Wall clock time and date at job start Mon Mar 30 2020 07:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99744 * 2 1 4 4 H 1.48499 * 109.47338 * 270.00172 * 3 2 1 5 5 H 1.48498 * 109.47157 * 30.00532 * 3 2 1 6 6 H 1.48505 * 109.46985 * 150.00075 * 3 2 1 7 7 C 1.37872 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00131 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99963 * 180.02562 * 7 2 1 10 10 O 1.42905 * 109.47112 * 179.97438 * 9 7 2 11 11 C 1.42902 * 113.99793 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46894 * 180.02562 * 11 10 9 13 13 S 1.81400 * 109.47042 * 180.02562 * 12 11 10 14 14 C 1.76196 * 102.99988 * 179.97438 * 13 12 11 15 15 C 1.38979 * 120.07969 * 180.02562 * 14 13 12 16 16 C 1.38085 * 119.91784 * 180.02562 * 15 14 13 17 17 C 1.38298 * 120.08130 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.91928 * 180.02562 * 17 16 15 19 19 O 1.42905 * 109.46972 * 90.00082 * 18 17 16 20 20 C 1.38306 * 120.16030 * 0.27010 * 17 16 15 21 21 C 1.38080 * 120.07826 * 359.46211 * 20 17 16 22 22 H 0.97000 * 120.00420 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47546 * 59.99715 * 9 7 2 24 24 H 1.08998 * 109.47191 * 299.99207 * 9 7 2 25 25 H 1.08998 * 109.47540 * 59.99706 * 11 10 9 26 26 H 1.09006 * 109.47253 * 299.99608 * 11 10 9 27 27 H 1.08994 * 109.47702 * 59.99843 * 12 11 10 28 28 H 1.09001 * 109.46708 * 299.99200 * 12 11 10 29 29 H 1.08005 * 120.03952 * 359.97438 * 15 14 13 30 30 H 1.08001 * 119.95566 * 179.97438 * 16 15 14 31 31 H 1.09000 * 109.47247 * 330.00017 * 18 17 16 32 32 H 1.09001 * 109.47358 * 209.99444 * 18 17 16 33 33 H 0.96696 * 114.00036 * 179.97438 * 19 18 17 34 34 H 1.07998 * 119.95959 * 179.72792 * 20 17 16 35 35 H 1.07998 * 120.03744 * 180.27274 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 8 3.9878 -2.5413 -0.0001 11 6 5.4124 -2.6541 -0.0001 12 6 5.8069 -4.1324 -0.0009 13 16 7.6152 -4.2757 -0.0002 14 6 7.8748 -6.0184 -0.0004 15 6 9.1669 -6.5302 0.0005 16 6 9.3665 -7.8965 -0.0002 17 6 8.2825 -8.7554 -0.0013 18 6 8.5045 -10.2459 -0.0015 19 8 8.5735 -10.7174 1.3458 20 6 6.9952 -8.2497 -0.0074 21 6 6.7880 -6.8845 -0.0011 22 1 -0.4851 0.8400 -0.0004 23 1 3.8745 -0.6807 0.8905 24 1 3.8751 -0.6797 -0.8895 25 1 5.8152 -2.1706 0.8898 26 1 5.8151 -2.1705 -0.8902 27 1 5.4041 -4.6156 -0.8910 28 1 5.4042 -4.6163 0.8889 29 1 10.0139 -5.8600 0.0010 30 1 10.3703 -8.2949 0.0001 31 1 9.4387 -10.4741 -0.5146 32 1 7.6781 -10.7363 -0.5161 33 1 8.7151 -11.6709 1.4220 34 1 6.1511 -8.9233 -0.0127 35 1 5.7825 -6.4903 -0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385272900.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:01 Heat of formation + Delta-G solvation = -99.773907 kcal Electronic energy + Delta-G solvation = -16693.837158 eV Core-core repulsion = 13782.008071 eV Total energy + Delta-G solvation = -2911.829087 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.29542 -38.88055 -37.50259 -34.99873 -33.09672 -32.64868 -31.88569 -29.81078 -27.10877 -24.66167 -24.00412 -23.27148 -22.46504 -19.17090 -18.63573 -18.34718 -17.79414 -17.17094 -16.83985 -16.63923 -16.44114 -15.56497 -15.17335 -15.08748 -14.80727 -14.59171 -14.56238 -14.24883 -14.02547 -13.39632 -13.14947 -12.98438 -12.54605 -12.48621 -12.32145 -12.06899 -11.85043 -11.46582 -11.28953 -10.96905 -10.96162 -10.71833 -10.49782 -10.02017 -8.49107 -8.40242 -6.49276 0.05603 0.26923 0.33992 1.26045 1.33000 1.35896 1.46731 2.27469 2.54703 2.92261 3.03838 3.57904 3.74676 3.75905 3.88744 3.92694 4.13675 4.25081 4.27293 4.36768 4.47896 4.52771 4.56355 4.63318 4.70051 4.74875 4.93720 5.00050 5.21518 5.23911 5.37608 5.53454 5.85239 5.86178 6.53336 6.62192 6.92742 7.14863 8.76695 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.043580 B = 0.002840 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.344391 B = 9855.908203 C =10396.986022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.244 1.244 7 C -0.550 4.550 8 H 0.031 0.969 9 C 0.179 3.821 10 O -0.403 6.403 11 C 0.070 3.930 12 C -0.101 4.101 13 S -0.099 6.099 14 C -0.092 4.092 15 C -0.111 4.111 16 C -0.083 4.083 17 C -0.111 4.111 18 C 0.119 3.881 19 O -0.592 6.592 20 C -0.088 4.088 21 C -0.151 4.151 22 H 0.274 0.726 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.143 0.857 30 H 0.154 0.846 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.400 0.600 34 H 0.139 0.861 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.167 -18.146 -1.088 29.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.168 1.168 7 C -0.587 4.587 8 H 0.050 0.950 9 C 0.103 3.897 10 O -0.323 6.323 11 C -0.007 4.007 12 C -0.249 4.249 13 S 0.144 5.856 14 C -0.205 4.205 15 C -0.134 4.134 16 C -0.102 4.102 17 C -0.114 4.114 18 C 0.042 3.958 19 O -0.401 6.401 20 C -0.108 4.108 21 C -0.175 4.175 22 H 0.083 0.917 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.161 0.839 30 H 0.171 0.829 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.251 0.749 34 H 0.157 0.843 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 23.516 -16.558 -0.964 28.777 hybrid contribution -1.201 -0.691 -0.116 1.390 sum 22.315 -17.248 -1.080 28.225 Atomic orbital electron populations 1.70023 1.08262 1.28918 1.50737 1.25848 0.95837 1.03464 0.93321 0.85605 0.79470 0.77375 0.79910 1.18240 1.19746 1.16790 1.21136 0.90792 0.93986 1.52827 0.95046 1.20393 0.93392 0.80312 0.95573 1.87847 1.20013 1.29064 1.95385 1.22089 0.82644 0.94326 1.01690 1.23425 0.94588 1.00059 1.06835 1.85186 1.05953 1.02108 1.92304 1.21936 0.97493 0.96178 1.04872 1.20990 0.94792 0.96194 1.01472 1.21279 0.99859 0.91994 0.97103 1.20047 0.93185 0.96291 1.01886 1.21030 1.01986 0.89016 0.83789 1.86523 1.96349 1.30337 1.26910 1.21203 0.97667 0.94445 0.97506 1.21373 0.98101 0.94400 1.03577 0.91673 0.96577 0.96576 0.92114 0.91927 0.88497 0.88733 0.83921 0.82877 0.90500 0.91348 0.74930 0.84291 0.85736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.14 13.96 21.45 0.30 -58.84 16 2 C 0.01 0.81 5.47 84.65 0.46 1.27 16 3 Si 0.96 43.09 27.47 68.60 1.88 44.98 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 7 C -0.55 -33.55 9.99 25.60 0.26 -33.29 16 8 H 0.03 2.16 8.06 -2.91 -0.02 2.13 16 9 C 0.18 8.98 4.76 71.23 0.34 9.32 16 10 O -0.40 -18.72 10.33 -148.98 -1.54 -20.26 16 11 C 0.07 2.42 5.95 71.98 0.43 2.85 16 12 C -0.10 -2.93 4.70 71.98 0.34 -2.59 16 13 S -0.10 -2.53 21.92 -56.49 -1.24 -3.77 16 14 C -0.09 -2.22 6.11 22.62 0.14 -2.08 16 15 C -0.11 -2.24 9.79 22.41 0.22 -2.02 16 16 C -0.08 -1.43 9.69 22.25 0.22 -1.21 16 17 C -0.11 -2.01 5.51 -19.83 -0.11 -2.12 16 18 C 0.12 1.41 7.17 71.24 0.51 1.92 16 19 O -0.59 -8.32 13.64 -148.98 -2.03 -10.35 16 20 C -0.09 -1.82 9.69 22.25 0.22 -1.60 16 21 C -0.15 -3.60 9.36 22.41 0.21 -3.39 16 22 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 23 H 0.02 0.79 7.20 -2.39 -0.02 0.77 16 24 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 25 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 27 H 0.10 2.78 7.75 -2.39 -0.02 2.76 16 28 H 0.09 2.75 7.75 -2.39 -0.02 2.74 16 29 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 30 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 31 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 32 H 0.07 0.62 8.08 -2.39 -0.02 0.60 16 33 H 0.40 1.51 9.12 -74.06 -0.68 0.83 16 34 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 35 H 0.12 3.00 5.88 -2.91 -0.02 2.98 16 Total: -1.00 -73.59 314.53 0.96 -72.63 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.36 Total: 8.55 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 3.22 Total: -32.95 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: 0.30 Total: -58.84 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -3.57 Total: -30.61 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.88 Total: 44.98 kcal Atomic # 16 Polarization: -2.53 SS G_CDS: -1.24 Total: -3.77 kcal Total: -73.59 0.96 -72.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385272900.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.141 kcal (2) G-P(sol) polarization free energy of solvation -73.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds