Wall clock time and date at job start Mon Mar 30 2020 07:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00054 * 2 1 4 4 H 1.48503 * 109.47256 * 270.00440 * 3 2 1 5 5 H 1.48500 * 109.46894 * 30.00367 * 3 2 1 6 6 H 1.48498 * 109.47141 * 150.00046 * 3 2 1 7 7 C 1.37877 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00464 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99688 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46881 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47207 * 180.02562 * 10 9 7 12 12 C 1.38874 * 120.00402 * 179.97438 * 11 10 9 13 13 C 1.38891 * 120.16702 * 5.40889 * 12 11 10 14 14 C 1.38107 * 120.05563 * 179.97438 * 13 12 11 15 15 Cl 1.73602 * 119.80429 * 179.97438 * 14 13 12 16 16 C 1.38762 * 120.39144 * 359.97438 * 14 13 12 17 17 C 1.37697 * 120.33915 * 359.97438 * 16 14 13 18 18 C 1.39761 * 119.93791 * 0.02562 * 17 16 14 19 19 C 1.47378 * 120.19450 * 180.27464 * 18 17 16 20 20 N 1.34773 * 119.99812 * 354.08245 * 19 18 17 21 21 O 1.21608 * 120.00418 * 174.08401 * 19 18 17 22 22 H 0.97005 * 120.00073 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47503 * 59.99551 * 9 7 2 24 24 H 1.09000 * 109.47200 * 299.99607 * 9 7 2 25 25 H 1.08994 * 109.47345 * 60.00124 * 10 9 7 26 26 H 1.08996 * 109.47372 * 299.99493 * 10 9 7 27 27 H 0.97004 * 119.99534 * 359.97438 * 11 10 9 28 28 H 1.08008 * 119.97499 * 359.95324 * 13 12 11 29 29 H 1.08005 * 119.83317 * 180.02562 * 16 14 13 30 30 H 1.07995 * 120.02520 * 180.02562 * 17 16 14 31 31 H 0.97008 * 120.00205 * 0.02562 * 20 19 18 32 32 H 0.96995 * 120.00394 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0214 -2.6365 -0.0010 11 7 5.4865 -2.6366 -0.0009 12 6 6.1809 -3.8392 -0.0003 13 6 5.4946 -5.0415 -0.1129 14 6 6.1876 -6.2361 -0.1125 15 17 5.3232 -7.7351 -0.2529 16 6 7.5706 -6.2454 -0.0006 17 6 8.2674 -5.0630 0.1109 18 6 7.5802 -3.8460 0.1120 19 6 8.3208 -2.5768 0.2249 20 7 9.6500 -2.5896 0.4470 21 8 7.7325 -1.5178 0.1177 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6803 0.8888 24 1 3.8745 -0.6801 -0.8912 25 1 3.6578 -3.1506 -0.8907 26 1 3.6586 -3.1501 0.8892 27 1 5.9715 -1.7965 -0.0014 28 1 4.4181 -5.0422 -0.2005 29 1 8.1035 -7.1849 -0.0017 30 1 9.3438 -5.0761 0.1973 31 1 10.1194 -3.4343 0.5322 32 1 10.1375 -1.7544 0.5210 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309594151.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:36 Heat of formation + Delta-G solvation = -48.754362 kcal Electronic energy + Delta-G solvation = -17504.190391 eV Core-core repulsion = 14488.989628 eV Total energy + Delta-G solvation = -3015.200763 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.43663 -39.38468 -37.78859 -37.04635 -35.21879 -34.59259 -32.64256 -31.72469 -29.79529 -26.54616 -25.06091 -23.35688 -22.46448 -21.47361 -19.34395 -18.86990 -18.15630 -17.90738 -16.57135 -16.37289 -16.24972 -16.16828 -15.68380 -15.45202 -15.10939 -14.62645 -14.45293 -14.39229 -13.53331 -13.45118 -13.36038 -12.72350 -12.56240 -12.17482 -12.08569 -11.88894 -11.84956 -11.53724 -11.04775 -10.98701 -10.81633 -10.72925 -9.86750 -8.50366 -8.35645 -6.41094 -0.24723 0.54063 1.08336 1.32106 1.33522 1.45929 1.76919 2.30702 2.51114 2.59142 2.81799 2.99176 3.75200 3.96424 4.17020 4.24467 4.26470 4.36898 4.48709 4.63210 4.72750 4.98299 5.12504 5.19035 5.29167 5.32393 5.50326 5.66388 5.86578 6.15695 6.22545 6.46896 6.63860 6.83558 7.23849 7.37687 8.80391 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.017417 B = 0.005276 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.283838 B = 5305.923920 C = 6888.126739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.946 3.054 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.256 1.256 7 C -0.533 4.533 8 H 0.043 0.957 9 C -0.014 4.014 10 C 0.138 3.862 11 N -0.724 5.724 12 C 0.268 3.732 13 C -0.224 4.224 14 C 0.042 3.958 15 Cl -0.065 7.065 16 C -0.186 4.186 17 C -0.002 4.002 18 C -0.250 4.250 19 C 0.569 3.431 20 N -0.824 5.824 21 O -0.595 6.595 22 H 0.269 0.731 23 H 0.020 0.980 24 H 0.020 0.980 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.414 0.586 28 H 0.126 0.874 29 H 0.166 0.834 30 H 0.181 0.819 31 H 0.419 0.581 32 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.922 -13.307 0.752 27.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.184 4.184 3 Si 0.770 3.230 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.180 1.180 7 C -0.571 4.571 8 H 0.061 0.939 9 C -0.052 4.052 10 C 0.014 3.986 11 N -0.359 5.359 12 C 0.155 3.845 13 C -0.248 4.248 14 C 0.014 3.986 15 Cl -0.036 7.036 16 C -0.206 4.206 17 C -0.021 4.021 18 C -0.259 4.259 19 C 0.358 3.642 20 N -0.388 5.388 21 O -0.478 6.478 22 H 0.078 0.922 23 H 0.039 0.961 24 H 0.038 0.962 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.261 0.739 28 H 0.144 0.856 29 H 0.183 0.817 30 H 0.198 0.802 31 H 0.252 0.748 32 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 22.997 -12.690 0.659 26.274 hybrid contribution -0.230 0.967 0.000 0.994 sum 22.768 -11.723 0.659 25.617 Atomic orbital electron populations 1.70031 1.08015 1.28347 1.51871 1.25866 0.95579 1.03113 0.93841 0.85720 0.79284 0.78761 0.79271 1.19102 1.20332 1.17959 1.21186 0.90794 0.93779 1.51335 0.93872 1.19593 0.94997 0.93743 0.96881 1.21242 0.78699 0.98304 1.00355 1.45987 1.06446 1.07502 1.75951 1.17997 0.90692 0.86521 0.89260 1.20557 1.00666 0.90161 1.13391 1.21009 0.93345 0.86089 0.98167 1.98379 1.77426 1.31897 1.95897 1.20995 0.90687 1.00423 1.08523 1.21338 1.01133 0.88636 0.91011 1.19441 0.91391 0.94805 1.20227 1.18217 0.83419 0.87824 0.74735 1.43393 1.07025 1.14070 1.74274 1.90500 1.68619 1.34309 1.54359 0.92190 0.96125 0.96191 0.92555 0.92659 0.73868 0.85629 0.81693 0.80224 0.74781 0.75518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.45 13.96 21.45 0.30 -59.15 16 2 C 0.01 0.84 5.47 84.65 0.46 1.30 16 3 Si 0.95 45.77 27.47 68.60 1.88 47.65 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.26 -11.92 6.54 99.48 0.65 -11.26 16 7 C -0.53 -31.30 9.66 25.60 0.25 -31.06 16 8 H 0.04 2.73 7.99 -2.91 -0.02 2.71 16 9 C -0.01 -0.71 4.16 29.85 0.12 -0.59 16 10 C 0.14 5.84 4.87 86.38 0.42 6.26 16 11 N -0.72 -27.49 5.59 -338.85 -1.89 -29.38 16 12 C 0.27 8.50 6.65 38.71 0.26 8.76 16 13 C -0.22 -6.60 9.07 22.40 0.20 -6.39 16 14 C 0.04 0.97 6.32 22.36 0.14 1.11 16 15 Cl -0.07 -1.42 28.94 -2.72 -0.08 -1.50 16 16 C -0.19 -3.08 9.80 22.27 0.22 -2.86 16 17 C 0.00 -0.03 9.52 22.51 0.21 0.18 16 18 C -0.25 -6.09 5.89 -19.98 -0.12 -6.21 16 19 C 0.57 14.12 8.02 86.65 0.69 14.81 16 20 N -0.82 -10.37 8.82 -175.92 -1.55 -11.92 16 21 O -0.60 -20.70 14.48 -4.06 -0.06 -20.76 16 22 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 23 H 0.02 1.02 7.20 -2.39 -0.02 1.01 16 24 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16 25 H 0.06 2.36 7.74 -2.39 -0.02 2.35 16 26 H 0.06 2.33 8.12 -2.39 -0.02 2.31 16 27 H 0.41 16.63 4.98 -94.80 -0.47 16.15 16 28 H 0.13 4.01 6.72 -2.91 -0.02 3.99 16 29 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 30 H 0.18 0.79 6.44 -2.91 -0.02 0.77 16 31 H 0.42 1.86 6.89 -92.70 -0.64 1.22 16 32 H 0.41 4.32 8.93 -92.71 -0.83 3.50 16 Total: -1.00 -73.99 288.38 0.66 -73.33 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -0.80 Total: 16.41 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 2.87 Total: -14.68 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -3.15 Total: -100.45 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.06 Total: -20.76 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.88 Total: 47.65 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.50 kcal Total: -73.99 0.66 -73.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309594151.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.573 kcal (2) G-P(sol) polarization free energy of solvation -73.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds