Wall clock time and date at job start Mon Mar 30 2020 07:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00054 * 2 1 4 4 H 1.48503 * 109.47256 * 270.00440 * 3 2 1 5 5 H 1.48500 * 109.46894 * 30.00367 * 3 2 1 6 6 H 1.48498 * 109.47141 * 150.00046 * 3 2 1 7 7 C 1.37877 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00464 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99688 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46881 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47207 * 180.02562 * 10 9 7 12 12 C 1.38874 * 120.00402 * 179.97438 * 11 10 9 13 13 C 1.38891 * 120.16702 * 5.40889 * 12 11 10 14 14 C 1.38107 * 120.05563 * 179.97438 * 13 12 11 15 15 Cl 1.73602 * 119.80429 * 179.97438 * 14 13 12 16 16 C 1.38762 * 120.39144 * 359.97438 * 14 13 12 17 17 C 1.37697 * 120.33915 * 359.97438 * 16 14 13 18 18 C 1.39761 * 119.93791 * 0.02562 * 17 16 14 19 19 C 1.47378 * 120.19450 * 180.27464 * 18 17 16 20 20 N 1.34773 * 119.99812 * 354.08245 * 19 18 17 21 21 O 1.21608 * 120.00418 * 174.08401 * 19 18 17 22 22 H 0.97005 * 120.00073 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47503 * 59.99551 * 9 7 2 24 24 H 1.09000 * 109.47200 * 299.99607 * 9 7 2 25 25 H 1.08994 * 109.47345 * 60.00124 * 10 9 7 26 26 H 1.08996 * 109.47372 * 299.99493 * 10 9 7 27 27 H 0.97004 * 119.99534 * 359.97438 * 11 10 9 28 28 H 1.08008 * 119.97499 * 359.95324 * 13 12 11 29 29 H 1.08005 * 119.83317 * 180.02562 * 16 14 13 30 30 H 1.07995 * 120.02520 * 180.02562 * 17 16 14 31 31 H 0.97008 * 120.00205 * 0.02562 * 20 19 18 32 32 H 0.96995 * 120.00394 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0214 -2.6365 -0.0010 11 7 5.4865 -2.6366 -0.0009 12 6 6.1809 -3.8392 -0.0003 13 6 5.4946 -5.0415 -0.1129 14 6 6.1876 -6.2361 -0.1125 15 17 5.3232 -7.7351 -0.2529 16 6 7.5706 -6.2454 -0.0006 17 6 8.2674 -5.0630 0.1109 18 6 7.5802 -3.8460 0.1120 19 6 8.3208 -2.5768 0.2249 20 7 9.6500 -2.5896 0.4470 21 8 7.7325 -1.5178 0.1177 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6803 0.8888 24 1 3.8745 -0.6801 -0.8912 25 1 3.6578 -3.1506 -0.8907 26 1 3.6586 -3.1501 0.8892 27 1 5.9715 -1.7965 -0.0014 28 1 4.4181 -5.0422 -0.2005 29 1 8.1035 -7.1849 -0.0017 30 1 9.3438 -5.0761 0.1973 31 1 10.1194 -3.4343 0.5322 32 1 10.1375 -1.7544 0.5210 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309594151.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:41 Heat of formation + Delta-G solvation = -24.561103 kcal Electronic energy + Delta-G solvation = -17503.141293 eV Core-core repulsion = 14488.989628 eV Total energy + Delta-G solvation = -3014.151664 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = -0.04 seconds Orbital eigenvalues (eV) -40.40035 -38.34932 -36.68115 -35.83816 -33.86655 -32.97535 -30.99158 -30.71317 -28.40181 -24.82053 -24.05868 -21.90586 -21.24831 -20.15055 -18.24425 -17.20941 -17.06273 -16.67401 -15.40078 -15.26035 -14.96256 -14.60287 -14.25657 -14.01162 -13.86267 -13.43192 -13.29221 -12.60830 -12.54427 -11.87782 -11.74582 -11.36938 -11.19637 -10.97923 -10.54334 -10.13597 -9.98364 -9.88586 -9.87726 -9.68533 -9.33464 -8.89257 -8.60121 -7.30316 -6.10892 -4.11067 0.74334 1.52819 2.04664 2.76816 3.29513 3.36864 3.42109 3.42336 3.79715 3.83039 4.40976 4.62118 4.79987 5.10300 5.23084 5.27347 5.43384 5.57952 5.92739 6.02423 6.07703 6.10712 6.23627 6.48921 6.57514 6.62726 7.01597 7.15931 7.23986 7.53131 7.69794 7.99185 8.35790 8.44883 8.91420 9.50190 11.01799 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.017417 B = 0.005276 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.283838 B = 5305.923920 C = 6888.126739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.119 3.881 11 N -0.707 5.707 12 C 0.298 3.702 13 C -0.204 4.204 14 C 0.048 3.952 15 Cl -0.071 7.071 16 C -0.201 4.201 17 C -0.019 4.019 18 C -0.248 4.248 19 C 0.576 3.424 20 N -0.853 5.853 21 O -0.548 6.548 22 H 0.265 0.735 23 H 0.023 0.977 24 H 0.019 0.981 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.420 0.580 28 H 0.143 0.857 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.400 0.600 32 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.097 -12.403 0.596 23.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.094 0.906 9 C -0.059 4.059 10 C -0.004 4.004 11 N -0.338 5.338 12 C 0.181 3.819 13 C -0.228 4.228 14 C 0.020 3.980 15 Cl -0.042 7.042 16 C -0.222 4.222 17 C -0.039 4.039 18 C -0.257 4.257 19 C 0.365 3.635 20 N -0.416 5.416 21 O -0.427 6.427 22 H 0.075 0.925 23 H 0.042 0.958 24 H 0.037 0.963 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.268 0.732 28 H 0.161 0.839 29 H 0.149 0.851 30 H 0.146 0.854 31 H 0.229 0.771 32 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 19.087 -11.707 0.495 22.397 hybrid contribution 0.850 0.904 0.040 1.241 sum 19.937 -10.804 0.536 22.682 Atomic orbital electron populations 1.69899 1.06260 1.27097 1.50419 1.24962 0.94739 0.99148 0.94221 0.86790 0.80424 0.83513 0.78697 1.20141 1.21214 1.18909 1.20888 0.88505 0.94857 1.51903 0.90622 1.19743 0.97774 0.91110 0.97248 1.21722 0.76729 1.01167 1.00801 1.46299 1.07933 1.06628 1.72957 1.17700 0.89363 0.87309 0.87545 1.20610 1.01154 0.89302 1.11711 1.20817 0.92236 0.86581 0.98395 1.98374 1.77195 1.32645 1.95971 1.20517 0.91754 0.98678 1.11285 1.20812 0.98791 0.90573 0.93720 1.19186 0.92345 0.93256 1.20931 1.18080 0.82038 0.88547 0.74821 1.43643 1.08851 1.12384 1.76755 1.90522 1.67361 1.32817 1.51988 0.92540 0.95837 0.96263 0.92061 0.92033 0.73186 0.83939 0.85134 0.85394 0.77096 0.76632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 21.94 27.47 -169.99 -4.67 17.28 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.02 -0.51 4.16 -27.88 -0.12 -0.62 16 10 C 0.12 2.39 4.87 -4.04 -0.02 2.37 16 11 N -0.71 -13.02 5.59 -58.45 -0.33 -13.35 16 12 C 0.30 4.73 6.65 -83.62 -0.56 4.17 16 13 C -0.20 -2.99 9.07 -39.39 -0.36 -3.35 16 14 C 0.05 0.60 6.32 -39.44 -0.25 0.35 16 15 Cl -0.07 -0.82 28.94 -51.86 -1.50 -2.33 16 16 C -0.20 -2.09 9.80 -39.59 -0.39 -2.48 16 17 C -0.02 -0.19 9.52 -39.21 -0.37 -0.56 16 18 C -0.25 -3.30 5.89 -104.80 -0.62 -3.91 16 19 C 0.58 7.74 8.02 -12.54 -0.10 7.64 16 20 N -0.85 -6.95 8.82 30.42 0.27 -6.69 16 21 O -0.55 -9.64 14.48 5.27 0.08 -9.56 16 22 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 23 H 0.02 0.58 7.20 -51.93 -0.37 0.20 16 24 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 25 H 0.06 1.20 7.74 -51.93 -0.40 0.80 16 26 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 27 H 0.42 8.21 4.98 -40.95 -0.20 8.01 16 28 H 0.14 2.14 6.72 -52.48 -0.35 1.78 16 29 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 30 H 0.13 0.73 6.44 -52.49 -0.34 0.39 16 31 H 0.40 1.94 6.89 -40.82 -0.28 1.66 16 32 H 0.40 2.79 8.93 -40.82 -0.36 2.43 16 LS Contribution 288.38 15.07 4.35 4.35 Total: -1.00 -32.46 288.38 -7.38 -39.84 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -3.14 Total: 6.75 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -3.21 Total: -9.53 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.72 Total: -46.80 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.08 Total: -9.56 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.28 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.46 -7.38 -39.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309594151.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.283 kcal (2) G-P(sol) polarization free energy of solvation -32.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.04 seconds