Wall clock time and date at job start Mon Mar 30 2020 06:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 120.00234 * 2 1 4 4 C 1.50698 * 109.46877 * 121.40090 * 3 2 1 5 5 C 1.38170 * 119.99489 * 89.17990 * 4 3 2 6 6 O 1.35671 * 120.21677 * 359.96762 * 5 4 3 7 7 C 1.41434 * 119.56850 * 180.22428 * 5 4 3 8 8 C 1.41012 * 120.21830 * 179.76207 * 7 5 4 9 9 H 1.07998 * 120.00439 * 25.18292 * 8 7 5 10 10 C 1.39867 * 119.99885 * 205.17779 * 8 7 5 11 11 N 1.30933 * 120.00170 * 17.34944 * 10 8 7 12 12 Si 1.86794 * 119.99825 * 197.35130 * 10 8 7 13 13 H 1.48501 * 109.47191 * 265.08835 * 12 10 8 14 14 H 1.48503 * 109.47517 * 25.09067 * 12 10 8 15 15 H 1.48509 * 109.47351 * 145.08966 * 12 10 8 16 16 C 1.40811 * 119.55794 * 359.49007 * 7 5 4 17 17 C 1.36379 * 119.98109 * 0.25239 * 16 7 5 18 18 Cl 1.73595 * 119.78115 * 180.02562 * 17 16 7 19 19 C 1.38936 * 119.99314 * 268.89001 * 4 3 2 20 20 O 1.35705 * 119.78008 * 0.05180 * 19 4 3 21 21 C 1.42905 * 116.99649 * 266.37928 * 20 19 4 22 22 H 1.08005 * 120.00102 * 180.02562 * 1 2 3 23 23 H 1.07998 * 119.99878 * 359.97438 * 1 2 3 24 24 H 1.07999 * 119.99978 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.46496 * 1.40051 * 3 2 1 26 26 H 1.08998 * 109.47264 * 241.40119 * 3 2 1 27 27 H 0.96699 * 113.99766 * 270.25332 * 6 5 4 28 28 H 0.96994 * 119.99947 * 179.97438 * 11 10 8 29 29 H 1.08007 * 120.01021 * 180.22936 * 16 7 5 30 30 H 1.09000 * 109.46819 * 183.76612 * 21 20 19 31 31 H 1.08999 * 109.47220 * 303.76722 * 21 20 19 32 32 H 1.09004 * 109.47069 * 63.76545 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9557 1.3699 1.2127 5 6 4.2437 0.8734 1.1501 6 8 4.7092 0.3262 -0.0008 7 6 5.0717 0.9346 2.2950 8 6 6.3866 0.4274 2.2478 9 1 6.9099 0.3703 1.3048 10 6 7.0133 -0.0015 3.4224 11 7 6.2993 -0.2560 4.4900 12 14 8.8689 -0.2111 3.4679 13 1 9.2141 -1.6274 3.1848 14 1 9.4914 0.6646 2.4427 15 1 9.3765 0.1629 4.8125 16 6 4.5762 1.5104 3.4807 17 6 3.3038 1.9997 3.5207 18 17 2.6985 2.7091 4.9849 19 6 2.4852 1.9343 2.3918 20 8 1.2211 2.4248 2.4467 21 6 1.0534 3.8177 2.1750 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8499 -0.9353 -0.0004 25 1 1.3554 2.1334 0.0251 26 1 2.6712 1.3738 -0.9023 27 1 4.5479 -0.6242 -0.0778 28 1 6.7339 -0.5539 5.3044 29 1 5.2035 1.5642 4.3582 30 1 0.0082 4.0924 2.3173 31 1 1.6775 4.3982 2.8544 32 1 1.3466 4.0250 1.1458 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380887820.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:58 Heat of formation + Delta-G solvation = -60.200642 kcal Electronic energy + Delta-G solvation = -18391.600042 eV Core-core repulsion = 15343.610180 eV Total energy + Delta-G solvation = -3047.989862 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.14332 -37.14979 -35.75659 -34.91695 -34.50515 -33.22843 -30.01527 -28.89904 -26.79519 -25.49909 -24.48913 -20.99444 -20.83375 -19.34224 -17.43512 -17.31788 -16.14105 -15.66059 -15.21872 -14.79948 -14.43509 -14.11553 -13.61920 -13.43255 -12.96387 -12.71746 -12.37578 -11.96866 -11.61462 -11.50018 -11.39212 -11.16791 -10.91252 -10.85148 -10.69690 -10.44957 -9.94965 -9.93471 -9.37706 -9.26482 -9.07977 -8.74982 -7.52481 -7.36453 -7.00777 -4.57554 2.29529 2.44246 2.81442 2.94954 2.96580 3.03486 3.23672 3.75853 4.17271 4.73993 5.11599 5.38251 5.62491 5.71966 5.80598 5.84127 5.94116 5.98470 6.08906 6.26976 6.41621 6.65641 6.76297 6.94347 6.99693 7.01671 7.17696 7.23155 7.41704 7.61901 7.81956 8.14102 8.39580 8.55315 8.56418 8.95344 9.89681 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.018521 B = 0.007766 C = 0.005913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.468066 B = 3604.373959 C = 4734.221532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 C -0.042 4.042 4 C -0.067 4.067 5 C -0.012 4.012 6 O -0.486 6.486 7 C 0.101 3.899 8 C -0.434 4.434 9 H 0.091 0.909 10 C 0.072 3.928 11 N -0.778 5.778 12 Si 0.914 3.086 13 H -0.268 1.268 14 H -0.257 1.257 15 H -0.273 1.273 16 C -0.145 4.145 17 C -0.014 4.014 18 Cl -0.110 7.110 19 C -0.029 4.029 20 O -0.318 6.318 21 C 0.029 3.971 22 H 0.090 0.910 23 H 0.093 0.907 24 H 0.102 0.898 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.358 0.642 28 H 0.287 0.713 29 H 0.135 0.865 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.105 1.720 -3.194 5.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.143 4.143 3 C -0.079 4.079 4 C -0.069 4.069 5 C -0.058 4.058 6 O -0.293 6.293 7 C 0.098 3.902 8 C -0.462 4.462 9 H 0.109 0.891 10 C -0.149 4.149 11 N -0.401 5.401 12 Si 0.738 3.262 13 H -0.193 1.193 14 H -0.181 1.181 15 H -0.198 1.198 16 C -0.165 4.165 17 C -0.041 4.041 18 Cl -0.081 7.081 19 C -0.074 4.074 20 O -0.234 6.234 21 C -0.066 4.066 22 H 0.108 0.892 23 H 0.111 0.889 24 H 0.120 0.880 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.210 0.790 28 H 0.098 0.902 29 H 0.153 0.847 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.113 2.182 -2.890 5.480 hybrid contribution 0.756 -0.462 0.500 1.017 sum -3.357 1.720 -2.391 4.466 Atomic orbital electron populations 1.23649 0.95850 1.01067 1.03541 1.22784 0.95686 0.98169 0.97674 1.19450 0.96952 0.95264 0.96204 1.19580 0.92981 1.01256 0.93048 1.18028 0.90936 1.08539 0.88279 1.84734 1.81907 1.25472 1.37228 1.17772 0.93187 0.89957 0.89328 1.19565 0.97584 1.34049 0.94966 0.89051 1.26082 1.01348 0.92675 0.94783 1.69845 1.38194 1.29405 1.02668 0.86183 0.81365 0.79647 0.79031 1.19281 1.18090 1.19776 1.20832 0.93264 1.01654 1.00736 1.20888 0.94911 1.02433 0.85908 1.98257 1.88769 1.83346 1.37750 1.17403 0.86767 1.11310 0.91939 1.86078 1.24464 1.22433 1.90421 1.22892 1.00809 0.83941 0.98938 0.89209 0.88915 0.87971 0.91505 0.90405 0.78967 0.90195 0.84735 0.90590 0.94354 0.94902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.06 14.32 29.02 0.42 -2.65 16 2 C -0.13 -2.08 9.50 -36.02 -0.34 -2.42 16 3 C -0.04 -0.76 5.34 -29.03 -0.16 -0.91 16 4 C -0.07 -1.46 5.13 -104.39 -0.54 -2.00 16 5 C -0.01 -0.28 6.71 -38.39 -0.26 -0.54 16 6 O -0.49 -10.16 11.85 -18.72 -0.22 -10.38 16 7 C 0.10 2.55 5.58 -106.66 -0.59 1.95 16 8 C -0.43 -10.74 8.70 -37.92 -0.33 -11.07 16 9 H 0.09 2.22 7.65 -52.49 -0.40 1.82 16 10 C 0.07 1.67 5.14 -17.33 -0.09 1.58 16 11 N -0.78 -18.80 10.98 55.54 0.61 -18.19 16 12 Si 0.91 17.52 29.59 -169.99 -5.03 12.49 16 13 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 14 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 15 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 16 C -0.14 -3.61 8.38 -39.28 -0.33 -3.94 16 17 C -0.01 -0.34 6.29 -39.74 -0.25 -0.59 16 18 Cl -0.11 -2.29 28.22 -51.86 -1.46 -3.75 16 19 C -0.03 -0.65 5.71 -38.82 -0.22 -0.87 16 20 O -0.32 -6.53 8.96 -18.82 -0.17 -6.70 16 21 C 0.03 0.49 10.81 101.05 1.09 1.58 16 22 H 0.09 1.18 8.06 -52.48 -0.42 0.76 16 23 H 0.09 1.35 7.83 -52.49 -0.41 0.94 16 24 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 25 H 0.07 1.17 6.25 -51.93 -0.32 0.85 16 26 H 0.08 1.37 7.55 -51.93 -0.39 0.98 16 27 H 0.36 6.17 9.06 45.56 0.41 6.58 16 28 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 29 H 0.14 3.47 6.20 -52.48 -0.33 3.14 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.04 0.65 7.94 -51.93 -0.41 0.24 16 32 H 0.03 0.52 7.52 -51.93 -0.39 0.13 16 LS Contribution 295.08 15.07 4.45 4.45 Total: -1.00 -26.59 295.08 -6.07 -32.66 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -2.65 Total: 9.30 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -1.60 Total: -19.88 kcal Atomic # 7 Polarization: -18.80 SS G_CDS: 0.61 Total: -18.19 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.39 Total: -17.09 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -1.46 Total: -3.75 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.59 -6.07 -32.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380887820.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.540 kcal (2) G-P(sol) polarization free energy of solvation -26.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds