Wall clock time and date at job start Mon Mar 30 2020 07:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47411 * 2 1 4 4 H 1.09005 * 109.47169 * 54.99674 * 3 2 1 5 5 C 1.50699 * 109.47266 * 175.00097 * 3 2 1 6 6 H 1.08004 * 119.99868 * 119.99903 * 5 3 2 7 7 C 1.37872 * 120.00056 * 299.99858 * 5 3 2 8 8 N 1.31514 * 120.00089 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00006 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47065 * 90.00323 * 9 7 5 11 11 H 1.48505 * 109.47237 * 209.99848 * 9 7 5 12 12 H 1.48498 * 109.47212 * 330.00089 * 9 7 5 13 13 N 1.46499 * 109.46919 * 294.99921 * 3 2 1 14 14 C 1.34777 * 120.00141 * 84.99739 * 13 3 2 15 15 O 1.21561 * 119.99930 * 0.02562 * 14 13 3 16 16 C 1.47840 * 120.00543 * 179.97438 * 14 13 3 17 17 C 1.39563 * 120.54972 * 359.97438 * 16 14 13 18 18 N 1.31661 * 120.59233 * 179.72134 * 17 16 14 19 19 C 1.31942 * 121.89689 * 0.26459 * 18 17 16 20 20 C 1.38428 * 121.06409 * 359.97438 * 19 18 17 21 21 Cl 1.73600 * 120.36360 * 180.02562 * 20 19 18 22 22 C 1.38511 * 119.27230 * 0.02562 * 20 19 18 23 23 H 1.08998 * 109.47154 * 300.00135 * 1 2 3 24 24 H 1.09007 * 109.47254 * 59.99750 * 1 2 3 25 25 H 1.09001 * 109.47476 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47154 * 239.99865 * 2 1 3 27 27 H 1.09001 * 109.46857 * 120.00074 * 2 1 3 28 28 H 0.97000 * 120.00253 * 180.02562 * 8 7 5 29 29 H 0.96998 * 120.00130 * 264.99889 * 13 3 2 30 30 H 1.08002 * 119.70611 * 0.02562 * 17 16 14 31 31 H 1.08005 * 119.47029 * 180.02562 * 19 18 17 32 32 H 1.08007 * 120.85914 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3366 2.1728 9 14 6.0049 0.8799 1.3810 10 1 6.4428 2.1128 2.0835 11 1 6.4390 -0.3112 2.1545 12 1 6.6130 0.8393 0.0268 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6643 -1.3670 15 8 -0.3410 2.6326 -0.4321 16 6 0.0442 3.3258 -2.6301 17 6 0.9268 3.3704 -3.7103 18 7 0.5775 3.9545 -4.8373 19 6 -0.6043 4.5204 -4.9921 20 6 -1.5347 4.5234 -3.9671 21 17 -3.0845 5.2728 -4.1909 22 6 -1.2155 3.9217 -2.7610 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 3.8293 -0.0612 2.9498 29 1 2.2719 2.1231 -1.9978 30 1 1.9033 2.9174 -3.6225 31 1 -0.8501 4.9883 -5.9341 32 1 -1.9218 3.9094 -1.9440 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295053224.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:41 Heat of formation + Delta-G solvation = -15.663056 kcal Electronic energy + Delta-G solvation = -17823.054290 eV Core-core repulsion = 14809.288474 eV Total energy + Delta-G solvation = -3013.765816 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.59705 -38.74437 -36.85384 -35.23273 -32.78105 -32.52575 -31.59537 -30.48237 -27.14336 -24.68205 -23.73651 -22.94536 -20.73147 -19.56458 -18.25273 -17.02317 -16.81644 -16.01865 -15.29567 -15.16054 -14.92964 -14.33729 -14.11855 -13.43324 -13.20279 -12.84114 -12.63153 -12.32461 -12.09651 -11.60617 -11.46453 -11.31262 -11.03703 -10.90069 -10.40455 -10.27121 -10.05750 -9.93187 -9.68688 -9.22772 -9.16830 -9.12461 -8.56772 -7.98315 -6.18408 -4.28525 0.47838 0.86265 1.75721 3.05986 3.21609 3.28770 3.30097 3.77907 3.87169 4.13572 4.30489 4.48570 4.67985 4.89449 4.97885 5.13506 5.31870 5.70797 5.87269 6.17648 6.32816 6.38615 6.58269 6.96477 7.10954 7.23540 7.31079 7.53062 7.54445 7.63360 7.80883 8.09681 8.48090 8.66747 8.92106 9.38768 10.86909 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.033171 B = 0.004388 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.903544 B = 6379.629946 C = 6896.150516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.696 5.696 14 C 0.546 3.454 15 O -0.537 6.537 16 C -0.158 4.158 17 C 0.133 3.867 18 N -0.471 5.471 19 C 0.124 3.876 20 C -0.098 4.098 21 Cl -0.054 7.054 22 C -0.015 4.015 23 H 0.050 0.950 24 H 0.037 0.963 25 H 0.024 0.976 26 H 0.033 0.967 27 H 0.101 0.899 28 H 0.265 0.735 29 H 0.388 0.612 30 H 0.169 0.831 31 H 0.167 0.833 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.419 6.212 -12.268 15.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.070 0.930 5 C -0.576 4.576 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.343 5.343 14 C 0.329 3.671 15 O -0.416 6.416 16 C -0.164 4.164 17 C -0.025 4.025 18 N -0.180 5.180 19 C -0.033 4.033 20 C -0.127 4.127 21 Cl -0.025 7.025 22 C -0.042 4.042 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.051 0.949 27 H 0.119 0.881 28 H 0.075 0.925 29 H 0.222 0.778 30 H 0.186 0.814 31 H 0.184 0.816 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.461 6.134 -12.084 15.470 hybrid contribution 0.527 0.030 0.426 0.678 sum -6.935 6.163 -11.658 14.900 Atomic orbital electron populations 1.21851 0.98338 0.98230 1.01164 1.21948 0.92616 0.99602 1.02528 1.18889 0.94474 0.89273 0.80492 0.92974 1.21202 0.90473 1.39388 1.06507 0.91956 1.24873 0.98706 0.94644 0.95319 1.69885 1.35243 1.37380 1.09307 0.86440 0.84674 0.77694 0.78268 1.20533 1.21040 1.19778 1.46494 1.13931 1.55052 1.18866 1.17828 0.83398 0.79670 0.86176 1.90774 1.51405 1.59898 1.39492 1.21440 0.95415 1.02081 0.97419 1.23230 0.99244 0.92832 0.87191 1.67847 1.16862 1.08941 1.24302 1.22939 0.87848 0.94618 0.97932 1.22005 0.90177 1.03342 0.97171 1.98383 1.26536 1.80506 1.97085 1.21696 0.95801 0.90663 0.96015 0.93055 0.94437 0.95679 0.94855 0.88068 0.92463 0.77812 0.81359 0.81596 0.82484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.51 37.15 0.32 -2.67 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.47 2.24 -69.08 -0.15 6.32 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.59 8.73 -34.44 -0.30 -13.89 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -23.94 11.29 55.43 0.63 -23.31 16 9 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 13 N -0.70 -13.54 4.98 -55.88 -0.28 -13.81 16 14 C 0.55 10.27 6.35 -12.33 -0.08 10.20 16 15 O -0.54 -11.83 13.56 5.31 0.07 -11.76 16 16 C -0.16 -2.36 5.89 -104.83 -0.62 -2.98 16 17 C 0.13 1.74 10.71 -17.13 -0.18 1.56 16 18 N -0.47 -5.95 10.34 -12.88 -0.13 -6.08 16 19 C 0.12 1.36 10.97 -17.43 -0.19 1.17 16 20 C -0.10 -1.13 6.34 -39.41 -0.25 -1.38 16 21 Cl -0.05 -0.54 28.99 -51.86 -1.50 -2.04 16 22 C -0.01 -0.20 9.52 -38.83 -0.37 -0.57 16 23 H 0.05 1.18 7.84 -51.93 -0.41 0.77 16 24 H 0.04 0.78 5.65 -51.93 -0.29 0.49 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 28 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.39 6.42 6.61 -40.82 -0.27 6.15 16 30 H 0.17 1.89 6.42 -52.49 -0.34 1.55 16 31 H 0.17 1.32 8.06 -52.48 -0.42 0.90 16 32 H 0.16 2.14 7.74 -52.48 -0.41 1.74 16 LS Contribution 288.18 15.07 4.34 4.34 Total: -1.00 -28.49 288.18 -7.19 -35.68 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -3.22 Total: 5.70 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -2.07 Total: -3.71 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.21 Total: -43.20 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.07 Total: -11.76 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.49 -7.19 -35.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295053224.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.017 kcal (2) G-P(sol) polarization free energy of solvation -28.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds