Wall clock time and date at job start Mon Mar 30 2020 06:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 120.00234 * 2 1 4 4 C 1.50698 * 109.46877 * 121.40090 * 3 2 1 5 5 C 1.38170 * 119.99489 * 89.17990 * 4 3 2 6 6 O 1.35671 * 120.21677 * 359.96762 * 5 4 3 7 7 C 1.41434 * 119.56850 * 180.22428 * 5 4 3 8 8 C 1.41012 * 120.21830 * 179.76207 * 7 5 4 9 9 H 1.07998 * 120.00439 * 25.18292 * 8 7 5 10 10 C 1.39867 * 119.99885 * 205.17779 * 8 7 5 11 11 N 1.30933 * 120.00170 * 17.34944 * 10 8 7 12 12 Si 1.86794 * 119.99825 * 197.35130 * 10 8 7 13 13 H 1.48501 * 109.47191 * 265.08835 * 12 10 8 14 14 H 1.48503 * 109.47517 * 25.09067 * 12 10 8 15 15 H 1.48509 * 109.47351 * 145.08966 * 12 10 8 16 16 C 1.40811 * 119.55794 * 359.49007 * 7 5 4 17 17 C 1.36379 * 119.98109 * 0.25239 * 16 7 5 18 18 Cl 1.73595 * 119.78115 * 180.02562 * 17 16 7 19 19 C 1.38936 * 119.99314 * 268.89001 * 4 3 2 20 20 O 1.35705 * 119.78008 * 0.05180 * 19 4 3 21 21 C 1.42905 * 116.99649 * 266.37928 * 20 19 4 22 22 H 1.08005 * 120.00102 * 180.02562 * 1 2 3 23 23 H 1.07998 * 119.99878 * 359.97438 * 1 2 3 24 24 H 1.07999 * 119.99978 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.46496 * 1.40051 * 3 2 1 26 26 H 1.08998 * 109.47264 * 241.40119 * 3 2 1 27 27 H 0.96699 * 113.99766 * 270.25332 * 6 5 4 28 28 H 0.96994 * 119.99947 * 179.97438 * 11 10 8 29 29 H 1.08007 * 120.01021 * 180.22936 * 16 7 5 30 30 H 1.09000 * 109.46819 * 183.76612 * 21 20 19 31 31 H 1.08999 * 109.47220 * 303.76722 * 21 20 19 32 32 H 1.09004 * 109.47069 * 63.76545 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9557 1.3699 1.2127 5 6 4.2437 0.8734 1.1501 6 8 4.7092 0.3262 -0.0008 7 6 5.0717 0.9346 2.2950 8 6 6.3866 0.4274 2.2478 9 1 6.9099 0.3703 1.3048 10 6 7.0133 -0.0015 3.4224 11 7 6.2993 -0.2560 4.4900 12 14 8.8689 -0.2111 3.4679 13 1 9.2141 -1.6274 3.1848 14 1 9.4914 0.6646 2.4427 15 1 9.3765 0.1629 4.8125 16 6 4.5762 1.5104 3.4807 17 6 3.3038 1.9997 3.5207 18 17 2.6985 2.7091 4.9849 19 6 2.4852 1.9343 2.3918 20 8 1.2211 2.4248 2.4467 21 6 1.0534 3.8177 2.1750 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8499 -0.9353 -0.0004 25 1 1.3554 2.1334 0.0251 26 1 2.6712 1.3738 -0.9023 27 1 4.5479 -0.6242 -0.0778 28 1 6.7339 -0.5539 5.3044 29 1 5.2035 1.5642 4.3582 30 1 0.0082 4.0924 2.3173 31 1 1.6775 4.3982 2.8544 32 1 1.3466 4.0250 1.1458 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380887820.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:55 Heat of formation + Delta-G solvation = -75.390202 kcal Electronic energy + Delta-G solvation = -18392.258710 eV Core-core repulsion = 15343.610180 eV Total energy + Delta-G solvation = -3048.648531 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.83370 -38.79982 -37.46400 -36.64150 -35.95099 -34.89794 -31.61901 -30.63180 -28.28182 -27.08816 -26.14303 -22.72524 -22.52581 -20.67452 -19.11611 -19.06886 -17.79157 -17.32472 -16.91602 -16.30225 -15.91647 -15.61405 -15.26332 -14.96164 -14.43512 -14.25977 -14.00443 -13.66144 -13.28406 -13.14664 -12.93794 -12.63173 -12.36437 -12.34429 -12.13259 -12.06665 -11.67180 -11.61598 -11.01509 -10.96647 -10.65819 -10.09551 -9.28417 -9.13488 -8.74397 -6.41401 0.54532 0.72079 1.36965 1.40485 1.48245 1.53932 1.56641 2.16473 2.45358 3.12520 3.35162 3.95296 4.14309 4.24704 4.36506 4.52968 4.56201 4.63527 4.79207 4.90415 4.92884 5.03894 5.13792 5.21783 5.24270 5.42636 5.65651 5.78999 5.86022 5.94159 6.05550 6.32633 6.62384 6.75018 6.91435 7.29206 8.18883 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.018521 B = 0.007766 C = 0.005913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.468066 B = 3604.373959 C = 4734.221532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.151 4.151 3 C -0.034 4.034 4 C -0.071 4.071 5 C -0.017 4.017 6 O -0.489 6.489 7 C 0.073 3.927 8 C -0.464 4.464 9 H 0.086 0.914 10 C 0.037 3.963 11 N -0.809 5.809 12 Si 0.983 3.017 13 H -0.259 1.259 14 H -0.259 1.259 15 H -0.266 1.266 16 C -0.165 4.165 17 C -0.028 4.028 18 Cl -0.093 7.093 19 C -0.025 4.025 20 O -0.327 6.327 21 C 0.025 3.975 22 H 0.110 0.890 23 H 0.100 0.900 24 H 0.103 0.897 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.375 0.625 28 H 0.294 0.706 29 H 0.118 0.882 30 H 0.110 0.890 31 H 0.032 0.968 32 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.051 1.785 -3.873 6.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.169 4.169 3 C -0.071 4.071 4 C -0.073 4.073 5 C -0.063 4.063 6 O -0.297 6.297 7 C 0.069 3.931 8 C -0.492 4.492 9 H 0.104 0.896 10 C -0.181 4.181 11 N -0.434 5.434 12 Si 0.804 3.196 13 H -0.184 1.184 14 H -0.183 1.183 15 H -0.190 1.190 16 C -0.185 4.185 17 C -0.055 4.055 18 Cl -0.064 7.064 19 C -0.071 4.071 20 O -0.244 6.244 21 C -0.069 4.069 22 H 0.128 0.872 23 H 0.118 0.882 24 H 0.121 0.879 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.230 0.770 28 H 0.105 0.895 29 H 0.136 0.864 30 H 0.128 0.872 31 H 0.051 0.949 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.083 2.246 -3.576 6.608 hybrid contribution 0.840 -0.420 0.675 1.157 sum -4.243 1.825 -2.901 5.454 Atomic orbital electron populations 1.23894 0.95277 1.02430 1.00507 1.22736 0.96356 0.97419 1.00390 1.19423 0.96602 0.96565 0.94468 1.19913 0.93007 1.00071 0.94267 1.18170 0.91362 1.08625 0.88180 1.84656 1.81980 1.26874 1.36220 1.18122 0.94036 0.90662 0.90280 1.19696 0.98166 1.35829 0.95536 0.89576 1.26841 1.05507 0.91749 0.93967 1.69888 1.40011 1.30132 1.03344 0.85159 0.75696 0.79754 0.79040 1.18376 1.18265 1.19043 1.20711 0.94000 1.03356 1.00443 1.21059 0.94812 1.02527 0.87112 1.98246 1.88429 1.82965 1.36761 1.17547 0.87077 1.10692 0.91741 1.86010 1.23141 1.24639 1.90605 1.23113 1.02913 0.81480 0.99399 0.87152 0.88207 0.87862 0.90718 0.90221 0.77013 0.89539 0.86393 0.87200 0.94937 0.93908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.96 14.32 67.79 0.97 -3.99 16 2 C -0.15 -4.71 9.50 25.65 0.24 -4.47 16 3 C -0.03 -1.17 5.34 29.10 0.16 -1.01 16 4 C -0.07 -3.05 5.13 -19.71 -0.10 -3.16 16 5 C -0.02 -0.81 6.71 23.04 0.15 -0.66 16 6 O -0.49 -20.37 11.85 -89.88 -1.06 -21.43 16 7 C 0.07 3.75 5.58 -21.18 -0.12 3.63 16 8 C -0.46 -23.62 8.70 23.34 0.20 -23.42 16 9 H 0.09 4.31 7.65 -2.91 -0.02 4.28 16 10 C 0.04 1.74 5.14 85.22 0.44 2.18 16 11 N -0.81 -40.08 10.98 21.82 0.24 -39.84 16 12 Si 0.98 36.16 29.59 68.60 2.03 38.19 16 13 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 14 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 15 H -0.27 -9.38 7.11 99.48 0.71 -8.68 16 16 C -0.16 -8.47 8.38 22.47 0.19 -8.28 16 17 C -0.03 -1.33 6.29 22.16 0.14 -1.19 16 18 Cl -0.09 -3.84 28.22 -2.72 -0.08 -3.91 16 19 C -0.03 -1.12 5.71 22.77 0.13 -0.99 16 20 O -0.33 -12.83 8.96 -90.26 -0.81 -13.64 16 21 C 0.03 0.78 10.81 113.37 1.23 2.01 16 22 H 0.11 2.51 8.06 -2.91 -0.02 2.49 16 23 H 0.10 2.54 7.83 -2.91 -0.02 2.52 16 24 H 0.10 3.16 8.06 -2.91 -0.02 3.14 16 25 H 0.07 2.44 6.25 -2.39 -0.01 2.42 16 26 H 0.08 2.70 7.55 -2.39 -0.02 2.68 16 27 H 0.38 12.83 9.06 -74.06 -0.67 12.16 16 28 H 0.29 13.13 8.30 -92.71 -0.77 12.36 16 29 H 0.12 6.34 6.20 -2.91 -0.02 6.32 16 30 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.03 1.03 7.94 -2.39 -0.02 1.02 16 32 H 0.04 1.24 7.52 -2.39 -0.02 1.22 16 Total: -1.00 -57.03 295.08 4.43 -52.61 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.48 Total: 27.37 kcal Atomic # 6 Polarization: -42.97 SS G_CDS: 3.63 Total: -39.34 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.24 Total: -39.84 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -1.87 Total: -35.07 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.19 kcal Atomic # 17 Polarization: -3.84 SS G_CDS: -0.08 Total: -3.91 kcal Total: -57.03 4.43 -52.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380887820.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.785 kcal (2) G-P(sol) polarization free energy of solvation -57.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds