Wall clock time and date at job start Mon Mar 30 2020 07:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99744 * 2 1 4 4 H 1.48499 * 109.47338 * 270.00172 * 3 2 1 5 5 H 1.48498 * 109.47157 * 30.00532 * 3 2 1 6 6 H 1.48505 * 109.46985 * 150.00075 * 3 2 1 7 7 C 1.37872 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00131 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99963 * 180.02562 * 7 2 1 10 10 O 1.42905 * 109.47112 * 179.97438 * 9 7 2 11 11 C 1.42902 * 113.99793 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46894 * 180.02562 * 11 10 9 13 13 S 1.81400 * 109.47042 * 180.02562 * 12 11 10 14 14 C 1.76196 * 102.99988 * 179.97438 * 13 12 11 15 15 C 1.38979 * 120.07969 * 180.02562 * 14 13 12 16 16 C 1.38085 * 119.91784 * 180.02562 * 15 14 13 17 17 C 1.38298 * 120.08130 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.91928 * 180.02562 * 17 16 15 19 19 O 1.42905 * 109.46972 * 90.00082 * 18 17 16 20 20 C 1.38306 * 120.16030 * 0.27010 * 17 16 15 21 21 C 1.38080 * 120.07826 * 359.46211 * 20 17 16 22 22 H 0.97000 * 120.00420 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47546 * 59.99715 * 9 7 2 24 24 H 1.08998 * 109.47191 * 299.99207 * 9 7 2 25 25 H 1.08998 * 109.47540 * 59.99706 * 11 10 9 26 26 H 1.09006 * 109.47253 * 299.99608 * 11 10 9 27 27 H 1.08994 * 109.47702 * 59.99843 * 12 11 10 28 28 H 1.09001 * 109.46708 * 299.99200 * 12 11 10 29 29 H 1.08005 * 120.03952 * 359.97438 * 15 14 13 30 30 H 1.08001 * 119.95566 * 179.97438 * 16 15 14 31 31 H 1.09000 * 109.47247 * 330.00017 * 18 17 16 32 32 H 1.09001 * 109.47358 * 209.99444 * 18 17 16 33 33 H 0.96696 * 114.00036 * 179.97438 * 19 18 17 34 34 H 1.07998 * 119.95959 * 179.72792 * 20 17 16 35 35 H 1.07998 * 120.03744 * 180.27274 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 8 3.9878 -2.5413 -0.0001 11 6 5.4124 -2.6541 -0.0001 12 6 5.8069 -4.1324 -0.0009 13 16 7.6152 -4.2757 -0.0002 14 6 7.8748 -6.0184 -0.0004 15 6 9.1669 -6.5302 0.0005 16 6 9.3665 -7.8965 -0.0002 17 6 8.2825 -8.7554 -0.0013 18 6 8.5045 -10.2459 -0.0015 19 8 8.5735 -10.7174 1.3458 20 6 6.9952 -8.2497 -0.0074 21 6 6.7880 -6.8845 -0.0011 22 1 -0.4851 0.8400 -0.0004 23 1 3.8745 -0.6807 0.8905 24 1 3.8751 -0.6797 -0.8895 25 1 5.8152 -2.1706 0.8898 26 1 5.8151 -2.1705 -0.8902 27 1 5.4041 -4.6156 -0.8910 28 1 5.4042 -4.6163 0.8889 29 1 10.0139 -5.8600 0.0010 30 1 10.3703 -8.2949 0.0001 31 1 9.4387 -10.4741 -0.5146 32 1 7.6781 -10.7363 -0.5161 33 1 8.7151 -11.6709 1.4220 34 1 6.1511 -8.9233 -0.0127 35 1 5.7825 -6.4903 -0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385272900.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:02 Heat of formation + Delta-G solvation = -76.369074 kcal Electronic energy + Delta-G solvation = -16692.822248 eV Core-core repulsion = 13782.008071 eV Total energy + Delta-G solvation = -2910.814177 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.53024 -37.15670 -36.91655 -32.86531 -32.11516 -31.58932 -30.82600 -27.78744 -26.43254 -23.51229 -22.26327 -21.92379 -21.68170 -17.85080 -17.79777 -16.93067 -16.37294 -15.89928 -15.71676 -15.68352 -14.61503 -14.60668 -14.17944 -13.90473 -13.70239 -13.62603 -13.17632 -12.99718 -12.49751 -12.46781 -11.60941 -11.51817 -11.37260 -11.11566 -10.85238 -10.75183 -10.46267 -10.29708 -9.91240 -9.85706 -9.26567 -9.20527 -8.97042 -8.56538 -7.52070 -6.16459 -4.16534 0.87913 1.15586 1.32263 2.29744 3.22080 3.29343 3.30435 3.32536 4.12552 4.31336 4.48130 4.55451 4.65021 4.76176 4.87674 4.97156 5.00019 5.14552 5.14745 5.31696 5.39012 5.49827 5.56092 5.76375 5.89004 5.93193 6.02815 6.05497 6.30134 6.51275 6.63758 6.91264 7.22015 7.51625 7.87808 8.56894 8.93445 9.41806 10.96345 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.043580 B = 0.002840 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.344391 B = 9855.908203 C =10396.986022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.083 0.917 9 C 0.170 3.830 10 O -0.377 6.377 11 C 0.076 3.924 12 C -0.105 4.105 13 S -0.106 6.106 14 C -0.071 4.071 15 C -0.106 4.106 16 C -0.082 4.082 17 C -0.106 4.106 18 C 0.119 3.881 19 O -0.568 6.568 20 C -0.077 4.077 21 C -0.135 4.135 22 H 0.267 0.733 23 H 0.006 0.994 24 H 0.002 0.998 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.129 0.871 30 H 0.127 0.873 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.379 0.621 34 H 0.126 0.874 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.371 -18.147 -0.948 27.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.101 0.899 9 C 0.095 3.905 10 O -0.297 6.297 11 C -0.003 4.003 12 C -0.254 4.254 13 S 0.139 5.861 14 C -0.184 4.184 15 C -0.130 4.130 16 C -0.101 4.101 17 C -0.109 4.109 18 C 0.042 3.958 19 O -0.373 6.373 20 C -0.097 4.097 21 C -0.159 4.159 22 H 0.077 0.923 23 H 0.024 0.976 24 H 0.019 0.981 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.226 0.774 34 H 0.144 0.856 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 20.703 -16.505 -0.824 26.490 hybrid contribution -0.343 -0.471 -0.167 0.607 sum 20.359 -16.976 -0.991 26.527 Atomic orbital electron populations 1.69869 1.06062 1.27216 1.50010 1.24761 0.94833 0.98798 0.94513 0.86845 0.80373 0.83668 0.78862 1.19830 1.20665 1.19032 1.20857 0.88064 0.95423 1.51669 0.89906 1.20659 0.96266 0.78902 0.94687 1.87902 1.16375 1.30247 1.95182 1.21845 0.85682 0.92154 1.00636 1.23591 0.92843 1.02025 1.06900 1.85349 1.08217 1.00820 1.91722 1.21842 0.96603 0.96890 1.03067 1.20730 0.95061 0.95235 1.01935 1.20922 0.98521 0.92510 0.98192 1.19600 0.93540 0.94365 1.03421 1.20955 1.00208 0.90871 0.83773 1.86595 1.96178 1.28166 1.26411 1.20954 0.96480 0.94772 0.97509 1.21293 0.98307 0.93570 1.02733 0.92255 0.97625 0.98071 0.93159 0.93181 0.88458 0.88453 0.85260 0.85555 0.92756 0.92698 0.77377 0.85563 0.85124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.44 13.96 55.43 0.77 -26.67 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 3 Si 0.88 21.26 27.47 -169.99 -4.67 16.60 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.17 6.54 56.52 0.37 -5.81 16 7 C -0.52 -15.48 9.99 -34.44 -0.34 -15.82 16 8 H 0.08 2.68 8.06 -52.48 -0.42 2.25 16 9 C 0.17 4.30 4.76 36.00 0.17 4.48 16 10 O -0.38 -8.69 10.33 -35.23 -0.36 -9.05 16 11 C 0.08 1.33 5.95 37.16 0.22 1.55 16 12 C -0.11 -1.53 4.70 37.16 0.17 -1.36 16 13 S -0.11 -1.39 21.92 -107.50 -2.36 -3.75 16 14 C -0.07 -0.88 6.11 -39.04 -0.24 -1.12 16 15 C -0.11 -1.15 9.79 -39.36 -0.39 -1.54 16 16 C -0.08 -0.80 9.69 -39.62 -0.38 -1.18 16 17 C -0.11 -1.06 5.51 -104.58 -0.58 -1.64 16 18 C 0.12 0.87 7.17 36.01 0.26 1.13 16 19 O -0.57 -4.66 13.64 -35.23 -0.48 -5.14 16 20 C -0.08 -0.83 9.69 -39.61 -0.38 -1.21 16 21 C -0.14 -1.62 9.36 -39.37 -0.37 -1.99 16 22 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 23 H 0.01 0.15 7.20 -51.93 -0.37 -0.22 16 24 H 0.00 0.04 7.57 -51.93 -0.39 -0.35 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.10 1.37 7.75 -51.93 -0.40 0.97 16 28 H 0.10 1.39 7.75 -51.92 -0.40 0.99 16 29 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 30 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.05 0.30 8.08 -51.93 -0.42 -0.12 16 32 H 0.05 0.32 8.08 -51.93 -0.42 -0.10 16 33 H 0.38 1.18 9.12 45.56 0.42 1.59 16 34 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.13 1.52 5.88 -52.49 -0.31 1.21 16 LS Contribution 314.53 15.07 4.74 4.74 Total: -1.00 -33.46 314.53 -8.32 -41.78 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -4.01 Total: -1.85 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -1.95 Total: -16.65 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.77 Total: -26.67 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.84 Total: -14.20 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.60 kcal Atomic # 16 Polarization: -1.39 SS G_CDS: -2.36 Total: -3.75 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.46 -8.32 -41.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385272900.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.589 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds