Wall clock time and date at job start Mon Mar 30 2020 08:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36008 * 116.99960 * 2 1 4 4 C 1.38483 * 120.08113 * 359.97438 * 3 2 1 5 5 C 1.38309 * 120.02498 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.18598 * 359.97438 * 5 4 3 7 7 C 1.38198 * 120.16856 * 0.02562 * 6 5 4 8 8 C 1.38797 * 119.97437 * 359.69844 * 7 6 5 9 9 S 1.76198 * 120.09536 * 180.28120 * 8 7 6 10 10 C 1.81397 * 103.00185 * 0.29118 * 9 8 7 11 11 C 1.53002 * 109.47291 * 180.02562 * 10 9 8 12 12 O 1.42896 * 109.47052 * 180.02562 * 11 10 9 13 13 C 1.42900 * 113.99715 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46863 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00163 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99993 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00309 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99852 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47519 * 89.99537 * 18 16 14 20 20 H 1.48497 * 109.47014 * 209.99876 * 18 16 14 21 21 H 1.48508 * 109.46968 * 329.99291 * 18 16 14 22 22 H 1.09001 * 109.47103 * 60.00643 * 1 2 3 23 23 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47187 * 300.00203 * 1 2 3 25 25 H 1.08005 * 119.98852 * 0.02562 * 4 3 2 26 26 H 1.07997 * 119.90467 * 179.97438 * 5 4 3 27 27 H 1.08000 * 119.91062 * 180.02562 * 6 5 4 28 28 H 1.08003 * 120.01637 * 179.97438 * 7 6 5 29 29 H 1.09000 * 109.47504 * 300.00456 * 10 9 8 30 30 H 1.09007 * 109.46906 * 60.00543 * 10 9 8 31 31 H 1.08999 * 109.46761 * 300.00164 * 11 10 9 32 32 H 1.08993 * 109.46891 * 60.00078 * 11 10 9 33 33 H 1.08994 * 109.47522 * 299.99633 * 13 12 11 34 34 H 1.08998 * 109.47177 * 60.00255 * 13 12 11 35 35 H 0.96998 * 120.00413 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2939 2.3743 -0.0005 5 6 1.9230 3.6061 -0.0011 6 6 3.3036 3.6816 -0.0005 7 6 4.0623 2.5265 0.0000 8 6 3.4381 1.2868 0.0063 9 16 4.4024 -0.1879 0.0145 10 6 6.1050 0.4378 0.0208 11 6 7.0813 -0.7402 0.0277 12 8 8.4225 -0.2473 0.0333 13 6 9.4183 -1.2722 0.0405 14 6 10.7874 -0.6422 0.0453 15 1 10.8870 0.4331 0.0434 16 6 11.9128 -1.4388 0.0531 17 7 13.1075 -0.8892 0.0567 18 14 11.7404 -3.2989 0.0570 19 1 11.7018 -3.7955 -1.3420 20 1 12.8985 -3.9018 0.7645 21 1 10.4839 -3.6781 0.7518 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2153 2.3191 -0.0005 26 1 1.3342 4.5114 -0.0019 27 1 3.7903 4.6457 -0.0005 28 1 5.1406 2.5883 0.0000 29 1 6.2730 1.0432 -0.8698 30 1 6.2647 1.0476 0.9101 31 1 6.9135 -1.3460 0.9182 32 1 6.9215 -1.3497 -0.8617 33 1 9.2987 -1.8888 0.9312 34 1 9.3075 -1.8928 -0.8487 35 1 13.8992 -1.4496 0.0626 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338545483.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:11:37 Heat of formation + Delta-G solvation = -58.327826 kcal Electronic energy + Delta-G solvation = -17011.547313 eV Core-core repulsion = 14101.515463 eV Total energy + Delta-G solvation = -2910.031850 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.25239 -37.58618 -37.09962 -32.82672 -31.71209 -31.05280 -30.26113 -27.80243 -27.50871 -23.37476 -22.94587 -21.93548 -21.83292 -18.61427 -17.17935 -16.89979 -16.33888 -16.03771 -15.97688 -15.60215 -15.09411 -14.63696 -14.43406 -13.97362 -13.56443 -13.54451 -13.01319 -12.91798 -12.48771 -12.30015 -12.00307 -11.51600 -11.39034 -11.31821 -11.04047 -10.81430 -10.72248 -10.14766 -9.90107 -9.88069 -9.23840 -8.93498 -8.72324 -8.53716 -7.31610 -6.14549 -4.14392 0.95766 1.17101 1.40587 2.43385 3.00197 3.23951 3.31049 3.32556 3.44863 4.33367 4.52385 4.58230 4.64293 4.81805 4.84080 4.96491 5.03845 5.10397 5.16822 5.17836 5.30121 5.41715 5.51402 5.62019 5.88319 5.95362 5.99088 6.02466 6.25119 6.46202 6.54859 6.94418 7.06610 7.54241 7.91397 8.59641 8.95627 9.43961 10.98293 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.038523 B = 0.003217 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.670949 B = 8701.554767 C = 9397.168995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.307 6.307 3 C 0.141 3.859 4 C -0.193 4.193 5 C -0.090 4.090 6 C -0.135 4.135 7 C -0.096 4.096 8 C -0.113 4.113 9 S -0.082 6.082 10 C -0.113 4.113 11 C 0.077 3.923 12 O -0.378 6.378 13 C 0.170 3.830 14 C -0.522 4.522 15 H 0.083 0.917 16 C 0.073 3.927 17 N -0.894 5.894 18 Si 0.876 3.124 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.265 1.265 22 H 0.055 0.945 23 H 0.101 0.899 24 H 0.055 0.945 25 H 0.131 0.869 26 H 0.126 0.874 27 H 0.128 0.872 28 H 0.135 0.865 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.006 0.994 34 H 0.001 0.999 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.969 5.075 -0.109 27.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.220 6.220 3 C 0.090 3.910 4 C -0.214 4.214 5 C -0.111 4.111 6 C -0.155 4.155 7 C -0.120 4.120 8 C -0.226 4.226 9 S 0.162 5.838 10 C -0.261 4.261 11 C -0.002 4.002 12 O -0.297 6.297 13 C 0.095 3.905 14 C -0.560 4.560 15 H 0.101 0.899 16 C -0.129 4.129 17 N -0.532 5.532 18 Si 0.702 3.298 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.190 1.190 22 H 0.073 0.927 23 H 0.119 0.881 24 H 0.073 0.927 25 H 0.149 0.851 26 H 0.144 0.856 27 H 0.146 0.854 28 H 0.153 0.847 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.019 0.981 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -26.871 3.785 -0.104 27.137 hybrid contribution 0.109 0.301 -0.015 0.321 sum -26.763 4.086 -0.120 27.073 Atomic orbital electron populations 1.23074 0.78372 1.04098 1.01219 1.86173 1.21216 1.26205 1.88384 1.18354 0.90162 0.84831 0.97621 1.21127 0.99836 0.91987 1.08438 1.20960 0.94643 0.96926 0.98547 1.21006 0.93830 0.98162 1.02538 1.21172 1.00435 0.90692 0.99740 1.21067 0.93546 0.97888 1.10145 1.85539 0.99064 1.07188 1.91997 1.23625 0.93140 1.02693 1.06671 1.21821 0.84417 0.93371 1.00605 1.87896 1.12040 1.34633 1.95181 1.20652 0.87589 0.87618 0.94679 1.20868 0.87119 0.96397 1.51592 0.89905 1.24761 0.94874 0.98734 0.94518 1.69867 0.97529 1.35740 1.50094 0.86849 0.78309 0.85756 0.78865 1.19829 1.20692 1.19005 0.92652 0.88095 0.92658 0.85129 0.85605 0.85407 0.84687 0.88632 0.88626 0.93204 0.93199 0.97630 0.98088 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.57 9.87 -19.77 -0.20 -3.76 16 3 C 0.14 1.70 6.69 -39.07 -0.26 1.44 16 4 C -0.19 -1.84 9.04 -39.47 -0.36 -2.20 16 5 C -0.09 -0.80 10.04 -39.54 -0.40 -1.20 16 6 C -0.14 -1.34 10.04 -39.59 -0.40 -1.74 16 7 C -0.10 -1.15 9.36 -39.39 -0.37 -1.51 16 8 C -0.11 -1.50 6.12 -38.96 -0.24 -1.74 16 9 S -0.08 -1.17 21.41 -107.50 -2.30 -3.47 16 10 C -0.11 -1.70 4.70 37.16 0.17 -1.52 16 11 C 0.08 1.38 5.95 37.16 0.22 1.60 16 12 O -0.38 -8.82 10.33 -35.23 -0.36 -9.18 16 13 C 0.17 4.34 4.76 36.01 0.17 4.51 16 14 C -0.52 -15.56 9.99 -34.44 -0.34 -15.90 16 15 H 0.08 2.69 8.06 -52.49 -0.42 2.27 16 16 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 17 N -0.89 -27.58 13.96 55.43 0.77 -26.80 16 18 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 22 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 23 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 25 H 0.13 0.89 6.30 -52.48 -0.33 0.56 16 26 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 27 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 28 H 0.14 1.55 5.88 -52.48 -0.31 1.24 16 29 H 0.10 1.39 7.74 -51.92 -0.40 0.98 16 30 H 0.10 1.39 7.76 -51.92 -0.40 0.99 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.01 0.15 7.20 -51.93 -0.37 -0.22 16 34 H 0.00 0.03 7.57 -51.93 -0.39 -0.36 16 35 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 310.42 15.07 4.68 4.68 Total: -1.00 -32.99 310.42 -7.69 -40.68 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -4.71 Total: -3.84 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -0.90 Total: -15.02 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 0.77 Total: -26.80 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.56 Total: -12.94 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 16 Polarization: -1.17 SS G_CDS: -2.30 Total: -3.47 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.99 -7.69 -40.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338545483.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.649 kcal (2) G-P(sol) polarization free energy of solvation -32.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds