Wall clock time and date at job start Mon Mar 30 2020 07:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47291 * 2 1 4 4 C 1.50699 * 109.46828 * 239.99893 * 2 1 3 5 5 H 1.07999 * 120.00066 * 239.99997 * 4 2 1 6 6 C 1.37875 * 119.99815 * 60.00509 * 4 2 1 7 7 N 1.31515 * 120.00520 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00104 * 179.97438 * 6 4 2 9 9 H 1.48510 * 109.46955 * 59.99765 * 8 6 4 10 10 H 1.48504 * 109.47366 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47264 * 300.00128 * 8 6 4 12 12 N 1.46498 * 109.47045 * 120.00289 * 2 1 3 13 13 C 1.46506 * 120.00206 * 59.99767 * 12 2 1 14 14 C 1.34779 * 119.99922 * 239.99827 * 12 2 1 15 15 O 1.21553 * 119.99797 * 4.84365 * 14 12 2 16 16 C 1.47836 * 120.00091 * 184.84169 * 14 12 2 17 17 C 1.39557 * 120.55474 * 321.35652 * 16 14 12 18 18 N 1.31665 * 120.59798 * 179.72468 * 17 16 14 19 19 C 1.31940 * 121.89127 * 0.27099 * 18 17 16 20 20 C 1.38423 * 121.06664 * 359.97438 * 19 18 17 21 21 Cl 1.73607 * 120.36421 * 179.97438 * 20 19 18 22 22 C 1.38508 * 119.27829 * 0.02562 * 20 19 18 23 23 H 1.09000 * 109.47175 * 59.99647 * 1 2 3 24 24 H 1.08998 * 109.47291 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46916 * 300.00012 * 1 2 3 26 26 H 0.96999 * 120.00929 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.46892 * 265.16367 * 13 12 2 28 28 H 1.08995 * 109.46952 * 25.16455 * 13 12 2 29 29 H 1.08998 * 109.46916 * 145.16091 * 13 12 2 30 30 H 1.08004 * 119.70336 * 359.97438 * 17 16 14 31 31 H 1.08010 * 119.46443 * 180.02562 * 19 18 17 32 32 H 1.08002 * 120.86700 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8268 -0.4198 -5.2205 11 1 3.8074 -1.1191 -4.0078 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0933 1.4280 14 6 2.7932 -0.0357 2.0833 15 8 3.0145 1.1506 1.9375 16 6 3.3740 -0.7601 3.2338 17 6 2.6352 -1.7363 3.9037 18 7 3.1536 -2.3857 4.9250 19 6 4.3759 -2.1422 5.3582 20 6 5.1715 -1.1858 4.7512 21 17 6.7769 -0.8797 5.3366 22 6 4.6723 -0.4748 3.6725 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7082 1.1610 -3.4844 27 1 0.7859 -2.1448 2.0713 28 1 1.4456 -2.5751 0.4750 29 1 2.4982 -2.6035 1.9101 30 1 1.6307 -1.9640 3.5790 31 1 4.7622 -2.6988 6.1994 32 1 5.2706 0.2775 3.1800 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295257541.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:12 Heat of formation + Delta-G solvation = -15.797470 kcal Electronic energy + Delta-G solvation = -18002.532954 eV Core-core repulsion = 14988.761310 eV Total energy + Delta-G solvation = -3013.771645 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.87771 -40.16905 -37.74246 -37.28953 -34.99218 -33.69694 -32.68763 -30.87917 -27.94656 -27.31023 -25.86769 -24.69050 -22.99080 -20.66141 -18.79441 -18.37448 -18.22762 -17.67793 -17.26064 -16.55188 -16.01223 -15.83245 -15.26557 -14.85926 -14.45961 -14.37348 -14.12465 -13.71090 -13.52736 -13.19707 -12.99233 -12.78583 -12.73370 -12.64252 -12.29683 -12.20316 -12.13710 -11.34666 -11.21518 -11.02829 -10.62515 -10.49357 -10.07467 -9.45109 -8.15727 -6.32519 -0.50294 -0.17013 0.83442 1.42739 1.44526 1.51881 1.67655 2.14065 2.43729 2.53042 3.12856 3.19746 3.44106 3.54114 3.61260 3.94323 4.15818 4.34815 4.59399 4.67389 4.74305 4.80128 4.90630 4.97747 5.04415 5.21126 5.45270 5.52949 5.64092 5.99714 6.13376 6.56078 6.64969 6.73710 7.15578 7.39970 8.88619 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.027899 B = 0.004735 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.378600 B = 5912.397314 C = 6200.419594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.262 3.738 3 H 0.012 0.988 4 C -0.542 4.542 5 H 0.062 0.938 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.964 3.036 9 H -0.262 1.262 10 H -0.284 1.284 11 H -0.278 1.278 12 N -0.586 5.586 13 C 0.070 3.930 14 C 0.544 3.456 15 O -0.593 6.593 16 C -0.172 4.172 17 C 0.137 3.863 18 N -0.474 5.474 19 C 0.139 3.861 20 C -0.093 4.093 21 Cl -0.037 7.037 22 C -0.026 4.026 23 H 0.069 0.931 24 H 0.051 0.949 25 H 0.022 0.978 26 H 0.265 0.735 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.192 0.808 31 H 0.204 0.796 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.610 -9.343 14.691 18.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.160 3.840 3 H 0.030 0.970 4 C -0.580 4.580 5 H 0.080 0.920 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.789 3.211 9 H -0.186 1.186 10 H -0.210 1.210 11 H -0.204 1.204 12 N -0.315 5.315 13 C -0.072 4.072 14 C 0.332 3.668 15 O -0.475 6.475 16 C -0.177 4.177 17 C -0.020 4.020 18 N -0.182 5.182 19 C -0.019 4.019 20 C -0.122 4.122 21 Cl -0.008 7.008 22 C -0.053 4.053 23 H 0.087 0.913 24 H 0.070 0.930 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.208 0.792 31 H 0.221 0.779 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.238 -9.250 14.910 18.311 hybrid contribution 0.923 0.923 -1.582 2.051 sum 6.161 -8.327 13.327 16.879 Atomic orbital electron populations 1.21882 0.96607 1.00479 1.00178 1.18646 0.92041 0.92263 0.81037 0.97005 1.21515 1.32238 1.13265 0.90973 0.91956 1.25697 0.94975 0.95576 1.01923 1.70006 1.37032 1.23751 1.24593 0.85525 0.78333 0.79062 0.78185 1.18613 1.20962 1.20408 1.48172 1.47912 1.13374 1.22007 1.22242 1.00903 0.80461 1.03575 1.18532 0.79146 0.86374 0.82772 1.90728 1.62791 1.17193 1.76788 1.20890 0.96621 1.01063 0.99157 1.23765 1.00801 0.88220 0.89230 1.68032 1.12402 1.25448 1.12362 1.23537 0.88156 0.92301 0.97864 1.21952 0.90284 1.01385 0.98619 1.98394 1.19961 1.95155 1.87296 1.21632 0.93875 0.96372 0.93409 0.91279 0.93025 0.95884 0.92551 0.89889 0.90228 0.90257 0.79165 0.77941 0.83902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.20 8.97 71.98 0.65 -5.55 16 2 C 0.26 13.29 2.63 44.25 0.12 13.41 16 3 H 0.01 0.73 6.91 -2.39 -0.02 0.71 16 4 C -0.54 -28.66 7.96 25.60 0.20 -28.45 16 5 H 0.06 3.19 7.42 -2.91 -0.02 3.17 16 6 C 0.02 0.98 5.30 84.65 0.45 1.43 16 7 N -0.92 -51.75 11.32 21.45 0.24 -51.51 16 8 Si 0.96 42.12 29.54 68.60 2.03 44.15 16 9 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 12 N -0.59 -24.12 2.75 -830.22 -2.29 -26.41 16 13 C 0.07 2.09 7.82 127.77 1.00 3.09 16 14 C 0.54 22.58 7.38 86.78 0.64 23.22 16 15 O -0.59 -30.17 16.26 -3.88 -0.06 -30.23 16 16 C -0.17 -5.33 5.26 -20.00 -0.11 -5.44 16 17 C 0.14 3.38 8.75 85.04 0.74 4.12 16 18 N -0.47 -10.50 10.34 -194.67 -2.01 -12.52 16 19 C 0.14 2.61 10.97 84.72 0.93 3.54 16 20 C -0.09 -2.03 6.34 22.38 0.14 -1.89 16 21 Cl -0.04 -0.69 28.99 -2.72 -0.08 -0.77 16 22 C -0.03 -0.72 9.59 22.76 0.22 -0.51 16 23 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 24 H 0.05 2.14 7.67 -2.39 -0.02 2.13 16 25 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 27 H 0.08 1.93 6.88 -2.39 -0.02 1.92 16 28 H 0.08 2.54 7.10 -2.39 -0.02 2.53 16 29 H 0.08 2.01 5.83 -2.39 -0.01 1.99 16 30 H 0.19 4.01 5.26 -2.91 -0.02 4.00 16 31 H 0.20 2.28 8.06 -2.91 -0.02 2.26 16 32 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -66.40 287.19 3.96 -62.44 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 1.15 Total: 7.87 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 4.98 Total: 6.97 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -4.06 Total: -90.43 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.06 Total: -30.23 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -66.40 3.96 -62.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295257541.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.642 kcal (2) G-P(sol) polarization free energy of solvation -66.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds