Wall clock time and date at job start Mon Mar 30 2020 07:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46507 * 109.46833 * 2 1 4 4 C 1.46499 * 120.00129 * 278.18394 * 3 2 1 5 5 C 1.50708 * 109.46759 * 270.00018 * 4 3 2 6 6 H 1.07995 * 120.00000 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99732 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99945 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00186 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47142 * 89.99982 * 9 7 5 11 11 H 1.48497 * 109.47294 * 209.99874 * 9 7 5 12 12 H 1.48502 * 109.47010 * 330.00046 * 9 7 5 13 13 C 1.34775 * 119.99437 * 98.18193 * 3 2 1 14 14 O 1.21551 * 119.99537 * 186.15140 * 13 3 2 15 15 C 1.47842 * 120.00330 * 6.15482 * 13 3 2 16 16 C 1.39560 * 120.55416 * 330.77603 * 15 13 3 17 17 N 1.31656 * 120.59789 * 180.02562 * 16 15 13 18 18 C 1.31947 * 121.89549 * 0.02562 * 17 16 15 19 19 C 1.38434 * 121.06002 * 359.97438 * 18 17 16 20 20 Cl 1.73602 * 120.35992 * 179.97438 * 19 18 17 21 21 C 1.38512 * 119.27512 * 0.02562 * 19 18 17 22 22 H 1.08999 * 109.46732 * 59.99321 * 1 2 3 23 23 H 1.08997 * 109.46947 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47000 * 299.99669 * 1 2 3 25 25 H 1.09004 * 109.46687 * 240.00389 * 2 1 3 26 26 H 1.08992 * 109.46981 * 120.00387 * 2 1 3 27 27 H 1.08994 * 109.47390 * 29.99686 * 4 3 2 28 28 H 1.08997 * 109.46841 * 150.00386 * 4 3 2 29 29 H 0.97003 * 119.99739 * 180.02562 * 8 7 5 30 30 H 1.07999 * 119.70282 * 0.05005 * 16 15 13 31 31 H 1.08001 * 119.47246 * 180.02562 * 18 17 16 32 32 H 1.08008 * 120.85829 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.0923 2.1321 -1.2558 5 6 3.4436 1.9208 -1.8886 6 1 4.1741 1.2900 -1.4040 7 6 3.7473 2.5328 -3.0861 8 7 4.9264 2.3480 -3.6387 9 14 2.4835 3.6234 -3.9246 10 1 2.6463 5.0223 -3.4534 11 1 2.6818 3.5703 -5.3954 12 1 1.1178 3.1446 -3.5916 13 6 2.3996 1.9612 1.1554 14 8 2.6981 3.1393 1.1744 15 6 2.4547 1.1644 2.3995 16 6 1.6029 0.0741 2.5820 17 7 1.6509 -0.6358 3.6898 18 6 2.4945 -0.3518 4.6637 19 6 3.3725 0.7135 4.5603 20 17 4.4744 1.0712 5.8532 21 6 3.3614 1.4915 3.4144 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.3145 1.7823 -1.9346 28 1 1.9477 3.1934 -1.0536 29 1 5.1401 2.7790 -4.4810 30 1 0.8981 -0.1900 1.8074 31 1 2.5008 -0.9608 5.5557 32 1 4.0349 2.3290 3.3068 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307953337.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:48 Heat of formation + Delta-G solvation = 3.064285 kcal Electronic energy + Delta-G solvation = -18046.582726 eV Core-core repulsion = 15033.628988 eV Total energy + Delta-G solvation = -3012.953738 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.08931 -40.16355 -37.81052 -37.37413 -35.02544 -33.72418 -32.95418 -31.59355 -29.77352 -26.10811 -25.03063 -24.34981 -23.77260 -20.75074 -19.14632 -18.86807 -18.44695 -17.88188 -16.98175 -16.58612 -16.13913 -16.00037 -15.27988 -15.01594 -14.83518 -14.47313 -14.33425 -13.79206 -13.55847 -13.23781 -13.19367 -13.16455 -12.57580 -12.43499 -12.30815 -12.08219 -11.99177 -11.76604 -11.32335 -11.06609 -10.84563 -10.64342 -10.06817 -9.57077 -8.35650 -6.42012 -0.57574 -0.21754 0.81133 1.33449 1.37619 1.45741 1.65335 2.06115 2.30274 2.50927 2.98594 3.14722 3.35151 3.50820 3.56142 3.87699 3.93476 4.16293 4.23935 4.50105 4.61258 4.68608 4.76356 4.88250 4.91451 4.94831 5.16101 5.35820 5.42160 5.49936 6.18769 6.47293 6.51714 6.59644 7.07806 7.24718 8.81136 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.026099 B = 0.005190 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.574751 B = 5393.414723 C = 6033.931598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.065 3.935 3 N -0.585 5.585 4 C 0.224 3.776 5 C -0.541 4.541 6 H 0.028 0.972 7 C 0.014 3.986 8 N -0.944 5.944 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.275 1.275 12 H -0.234 1.234 13 C 0.548 3.452 14 O -0.582 6.582 15 C -0.179 4.179 16 C 0.111 3.889 17 N -0.472 5.472 18 C 0.140 3.860 19 C -0.095 4.095 20 Cl -0.036 7.036 21 C -0.025 4.025 22 H 0.063 0.937 23 H 0.108 0.892 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.108 0.892 27 H 0.059 0.941 28 H 0.024 0.976 29 H 0.269 0.731 30 H 0.215 0.785 31 H 0.206 0.794 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.796 -8.120 15.760 20.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.056 4.056 3 N -0.314 5.314 4 C 0.102 3.898 5 C -0.580 4.580 6 H 0.047 0.953 7 C -0.185 4.185 8 N -0.584 5.584 9 Si 0.769 3.231 10 H -0.202 1.202 11 H -0.200 1.200 12 H -0.157 1.157 13 C 0.336 3.664 14 O -0.464 6.464 15 C -0.185 4.185 16 C -0.045 4.045 17 N -0.180 5.180 18 C -0.017 4.017 19 C -0.124 4.124 20 Cl -0.007 7.007 21 C -0.052 4.052 22 H 0.082 0.918 23 H 0.127 0.873 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.125 0.875 27 H 0.077 0.923 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.231 0.769 31 H 0.223 0.777 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.023 -8.170 15.786 20.406 hybrid contribution 1.191 1.617 -0.804 2.164 sum -8.831 -6.553 14.981 18.584 Atomic orbital electron populations 1.22302 0.92916 1.04970 1.03008 1.22624 0.96432 0.81537 1.05021 1.47903 1.61765 1.15051 1.06704 1.19421 0.96062 0.92530 0.81743 1.21529 0.99834 1.30252 1.06352 0.95338 1.25836 0.97584 0.97445 0.97593 1.70049 1.23282 1.45426 1.19629 0.85727 0.80601 0.78980 0.77744 1.20217 1.20042 1.15684 1.18450 0.77344 0.86634 0.83993 1.90723 1.51283 1.17788 1.86574 1.20944 1.01803 1.00039 0.95705 1.24678 0.96356 0.88020 0.95401 1.68097 1.20780 1.28448 1.00707 1.23606 0.87539 0.92230 0.98350 1.21978 0.98451 0.99923 0.92010 1.98394 1.61077 1.94387 1.46851 1.21663 0.95620 0.97538 0.90406 0.91780 0.87347 0.91448 0.90054 0.87497 0.92322 0.95760 0.92188 0.76946 0.77720 0.84016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.53 9.13 71.99 0.66 -2.87 16 2 C 0.07 1.86 5.58 86.38 0.48 2.34 16 3 N -0.59 -23.39 2.46 -829.55 -2.04 -25.44 16 4 C 0.22 10.63 4.29 85.64 0.37 11.00 16 5 C -0.54 -31.38 9.94 25.60 0.25 -31.12 16 6 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 7 C 0.01 0.80 5.47 84.65 0.46 1.26 16 8 N -0.94 -59.13 13.96 21.45 0.30 -58.83 16 9 Si 0.95 43.47 27.47 68.60 1.88 45.35 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.23 -9.47 6.54 99.48 0.65 -8.82 16 13 C 0.55 22.76 7.48 86.79 0.65 23.41 16 14 O -0.58 -29.35 16.31 -3.88 -0.06 -29.41 16 15 C -0.18 -5.73 5.60 -20.00 -0.11 -5.84 16 16 C 0.11 2.77 8.68 85.04 0.74 3.51 16 17 N -0.47 -10.47 10.34 -194.71 -2.01 -12.49 16 18 C 0.14 2.70 10.97 84.72 0.93 3.63 16 19 C -0.09 -2.15 6.34 22.38 0.14 -2.01 16 20 Cl -0.04 -0.71 28.99 -2.72 -0.08 -0.78 16 21 C -0.03 -0.74 9.53 22.75 0.22 -0.53 16 22 H 0.06 1.42 7.95 -2.39 -0.02 1.41 16 23 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.07 1.28 7.07 -2.39 -0.02 1.26 16 25 H 0.08 2.46 8.13 -2.38 -0.02 2.44 16 26 H 0.11 2.66 4.04 -2.42 -0.01 2.65 16 27 H 0.06 2.50 6.94 -2.39 -0.02 2.48 16 28 H 0.02 1.24 6.77 -2.39 -0.02 1.22 16 29 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 30 H 0.21 4.49 2.52 -2.91 -0.01 4.49 16 31 H 0.21 2.33 8.06 -2.91 -0.02 2.31 16 32 H 0.14 4.48 7.98 -2.91 -0.02 4.46 16 Total: -1.00 -74.22 287.26 3.87 -70.35 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 1.10 Total: 8.46 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 4.79 Total: 2.78 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -3.76 Total: -96.75 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.06 Total: -29.41 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.88 Total: 45.35 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.78 kcal Total: -74.22 3.87 -70.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307953337.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.413 kcal (2) G-P(sol) polarization free energy of solvation -74.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds