Wall clock time and date at job start Mon Mar 30 2020 08:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76202 * 102.99755 * 2 1 4 4 C 1.38927 * 120.02494 * 180.02562 * 3 2 1 5 5 C 1.38090 * 119.97272 * 180.02562 * 4 3 2 6 6 C 1.38704 * 120.02830 * 0.02562 * 5 4 3 7 7 O 1.35999 * 119.97676 * 179.97438 * 6 5 4 8 8 C 1.42905 * 117.00309 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47264 * 179.97438 * 8 7 6 10 10 O 1.42899 * 109.47457 * 64.99865 * 9 8 7 11 11 C 1.42897 * 114.00314 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.47146 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00154 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00057 * 180.02562 * 12 11 10 15 15 N 1.31520 * 120.00216 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 120.00376 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47012 * 59.99412 * 16 14 12 18 18 H 1.48498 * 109.47125 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46738 * 299.99919 * 16 14 12 20 20 C 1.38715 * 120.04960 * 0.22869 * 6 5 4 21 21 C 1.38093 * 120.02492 * 359.49812 * 20 6 5 22 22 H 1.08998 * 109.47739 * 300.00325 * 1 2 3 23 23 H 1.09005 * 109.47248 * 60.00674 * 1 2 3 24 24 H 1.09008 * 109.47159 * 180.02562 * 1 2 3 25 25 H 1.08000 * 120.00979 * 359.97438 * 4 3 2 26 26 H 1.07999 * 119.98020 * 179.97438 * 5 4 3 27 27 H 1.09001 * 109.47103 * 300.00173 * 8 7 6 28 28 H 1.09004 * 109.47054 * 59.99677 * 8 7 6 29 29 H 1.09004 * 109.46881 * 185.00370 * 9 8 7 30 30 H 1.09002 * 109.47196 * 304.99885 * 9 8 7 31 31 H 1.08999 * 109.46966 * 300.00604 * 11 10 9 32 32 H 1.09004 * 109.46572 * 60.00010 * 11 10 9 33 33 H 0.96998 * 120.00659 * 180.02562 * 15 14 12 34 34 H 1.08003 * 119.98879 * 179.74448 * 20 6 5 35 35 H 1.07997 * 120.01367 * 180.25479 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2102 1.7169 0.0000 4 6 3.5386 2.1237 -0.0005 5 6 3.8480 3.4695 0.0000 6 6 2.8331 4.4150 0.0016 7 8 3.1390 5.7401 0.0027 8 6 2.0442 6.6587 0.0037 9 6 2.5807 8.0916 0.0055 10 8 3.2811 8.3395 -1.2152 11 6 3.8247 9.6572 -1.3161 12 6 4.5368 9.8070 -2.6357 13 1 4.5705 8.9790 -3.3283 14 6 5.1454 11.0012 -2.9590 15 7 5.1040 12.0098 -2.1158 16 14 6.0275 11.1874 -4.5951 17 1 5.0659 10.9629 -5.7042 18 1 6.5926 12.5566 -4.6998 19 1 7.1248 10.1905 -4.6819 20 6 1.5064 4.0100 0.0075 21 6 1.1946 2.6647 0.0012 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 4.3289 1.3877 -0.0005 26 1 4.8806 3.7859 0.0000 27 1 1.4354 6.4994 -0.8862 28 1 1.4358 6.4978 0.8937 29 1 1.7493 8.7907 0.0959 30 1 3.2601 8.2241 0.8475 31 1 3.0189 10.3884 -1.2533 32 1 4.5298 9.8226 -0.5015 33 1 5.5318 12.8501 -2.3433 34 1 0.7170 4.7470 0.0129 35 1 0.1616 2.3496 0.0017 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385296725.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:49 Heat of formation + Delta-G solvation = -65.317420 kcal Electronic energy + Delta-G solvation = -17106.952510 eV Core-core repulsion = 14196.617568 eV Total energy + Delta-G solvation = -2910.334941 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.06652 -37.64809 -36.42272 -32.78857 -31.59936 -30.62273 -29.63173 -28.80544 -26.91622 -23.59681 -22.66671 -22.34040 -21.41309 -18.45339 -17.49783 -16.51025 -16.22224 -15.88844 -15.28514 -14.96764 -14.78662 -14.46613 -14.26240 -14.06301 -13.82551 -13.68385 -13.03110 -12.81092 -12.66419 -12.19010 -11.88671 -11.61068 -11.21736 -11.04029 -10.82205 -10.79849 -10.57698 -10.47520 -10.05530 -9.25448 -9.15263 -9.07071 -8.87857 -8.21753 -7.35250 -6.12023 -4.13834 1.17799 1.18854 1.33053 2.19857 3.30394 3.32547 3.34875 3.39167 3.57791 4.31897 4.58291 4.67462 4.72040 4.72694 4.75450 5.04503 5.16203 5.24424 5.26355 5.34522 5.36443 5.44150 5.77781 5.80500 5.85298 5.97481 6.08483 6.14788 6.24884 6.57757 7.04223 7.38921 7.48487 7.77856 8.12172 8.52053 8.98525 9.50940 10.99494 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.036315 B = 0.002930 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.854375 B = 9553.761197 C = 9933.331024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.129 6.129 3 C -0.132 4.132 4 C -0.058 4.058 5 C -0.136 4.136 6 C 0.141 3.859 7 O -0.296 6.296 8 C 0.064 3.936 9 C 0.062 3.938 10 O -0.390 6.390 11 C 0.195 3.805 12 C -0.516 4.516 13 H 0.066 0.934 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.909 3.091 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.196 4.196 21 C -0.090 4.090 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.106 0.894 25 H 0.133 0.867 26 H 0.139 0.861 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.006 0.994 32 H 0.007 0.993 33 H 0.265 0.735 34 H 0.132 0.868 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.978 -20.761 7.069 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.111 5.889 3 C -0.244 4.244 4 C -0.081 4.081 5 C -0.156 4.156 6 C 0.092 3.908 7 O -0.209 6.209 8 C -0.011 4.011 9 C -0.015 4.015 10 O -0.310 6.310 11 C 0.121 3.879 12 C -0.554 4.554 13 H 0.085 0.915 14 C -0.145 4.145 15 N -0.539 5.539 16 Si 0.736 3.264 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.216 4.216 21 C -0.114 4.114 22 H 0.101 0.899 23 H 0.102 0.898 24 H 0.124 0.876 25 H 0.151 0.849 26 H 0.157 0.843 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.024 0.976 32 H 0.025 0.975 33 H 0.074 0.926 34 H 0.150 0.850 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.068 -21.633 6.941 24.462 hybrid contribution -0.721 1.638 -0.570 1.878 sum -9.789 -19.995 6.372 23.156 Atomic orbital electron populations 1.23632 0.94994 1.06884 1.05573 1.85346 1.06234 1.03713 1.93644 1.21446 0.96598 0.96069 1.10272 1.20542 0.94295 0.95034 0.98188 1.20440 0.99221 0.90810 1.05137 1.19156 0.92973 0.84255 0.94381 1.86280 1.35053 1.12196 1.87349 1.22987 0.88455 0.88397 1.01241 1.22279 0.96721 0.91924 0.90602 1.87925 1.72202 1.36092 1.34752 1.20230 0.92553 0.77604 0.97549 1.21013 1.33793 0.98582 1.01995 0.91547 1.24950 0.96321 0.95325 0.97884 1.69950 1.44524 1.03375 1.36003 0.86378 0.79845 0.77111 0.83053 1.20003 1.21128 1.19939 1.21185 0.95591 0.96581 1.08250 1.20898 0.98078 0.92320 1.00093 0.89885 0.89818 0.87586 0.84929 0.84327 0.91248 0.91310 0.92117 0.93217 0.97647 0.97510 0.92566 0.85043 0.85853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.15 101.05 0.92 0.02 16 2 S -0.13 -1.25 22.56 -107.50 -2.43 -3.67 16 3 C -0.13 -1.52 6.11 -39.07 -0.24 -1.76 16 4 C -0.06 -0.68 9.79 -39.38 -0.39 -1.07 16 5 C -0.14 -1.81 9.98 -39.46 -0.39 -2.21 16 6 C 0.14 2.05 6.69 -39.23 -0.26 1.79 16 7 O -0.30 -5.03 10.10 -24.58 -0.25 -5.27 16 8 C 0.06 0.95 5.12 37.16 0.19 1.14 16 9 C 0.06 1.13 6.32 37.16 0.23 1.37 16 10 O -0.39 -9.54 10.29 -40.08 -0.41 -9.96 16 11 C 0.19 5.38 5.69 36.00 0.20 5.58 16 12 C -0.52 -15.38 9.43 -34.44 -0.32 -15.70 16 13 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 16 Si 0.91 22.02 29.54 -169.99 -5.02 17.00 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 C -0.20 -2.41 9.03 -39.46 -0.36 -2.77 16 21 C -0.09 -1.00 9.36 -39.38 -0.37 -1.37 16 22 H 0.08 0.47 7.74 -51.92 -0.40 0.07 16 23 H 0.08 0.50 7.75 -51.92 -0.40 0.10 16 24 H 0.11 0.49 8.14 -51.92 -0.42 0.07 16 25 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 26 H 0.14 1.74 8.06 -52.49 -0.42 1.31 16 27 H 0.07 0.99 7.67 -51.93 -0.40 0.59 16 28 H 0.07 0.78 7.65 -51.93 -0.40 0.38 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.13 1.38 6.29 -52.48 -0.33 1.05 16 35 H 0.12 1.06 5.87 -52.49 -0.31 0.75 16 LS Contribution 315.13 15.07 4.75 4.75 Total: -1.00 -32.77 315.13 -8.24 -41.00 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -4.74 Total: -4.17 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -0.87 Total: -13.42 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.74 Total: -26.26 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.66 Total: -15.23 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: -1.25 SS G_CDS: -2.43 Total: -3.67 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.77 -8.24 -41.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385296725.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.314 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds