Wall clock time and date at job start Mon Mar 30 2020 07:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47411 * 2 1 4 4 H 1.09005 * 109.47169 * 54.99674 * 3 2 1 5 5 C 1.50699 * 109.47266 * 175.00097 * 3 2 1 6 6 H 1.08004 * 119.99868 * 119.99903 * 5 3 2 7 7 C 1.37872 * 120.00056 * 299.99858 * 5 3 2 8 8 N 1.31514 * 120.00089 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00006 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47065 * 90.00323 * 9 7 5 11 11 H 1.48505 * 109.47237 * 209.99848 * 9 7 5 12 12 H 1.48498 * 109.47212 * 330.00089 * 9 7 5 13 13 N 1.46499 * 109.46919 * 294.99921 * 3 2 1 14 14 C 1.34777 * 120.00141 * 84.99739 * 13 3 2 15 15 O 1.21561 * 119.99930 * 0.02562 * 14 13 3 16 16 C 1.47840 * 120.00543 * 179.97438 * 14 13 3 17 17 C 1.39563 * 120.54972 * 359.97438 * 16 14 13 18 18 N 1.31661 * 120.59233 * 179.72134 * 17 16 14 19 19 C 1.31942 * 121.89689 * 0.26459 * 18 17 16 20 20 C 1.38428 * 121.06409 * 359.97438 * 19 18 17 21 21 Cl 1.73600 * 120.36360 * 180.02562 * 20 19 18 22 22 C 1.38511 * 119.27230 * 0.02562 * 20 19 18 23 23 H 1.08998 * 109.47154 * 300.00135 * 1 2 3 24 24 H 1.09007 * 109.47254 * 59.99750 * 1 2 3 25 25 H 1.09001 * 109.47476 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47154 * 239.99865 * 2 1 3 27 27 H 1.09001 * 109.46857 * 120.00074 * 2 1 3 28 28 H 0.97000 * 120.00253 * 180.02562 * 8 7 5 29 29 H 0.96998 * 120.00130 * 264.99889 * 13 3 2 30 30 H 1.08002 * 119.70611 * 0.02562 * 17 16 14 31 31 H 1.08005 * 119.47029 * 180.02562 * 19 18 17 32 32 H 1.08007 * 120.85914 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3366 2.1728 9 14 6.0049 0.8799 1.3810 10 1 6.4428 2.1128 2.0835 11 1 6.4390 -0.3112 2.1545 12 1 6.6130 0.8393 0.0268 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6643 -1.3670 15 8 -0.3410 2.6326 -0.4321 16 6 0.0442 3.3258 -2.6301 17 6 0.9268 3.3704 -3.7103 18 7 0.5775 3.9545 -4.8373 19 6 -0.6043 4.5204 -4.9921 20 6 -1.5347 4.5234 -3.9671 21 17 -3.0845 5.2728 -4.1909 22 6 -1.2155 3.9217 -2.7610 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 3.8293 -0.0612 2.9498 29 1 2.2719 2.1231 -1.9978 30 1 1.9033 2.9174 -3.6225 31 1 -0.8501 4.9883 -5.9341 32 1 -1.9218 3.9094 -1.9440 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295053224.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:34 Heat of formation + Delta-G solvation = -33.656189 kcal Electronic energy + Delta-G solvation = -17823.834531 eV Core-core repulsion = 14809.288474 eV Total energy + Delta-G solvation = -3014.546057 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.74428 -40.18649 -37.73298 -37.01036 -34.46623 -33.72876 -33.09269 -31.86856 -28.98435 -26.00357 -24.88426 -24.57876 -22.28612 -21.29431 -19.66170 -18.27147 -18.04268 -17.45152 -16.99817 -16.44587 -16.34213 -15.97582 -15.31704 -14.87943 -14.60369 -14.36225 -13.87742 -13.67591 -13.49465 -13.16887 -13.12012 -12.89133 -12.68557 -12.31969 -12.17139 -12.06658 -11.59978 -11.28529 -11.06362 -11.00644 -10.61246 -10.50128 -10.14846 -9.70119 -8.15369 -6.32589 -0.56363 -0.15648 0.85152 1.47057 1.47856 1.57898 1.81988 2.28490 2.50941 2.65209 3.14926 3.19072 3.54259 3.62547 3.75186 3.91822 4.23129 4.49843 4.56961 4.69083 4.75495 4.82372 5.06137 5.20171 5.26521 5.42433 5.51276 5.59948 5.78379 5.89197 6.16163 6.56268 6.73878 6.85973 7.30282 7.45762 8.89982 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.033171 B = 0.004388 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.903544 B = 6379.629946 C = 6896.150516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.003 0.997 5 C -0.549 4.549 6 H 0.075 0.925 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.693 5.693 14 C 0.547 3.453 15 O -0.576 6.576 16 C -0.176 4.176 17 C 0.143 3.857 18 N -0.479 5.479 19 C 0.140 3.860 20 C -0.096 4.096 21 Cl -0.037 7.037 22 C -0.018 4.018 23 H 0.027 0.973 24 H 0.042 0.958 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.074 0.926 28 H 0.265 0.735 29 H 0.404 0.596 30 H 0.185 0.815 31 H 0.202 0.798 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.967 6.894 -14.796 17.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.021 0.979 5 C -0.587 4.587 6 H 0.093 0.907 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.183 1.183 13 N -0.342 5.342 14 C 0.334 3.666 15 O -0.458 6.458 16 C -0.182 4.182 17 C -0.015 4.015 18 N -0.187 5.187 19 C -0.017 4.017 20 C -0.125 4.125 21 Cl -0.008 7.008 22 C -0.046 4.046 23 H 0.046 0.954 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.240 0.760 30 H 0.201 0.799 31 H 0.219 0.781 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.006 6.831 -14.659 17.625 hybrid contribution 0.270 -0.097 1.145 1.181 sum -6.736 6.734 -13.514 16.533 Atomic orbital electron populations 1.21693 0.97054 0.99249 1.00240 1.21800 0.93682 0.99024 1.01580 1.18458 0.93870 0.89253 0.80924 0.97887 1.21569 0.91235 1.39052 1.06846 0.90736 1.25724 1.03137 0.94328 0.95041 1.70038 1.37054 1.38274 1.09847 0.85399 0.79298 0.77315 0.78657 1.20573 1.21139 1.18322 1.46194 1.14827 1.55182 1.17977 1.18317 0.82442 0.78783 0.87099 1.90752 1.52397 1.61273 1.41350 1.21012 0.96820 1.04151 0.96168 1.23401 0.99351 0.92164 0.86606 1.67972 1.17647 1.09372 1.23696 1.23534 0.86752 0.92702 0.98745 1.21994 0.91118 1.02953 0.96426 1.98396 1.25385 1.80062 1.96939 1.21710 0.95259 0.90775 0.96811 0.95370 0.93918 0.93547 0.93789 0.90803 0.92596 0.75957 0.79867 0.78100 0.83244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 8.51 71.98 0.61 -4.86 16 2 C -0.12 -5.81 5.45 30.59 0.17 -5.64 16 3 C 0.28 13.69 2.24 44.25 0.10 13.79 16 4 H 0.00 0.19 7.58 -2.38 -0.02 0.17 16 5 C -0.55 -27.89 8.73 25.60 0.22 -27.67 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.94 5.29 84.65 0.45 1.39 16 8 N -0.91 -50.98 11.29 21.45 0.24 -50.74 16 9 Si 0.97 40.92 29.54 68.60 2.03 42.94 16 10 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.29 -12.02 7.11 99.48 0.71 -11.32 16 12 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 13 N -0.69 -27.09 4.98 -448.97 -2.23 -29.32 16 14 C 0.55 20.87 6.35 86.78 0.55 21.42 16 15 O -0.58 -26.35 13.56 -3.91 -0.05 -26.40 16 16 C -0.18 -5.11 5.89 -20.00 -0.12 -5.23 16 17 C 0.14 3.43 10.71 85.04 0.91 4.34 16 18 N -0.48 -10.64 10.34 -194.67 -2.01 -12.65 16 19 C 0.14 2.59 10.97 84.72 0.93 3.52 16 20 C -0.10 -1.99 6.34 22.38 0.14 -1.85 16 21 Cl -0.04 -0.65 28.99 -2.72 -0.08 -0.73 16 22 C -0.02 -0.48 9.52 22.75 0.22 -0.27 16 23 H 0.03 1.32 7.84 -2.39 -0.02 1.31 16 24 H 0.04 1.80 5.65 -2.38 -0.01 1.78 16 25 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.07 3.96 5.95 -2.39 -0.01 3.94 16 28 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 29 H 0.40 13.00 6.61 -92.71 -0.61 12.38 16 30 H 0.18 3.70 6.42 -2.91 -0.02 3.69 16 31 H 0.20 2.26 8.06 -2.91 -0.02 2.24 16 32 H 0.15 4.10 7.74 -2.91 -0.02 4.08 16 Total: -1.00 -62.48 288.18 2.62 -59.86 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.55 Total: 18.09 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 4.18 Total: -1.06 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -4.01 Total: -92.71 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.05 Total: -26.40 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.94 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -62.48 2.62 -59.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295053224.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.202 kcal (2) G-P(sol) polarization free energy of solvation -62.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds