19 18 17 21 21 C 1.38513 * 119.27370 * 359.97438 * 19 18 17 22 22 H 0.97004 * 119.99962 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47073 * 59.99935 * 9 7 2 24 24 H 1.08992 * 109.47590 * 299.99920 * 9 7 2 25 25 H 1.08996 * 109.47161 * 59.99762 * 10 9 7 26 26 H 1.09000 * 109.46708 * 300.00222 * 10 9 7 27 27 H 1.08996 * 109.47675 * 59.99556 * 11 10 9 28 28 H 1.09000 * 109.47038 * 299.99499 * 11 10 9 29 29 H 0.96993 * 120.00007 * 359.97438 * 12 11 10 30 30 H 1.07996 * 119.70557 * 359.95484 * 16 15 13 31 31 H 1.08001 * 119.46351 * 179.97438 * 18 17 16 32 32 H 1.08004 * 120.85901 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9870 -0.0001 12 7 2.4323 -6.1006 0.0005 13 6 1.9831 -7.3712 0.0006 14 8 0.7881 -7.5933 0.0007 15 6 2.9439 -8.4950 0.0007 16 6 4.3183 -8.2532 0.0011 17 7 5.1746 -9.2533 0.0017 18 6 4.7770 -10.5115 0.0013 19 6 3.4312 -10.8353 0.0009 20 17 2.9285 -12.4969 0.0010 21 6 2.4900 -9.8191 0.0013 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6241 -2.5567 0.8902 25 1 2.8720 -3.6043 0.8905 26 1 2.8719 -3.6043 -0.8894 27 1 0.8539 -5.0446 -0.8902 28 1 0.8534 -5.0451 0.8897 29 1 3.3859 -5.9234 0.0008 30 1 4.6828 -7.2367 0.0007 31 1 5.5136 -11.3014 0.0014 32 1 1.4333 -10.0426 0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294769963.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:31 Heat of formation + Delta-G solvation = -24.600107 kcal Electronic energy + Delta-G solvation = -16735.271955 eV Core-core repulsion = 13721.118599 eV Total energy + Delta-G solvation = -3014.153356 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.97325 -39.17486 -37.10165 -35.62236 -33.51075 -32.95186 -32.00411 -30.87742 -27.05574 -24.95203 -24.07031 -22.93040 -20.99417 -20.38223 -18.35641 -17.34381 -16.98549 -16.37971 -15.65381 -15.60573 -15.35204 -14.71664 -14.48620 -13.82605 -13.82208 -13.59938 -13.05483 -12.50597 -12.32320 -11.92146 -11.83823 -11.69051 -10.91990 -10.81568 -10.70470 -10.53219 -10.28814 -9.93474 -9.90798 -9.50108 -9.46852 -9.18114 -8.96528 -8.40387 -6.05136 -4.08634 0.11382 0.54582 1.50211 2.58117 3.06334 3.30033 3.35108 3.36895 3.38367 3.80930 4.17877 4.31637 4.39569 4.43322 4.60752 4.85825 5.30709 5.36268 5.47017 5.61266 5.67643 5.85115 6.06271 6.27891 6.50765 6.70675 6.91969 7.23473 7.45036 7.58598 7.70499 7.92861 8.09231 8.33701 8.97752 9.55870 11.06086 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.053509 B = 0.002770 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.148836 B =10107.361753 C =10604.763970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.115 3.885 12 N -0.715 5.715 13 C 0.556 3.444 14 O -0.532 6.532 15 C -0.167 4.167 16 C 0.137 3.863 17 N -0.469 5.469 18 C 0.133 3.867 19 C -0.098 4.098 20 Cl -0.047 7.047 21 C -0.010 4.010 22 H 0.262 0.738 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.398 0.602 30 H 0.169 0.831 31 H 0.170 0.830 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.104 -22.317 0.002 24.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.160 4.160 11 C -0.007 4.007 12 N -0.366 5.366 13 C 0.341 3.659 14 O -0.410 6.410 15 C -0.173 4.173 16 C -0.021 4.021 17 N -0.177 5.177 18 C -0.025 4.025 19 C -0.127 4.127 20 Cl -0.018 7.018 21 C -0.037 4.037 22 H 0.072 0.928 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.233 0.767 30 H 0.186 0.814 31 H 0.188 0.812 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 8.916 -22.278 0.002 23.996 hybrid contribution -0.055 0.713 -0.001 0.715 sum 8.861 -21.565 0.002 23.314 Atomic orbital electron populations 1.69955 1.06072 1.26870 1.50369 1.25027 0.94864 0.99329 0.95209 0.86634 0.79559 0.83044 0.78611 1.20225 1.21261 1.20220 1.21155 0.92969 0.90917 1.51214 0.92654 1.19025 0.93815 0.90781 0.97722 1.21914 0.99865 0.93166 1.01058 1.21759 0.91747 0.84724 1.02441 1.46142 1.11099 1.05607 1.73755 1.17900 0.87778 0.82739 0.77482 1.90806 1.15847 1.84625 1.49700 1.21149 0.95330 0.94568 1.06226 1.23200 0.88297 0.99227 0.91370 1.67885 1.38134 0.99254 1.12455 1.23038 0.92535 0.94366 0.92544 1.22022 0.95402 0.87383 1.07902 1.98401 1.91355 1.15197 1.96861 1.21701 1.01334 0.89980 0.90667 0.92824 0.96226 0.96216 0.92551 0.92557 0.91298 0.91307 0.76662 0.81370 0.81246 0.82308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 8 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.25 5.27 -26.73 -0.14 -2.39 16 11 C 0.12 1.89 5.67 -4.04 -0.02 1.87 16 12 N -0.72 -9.34 5.51 -61.25 -0.34 -9.67 16 13 C 0.56 7.71 7.78 -12.33 -0.10 7.61 16 14 O -0.53 -9.35 16.42 5.32 0.09 -9.26 16 15 C -0.17 -1.83 5.89 -104.83 -0.62 -2.44 16 16 C 0.14 1.28 10.71 -17.13 -0.18 1.09 16 17 N -0.47 -4.51 10.34 -12.89 -0.13 -4.64 16 18 C 0.13 1.09 10.97 -17.43 -0.19 0.90 16 19 C -0.10 -0.85 6.34 -39.41 -0.25 -1.10 16 20 Cl -0.05 -0.37 28.98 -51.86 -1.50 -1.87 16 21 C -0.01 -0.10 9.52 -38.83 -0.37 -0.47 16 22 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 23 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.40 3.97 6.54 -40.82 -0.27 3.71 16 30 H 0.17 1.16 6.42 -52.49 -0.34 0.82 16 31 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.16 1.62 7.74 -52.48 -0.41 1.21 16 LS Contribution 300.75 15.07 4.53 4.53 Total: -1.00 -31.77 300.75 -7.57 -39.34 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -3.51 Total: -1.26 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -2.42 Total: -7.60 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.27 Total: -40.04 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.50 Total: -1.87 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.77 -7.57 -39.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294769963.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.739 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds