Wall clock time and date at job start Mon Mar 30 2020 07:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21270 * 119.99762 * 2 1 4 4 C 1.47095 * 120.00512 * 179.97438 * 2 1 3 5 5 C 1.40369 * 120.56784 * 353.93870 * 4 2 1 6 6 C 1.38174 * 118.28093 * 180.02562 * 5 4 2 7 7 C 1.50698 * 120.34010 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47272 * 220.00350 * 7 6 5 9 9 N 1.46902 * 109.47030 * 340.00099 * 7 6 5 10 10 C 1.50702 * 109.47053 * 100.00408 * 7 6 5 11 11 H 1.07995 * 119.99700 * 359.97438 * 10 7 6 12 12 C 1.37875 * 119.99741 * 180.02562 * 10 7 6 13 13 N 1.31519 * 119.99470 * 179.97438 * 12 10 7 14 14 Si 1.86797 * 120.00401 * 359.97438 * 12 10 7 15 15 H 1.48494 * 109.47246 * 90.00109 * 14 12 10 16 16 H 1.48493 * 109.47321 * 210.00806 * 14 12 10 17 17 H 1.48508 * 109.46871 * 330.00582 * 14 12 10 18 18 C 1.38611 * 119.32234 * 359.97438 * 6 5 4 19 19 Cl 1.73601 * 119.44536 * 180.02562 * 18 6 5 20 20 N 1.32077 * 121.10574 * 0.02562 * 18 6 5 21 21 C 1.31632 * 121.89169 * 0.02562 * 20 18 6 22 22 C 1.50697 * 119.73016 * 179.97438 * 21 20 18 23 23 H 1.09007 * 109.46581 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47131 * 300.00330 * 1 2 3 25 25 H 1.08997 * 109.47514 * 60.00765 * 1 2 3 26 26 H 1.08003 * 120.85556 * 359.74880 * 5 4 2 27 27 H 1.00908 * 110.99537 * 60.00047 * 9 7 6 28 28 H 1.00896 * 110.99843 * 183.94756 * 9 7 6 29 29 H 0.97005 * 119.99289 * 179.97438 * 13 12 10 30 30 H 1.08997 * 109.47382 * 263.32010 * 22 21 20 31 31 H 1.09006 * 109.47413 * 23.32574 * 22 21 20 32 32 H 1.09002 * 109.47394 * 143.31919 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 6 2.2426 -1.2738 0.0006 5 6 1.5587 -2.4930 0.1287 6 6 2.2967 -3.6611 0.1240 7 6 1.6100 -4.9959 0.2580 8 1 2.2014 -5.6456 0.9032 9 7 0.2774 -4.8041 0.8456 10 6 1.4728 -5.6291 -1.1026 11 1 1.8452 -5.1161 -1.9769 12 6 0.8710 -6.8628 -1.2312 13 7 0.7508 -7.4152 -2.4187 14 14 0.2262 -7.7498 0.2810 15 1 -1.1874 -7.3615 0.5175 16 1 0.3074 -9.2170 0.0666 17 1 1.0463 -7.3760 1.4613 18 6 3.6750 -3.5928 -0.0064 19 17 4.6052 -5.0586 -0.0135 20 7 4.2924 -2.4313 -0.1254 21 6 3.6348 -1.2910 -0.1255 22 6 4.3888 0.0064 -0.2638 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 0.4840 -2.5170 0.2329 27 1 -0.2906 -4.2048 0.2656 28 1 -0.1782 -5.6900 1.0054 29 1 0.3277 -8.2834 -2.5091 30 1 4.5610 0.4337 0.7240 31 1 5.3459 -0.1796 -0.7512 32 1 3.8048 0.7038 -0.8645 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309300024.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:02 Heat of formation + Delta-G solvation = -2.531245 kcal Electronic energy + Delta-G solvation = -18226.777432 eV Core-core repulsion = 15213.581054 eV Total energy + Delta-G solvation = -3013.196378 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.57826 -38.72030 -36.16102 -35.72653 -32.83458 -32.19311 -31.45908 -29.79147 -27.73427 -25.96321 -24.15579 -22.78902 -20.98149 -19.44966 -17.35608 -16.95190 -16.64814 -16.06703 -15.28974 -15.11807 -14.46734 -14.17804 -14.06591 -13.58405 -13.31759 -12.74089 -12.64873 -12.54683 -12.31047 -12.07467 -11.78605 -11.75430 -11.23677 -11.01232 -10.96016 -10.72792 -10.45238 -9.90308 -9.59519 -9.43175 -9.13938 -8.88991 -8.43095 -7.73930 -6.33829 -4.38950 0.59476 1.51742 2.26471 2.42065 3.03077 3.18666 3.20404 3.90454 4.09291 4.12541 4.56556 4.80807 4.91240 4.98839 5.16066 5.18642 5.37657 5.52682 5.63991 5.76880 5.82153 5.88950 5.91434 6.15490 6.20057 6.36878 6.66361 6.91036 7.25690 7.51770 7.82710 7.95798 8.04365 8.28839 8.70943 9.23347 10.78449 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.021697 B = 0.007126 C = 0.005854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.180835 B = 3928.138760 C = 4782.238355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.406 3.594 3 O -0.460 6.460 4 C -0.234 4.234 5 C -0.011 4.011 6 C -0.076 4.076 7 C 0.210 3.790 8 H 0.065 0.935 9 N -0.851 5.851 10 C -0.543 4.543 11 H 0.077 0.923 12 C 0.079 3.921 13 N -0.883 5.883 14 Si 0.866 3.134 15 H -0.274 1.274 16 H -0.288 1.288 17 H -0.257 1.257 18 C 0.209 3.791 19 Cl -0.014 7.014 20 N -0.492 5.492 21 C 0.180 3.820 22 C -0.103 4.103 23 H 0.086 0.914 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.154 0.846 27 H 0.330 0.670 28 H 0.324 0.676 29 H 0.268 0.732 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.069 10.268 5.645 11.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.286 3.714 3 O -0.338 6.338 4 C -0.237 4.237 5 C -0.037 4.037 6 C -0.080 4.080 7 C 0.101 3.899 8 H 0.083 0.917 9 N -0.385 5.385 10 C -0.582 4.582 11 H 0.095 0.905 12 C -0.125 4.125 13 N -0.520 5.520 14 Si 0.695 3.305 15 H -0.200 1.200 16 H -0.215 1.215 17 H -0.182 1.182 18 C 0.045 3.955 19 Cl 0.015 6.985 20 N -0.203 5.203 21 C 0.041 3.959 22 C -0.160 4.160 23 H 0.105 0.895 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.171 0.829 27 H 0.142 0.858 28 H 0.141 0.859 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.707 10.828 6.074 12.532 hybrid contribution -1.552 -1.566 -0.206 2.214 sum 0.155 9.262 5.867 10.965 Atomic orbital electron populations 1.22232 0.93613 1.05253 1.04761 1.22224 0.91574 0.87078 0.70555 1.90471 1.71565 1.34420 1.37323 1.21294 0.95334 0.95948 1.11151 1.21726 1.00995 0.89568 0.91414 1.20704 0.91752 0.98065 0.97451 1.18486 0.87481 0.88222 0.95748 0.91726 1.59767 1.06182 1.18912 1.53611 1.21391 1.40468 1.04116 0.92249 0.90509 1.24956 0.95252 0.96578 0.95741 1.69878 1.42614 1.17116 1.22342 0.87106 0.79772 0.79573 0.84090 1.20005 1.21472 1.18185 1.21779 0.89022 0.88327 0.96353 1.98406 1.73891 1.30426 1.95748 1.66886 1.40830 0.97054 1.15571 1.21349 0.89723 0.93181 0.91650 1.20971 0.99887 0.91680 1.03447 0.89502 0.88761 0.88718 0.82886 0.85789 0.85930 0.92196 0.90214 0.91191 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.95 10.20 36.00 0.37 -1.58 16 2 C 0.41 5.44 7.16 -30.72 -0.22 5.22 16 3 O -0.46 -6.86 14.12 5.57 0.08 -6.78 16 4 C -0.23 -3.68 5.88 -104.92 -0.62 -4.30 16 5 C -0.01 -0.19 8.70 -38.80 -0.34 -0.53 16 6 C -0.08 -1.50 5.03 -104.51 -0.53 -2.03 16 7 C 0.21 4.55 1.94 -70.02 -0.14 4.41 16 8 H 0.07 1.48 6.41 -51.93 -0.33 1.15 16 9 N -0.85 -16.46 8.64 -6.65 -0.06 -16.52 16 10 C -0.54 -13.81 9.06 -34.44 -0.31 -14.12 16 11 H 0.08 2.20 7.98 -52.49 -0.42 1.78 16 12 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 13 N -0.88 -25.10 13.96 55.43 0.77 -24.32 16 14 Si 0.87 19.50 24.61 -169.99 -4.18 15.32 16 15 H -0.27 -5.83 7.01 56.52 0.40 -5.44 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 18 C 0.21 4.18 7.27 -17.31 -0.13 4.05 16 19 Cl -0.01 -0.27 27.45 -51.86 -1.42 -1.69 16 20 N -0.49 -9.30 10.23 -6.20 -0.06 -9.36 16 21 C 0.18 3.04 6.83 -82.09 -0.56 2.48 16 22 C -0.10 -1.44 8.87 36.00 0.32 -1.12 16 23 H 0.09 0.78 5.71 -51.92 -0.30 0.49 16 24 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.15 2.15 4.41 -52.48 -0.23 1.92 16 27 H 0.33 5.77 7.33 -39.29 -0.29 5.49 16 28 H 0.32 6.51 4.29 -39.29 -0.17 6.34 16 29 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.10 1.32 5.86 -51.93 -0.30 1.02 16 LS Contribution 278.97 15.07 4.20 4.20 Total: -1.00 -28.95 278.97 -5.82 -34.77 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -2.90 Total: 9.91 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -2.25 Total: -5.52 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.65 Total: -50.21 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: 0.08 Total: -6.78 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.18 Total: 15.32 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.42 Total: -1.69 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.95 -5.82 -34.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309300024.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.239 kcal (2) G-P(sol) polarization free energy of solvation -28.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds