Wall clock time and date at job start Mon Mar 30 2020 07:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47243 * 2 1 4 4 C 1.50699 * 109.47018 * 119.99834 * 2 1 3 5 5 H 1.08003 * 120.00415 * 119.99685 * 4 2 1 6 6 C 1.37887 * 119.99998 * 300.00048 * 4 2 1 7 7 N 1.31513 * 119.99845 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99554 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47169 * 90.00453 * 8 6 4 10 10 H 1.48502 * 109.47091 * 210.00016 * 8 6 4 11 11 H 1.48498 * 109.47431 * 330.00090 * 8 6 4 12 12 N 1.46502 * 109.47238 * 239.99794 * 2 1 3 13 13 C 1.46497 * 119.99922 * 299.99849 * 12 2 1 14 14 C 1.34777 * 119.99903 * 120.00416 * 12 2 1 15 15 O 1.21549 * 119.99787 * 7.09854 * 14 12 2 16 16 C 1.47849 * 119.99494 * 187.09803 * 14 12 2 17 17 C 1.39556 * 120.55547 * 19.98345 * 16 14 12 18 18 N 1.31665 * 120.59554 * 179.73174 * 17 16 14 19 19 C 1.31943 * 121.89038 * 0.57470 * 18 17 16 20 20 C 1.38431 * 121.06603 * 359.68201 * 19 18 17 21 21 Cl 1.73595 * 120.36432 * 179.97438 * 20 19 18 22 22 C 1.38516 * 119.27400 * 0.02680 * 20 19 18 23 23 H 1.08997 * 109.47243 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47088 * 300.00554 * 1 2 3 25 25 H 1.09005 * 109.46596 * 60.00335 * 1 2 3 26 26 H 0.97004 * 119.99541 * 180.02562 * 7 6 4 27 27 H 1.09009 * 109.47247 * 85.87850 * 13 12 2 28 28 H 1.09006 * 109.47477 * 325.88601 * 13 12 2 29 29 H 1.08993 * 109.47396 * 205.88211 * 13 12 2 30 30 H 1.08000 * 119.70284 * 0.02562 * 17 16 14 31 31 H 1.08003 * 119.47006 * 179.70923 * 19 18 17 32 32 H 1.07997 * 120.85850 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 2.1371 -0.8595 3.5566 8 14 0.6258 1.2800 2.6540 9 1 -0.8021 0.8747 2.6992 10 1 0.9771 1.9956 3.9069 11 1 0.8491 2.1774 1.4921 12 7 2.0183 -0.6907 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7933 -0.0357 -2.0833 15 8 3.1936 1.0838 -1.8304 16 6 3.1564 -0.6790 -3.3640 17 6 2.4055 -1.7456 -3.8602 18 7 2.7250 -2.3156 -5.0032 19 6 3.7618 -1.9168 -5.7152 20 6 4.5601 -0.8690 -5.2896 21 17 5.9202 -0.3597 -6.2405 22 6 4.2624 -0.2321 -4.0962 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.9024 -0.5282 4.4376 27 1 0.7010 -2.1459 -1.9351 28 1 1.6011 -2.6147 -0.4727 29 1 2.4277 -2.5628 -2.0483 30 1 1.5518 -2.1035 -3.3039 31 1 3.9911 -2.4157 -6.6453 32 1 4.8677 0.5884 -3.7401 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295257544.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:17 Heat of formation + Delta-G solvation = 25.011044 kcal Electronic energy + Delta-G solvation = -18059.865104 eV Core-core repulsion = 15047.863049 eV Total energy + Delta-G solvation = -3012.002055 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.81640 -38.86654 -36.86330 -35.82910 -33.27438 -32.55978 -31.61766 -29.95211 -26.89009 -25.30488 -24.68225 -23.60862 -21.51140 -19.18538 -17.66290 -17.23820 -16.79389 -16.44556 -15.81192 -15.13218 -14.69545 -14.63186 -13.92416 -13.41836 -13.35795 -13.08499 -12.91846 -12.51723 -12.34210 -12.25643 -11.90087 -11.54019 -11.28295 -11.14875 -10.81354 -10.28154 -10.05852 -9.95860 -9.71214 -9.46308 -9.26751 -9.09654 -8.70385 -7.94261 -6.21337 -4.23074 0.46746 0.84410 1.75062 2.98036 3.18499 3.32703 3.33770 3.46540 3.71350 4.15517 4.28898 4.47101 4.57479 4.66113 4.96805 5.09951 5.14949 5.44859 5.62827 5.64862 5.80142 6.11093 6.15905 6.18687 6.23685 6.36773 6.71599 6.97866 7.16941 7.51558 7.53815 7.96174 8.33653 8.61017 8.79102 9.38503 10.91139 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.035956 B = 0.004672 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.551282 B = 5991.550251 C = 6258.194987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.230 3.770 3 H 0.065 0.935 4 C -0.531 4.531 5 H 0.080 0.920 6 C 0.077 3.923 7 N -0.892 5.892 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.576 5.576 13 C 0.063 3.937 14 C 0.551 3.449 15 O -0.538 6.538 16 C -0.160 4.160 17 C 0.112 3.888 18 N -0.473 5.473 19 C 0.126 3.874 20 C -0.100 4.100 21 Cl -0.053 7.053 22 C -0.013 4.013 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.034 0.966 26 H 0.267 0.733 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.193 0.807 31 H 0.167 0.833 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.102 -2.587 -17.251 17.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.128 3.872 3 H 0.082 0.918 4 C -0.569 4.569 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.529 5.529 8 Si 0.713 3.287 9 H -0.203 1.203 10 H -0.220 1.220 11 H -0.188 1.188 12 N -0.305 5.305 13 C -0.080 4.080 14 C 0.337 3.663 15 O -0.417 6.417 16 C -0.166 4.166 17 C -0.045 4.045 18 N -0.182 5.182 19 C -0.032 4.032 20 C -0.129 4.129 21 Cl -0.025 7.025 22 C -0.040 4.040 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.209 0.791 31 H 0.184 0.816 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.907 -2.652 -17.258 17.484 hybrid contribution 0.097 1.398 0.503 1.490 sum 1.004 -1.254 -16.755 16.832 Atomic orbital electron populations 1.22467 0.98700 1.01354 0.99478 1.19374 0.90103 0.95204 0.82486 0.91758 1.21111 1.33025 1.14415 0.88375 0.90189 1.24857 0.95600 0.96562 0.95580 1.69869 1.44926 1.40107 0.98030 0.86918 0.80424 0.83769 0.77599 1.20295 1.22041 1.18823 1.47775 1.48495 1.11577 1.22698 1.22299 0.98727 0.83116 1.03862 1.17894 0.79614 0.85849 0.82901 1.90757 1.53736 1.19608 1.77607 1.21247 0.98024 0.99150 0.98140 1.24442 0.98965 0.90058 0.91040 1.67972 1.15351 1.28544 1.06284 1.22982 0.89307 0.91896 0.99028 1.21976 0.94523 1.00553 0.95815 1.98383 1.42693 1.90403 1.71002 1.21675 0.94495 0.97144 0.90712 0.92341 0.92918 0.94702 0.92319 0.92466 0.88884 0.91248 0.79112 0.81609 0.82640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 8.67 37.16 0.32 -2.97 16 2 C 0.23 5.30 2.22 -69.08 -0.15 5.14 16 3 H 0.06 1.65 5.98 -51.93 -0.31 1.34 16 4 C -0.53 -14.16 8.60 -34.44 -0.30 -14.46 16 5 H 0.08 2.29 7.51 -52.48 -0.39 1.90 16 6 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 7 N -0.89 -26.24 13.96 55.43 0.77 -25.46 16 8 Si 0.88 21.20 24.37 -169.99 -4.14 17.05 16 9 H -0.28 -6.31 6.87 56.52 0.39 -5.92 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 11 H -0.26 -6.23 6.53 56.52 0.37 -5.86 16 12 N -0.58 -11.20 2.75 -176.38 -0.49 -11.69 16 13 C 0.06 0.94 7.68 59.85 0.46 1.40 16 14 C 0.55 10.68 7.54 -12.33 -0.09 10.58 16 15 O -0.54 -12.35 15.95 5.32 0.08 -12.27 16 16 C -0.16 -2.43 5.58 -104.83 -0.59 -3.02 16 17 C 0.11 1.45 8.80 -17.13 -0.15 1.30 16 18 N -0.47 -5.86 10.34 -12.88 -0.13 -5.99 16 19 C 0.13 1.36 10.97 -17.43 -0.19 1.17 16 20 C -0.10 -1.16 6.34 -39.41 -0.25 -1.41 16 21 Cl -0.05 -0.54 28.98 -51.86 -1.50 -2.05 16 22 C -0.01 -0.18 9.52 -38.83 -0.37 -0.55 16 23 H 0.06 1.09 7.67 -51.93 -0.40 0.69 16 24 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.06 0.68 7.05 -51.92 -0.37 0.32 16 28 H 0.09 1.54 6.97 -51.93 -0.36 1.18 16 29 H 0.07 0.90 5.21 -51.93 -0.27 0.63 16 30 H 0.19 2.18 4.05 -52.49 -0.21 1.97 16 31 H 0.17 1.30 8.06 -52.48 -0.42 0.88 16 32 H 0.16 2.16 7.86 -52.49 -0.41 1.74 16 LS Contribution 278.33 15.07 4.19 4.19 Total: -1.00 -31.07 278.33 -5.54 -36.61 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -2.92 Total: 0.36 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -1.40 Total: -0.77 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.15 Total: -43.15 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.08 Total: -12.27 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.14 Total: 17.05 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.07 -5.54 -36.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295257544.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.625 kcal (2) G-P(sol) polarization free energy of solvation -31.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds