Wall clock time and date at job start Mon Mar 30 2020 08:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76202 * 102.99755 * 2 1 4 4 C 1.38927 * 120.02494 * 180.02562 * 3 2 1 5 5 C 1.38090 * 119.97272 * 180.02562 * 4 3 2 6 6 C 1.38704 * 120.02830 * 0.02562 * 5 4 3 7 7 O 1.35999 * 119.97676 * 179.97438 * 6 5 4 8 8 C 1.42905 * 117.00309 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47264 * 179.97438 * 8 7 6 10 10 O 1.42899 * 109.47457 * 64.99865 * 9 8 7 11 11 C 1.42897 * 114.00314 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.47146 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00154 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00057 * 180.02562 * 12 11 10 15 15 N 1.31520 * 120.00216 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 120.00376 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47012 * 59.99412 * 16 14 12 18 18 H 1.48498 * 109.47125 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46738 * 299.99919 * 16 14 12 20 20 C 1.38715 * 120.04960 * 0.22869 * 6 5 4 21 21 C 1.38093 * 120.02492 * 359.49812 * 20 6 5 22 22 H 1.08998 * 109.47739 * 300.00325 * 1 2 3 23 23 H 1.09005 * 109.47248 * 60.00674 * 1 2 3 24 24 H 1.09008 * 109.47159 * 180.02562 * 1 2 3 25 25 H 1.08000 * 120.00979 * 359.97438 * 4 3 2 26 26 H 1.07999 * 119.98020 * 179.97438 * 5 4 3 27 27 H 1.09001 * 109.47103 * 300.00173 * 8 7 6 28 28 H 1.09004 * 109.47054 * 59.99677 * 8 7 6 29 29 H 1.09004 * 109.46881 * 185.00370 * 9 8 7 30 30 H 1.09002 * 109.47196 * 304.99885 * 9 8 7 31 31 H 1.08999 * 109.46966 * 300.00604 * 11 10 9 32 32 H 1.09004 * 109.46572 * 60.00010 * 11 10 9 33 33 H 0.96998 * 120.00659 * 180.02562 * 15 14 12 34 34 H 1.08003 * 119.98879 * 179.74448 * 20 6 5 35 35 H 1.07997 * 120.01367 * 180.25479 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2102 1.7169 0.0000 4 6 3.5386 2.1237 -0.0005 5 6 3.8480 3.4695 0.0000 6 6 2.8331 4.4150 0.0016 7 8 3.1390 5.7401 0.0027 8 6 2.0442 6.6587 0.0037 9 6 2.5807 8.0916 0.0055 10 8 3.2811 8.3395 -1.2152 11 6 3.8247 9.6572 -1.3161 12 6 4.5368 9.8070 -2.6357 13 1 4.5705 8.9790 -3.3283 14 6 5.1454 11.0012 -2.9590 15 7 5.1040 12.0098 -2.1158 16 14 6.0275 11.1874 -4.5951 17 1 5.0659 10.9629 -5.7042 18 1 6.5926 12.5566 -4.6998 19 1 7.1248 10.1905 -4.6819 20 6 1.5064 4.0100 0.0075 21 6 1.1946 2.6647 0.0012 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 4.3289 1.3877 -0.0005 26 1 4.8806 3.7859 0.0000 27 1 1.4354 6.4994 -0.8862 28 1 1.4358 6.4978 0.8937 29 1 1.7493 8.7907 0.0959 30 1 3.2601 8.2241 0.8475 31 1 3.0189 10.3884 -1.2533 32 1 4.5298 9.8226 -0.5015 33 1 5.5318 12.8501 -2.3433 34 1 0.7170 4.7470 0.0129 35 1 0.1616 2.3496 0.0017 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385296725.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:49 Heat of formation + Delta-G solvation = -85.229493 kcal Electronic energy + Delta-G solvation = -17107.815962 eV Core-core repulsion = 14196.617568 eV Total energy + Delta-G solvation = -2911.198393 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.10776 -38.94291 -38.00532 -34.97116 -32.57600 -31.79306 -30.66363 -29.59778 -28.91842 -24.87103 -24.40058 -23.62836 -22.56448 -19.45764 -18.70316 -18.37710 -17.75552 -17.02797 -16.77042 -16.35427 -15.99856 -15.76608 -15.69639 -15.15003 -14.66640 -14.65141 -14.31919 -13.85058 -13.67186 -13.49126 -13.32090 -12.99107 -12.88916 -12.68376 -12.49606 -12.11826 -12.06904 -11.77967 -11.32476 -11.20086 -10.90944 -10.28949 -10.15816 -10.02194 -8.34260 -8.18274 -6.46847 0.23073 0.26151 0.61904 1.38766 1.43588 1.51838 1.52077 2.21632 2.33149 2.62989 2.99381 3.08109 3.71015 3.83943 3.98752 4.11289 4.20828 4.28892 4.29380 4.34741 4.42926 4.44885 4.57831 4.67933 4.83061 4.86194 4.93666 5.02315 5.14972 5.22161 5.28756 5.51867 5.64443 5.92995 6.41225 6.50425 6.77742 7.24884 8.77779 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.036315 B = 0.002930 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.854375 B = 9553.761197 C = 9933.331024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.148 6.148 3 C -0.135 4.135 4 C -0.064 4.064 5 C -0.152 4.152 6 C 0.111 3.889 7 O -0.330 6.330 8 C 0.069 3.931 9 C 0.050 3.950 10 O -0.410 6.410 11 C 0.209 3.791 12 C -0.553 4.553 13 H 0.059 0.941 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.983 3.017 17 H -0.264 1.264 18 H -0.273 1.273 19 H -0.267 1.267 20 C -0.195 4.195 21 C -0.091 4.091 22 H 0.093 0.907 23 H 0.091 0.909 24 H 0.125 0.875 25 H 0.147 0.853 26 H 0.134 0.866 27 H 0.074 0.926 28 H 0.111 0.889 29 H 0.083 0.917 30 H 0.048 0.952 31 H -0.006 1.006 32 H -0.014 1.014 33 H 0.272 0.728 34 H 0.150 0.850 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.316 -22.072 6.546 25.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.092 5.908 3 C -0.247 4.247 4 C -0.087 4.087 5 C -0.172 4.172 6 C 0.064 3.936 7 O -0.245 6.245 8 C -0.005 4.005 9 C -0.027 4.027 10 O -0.330 6.330 11 C 0.134 3.866 12 C -0.590 4.590 13 H 0.077 0.923 14 C -0.191 4.191 15 N -0.568 5.568 16 Si 0.805 3.195 17 H -0.189 1.189 18 H -0.197 1.197 19 H -0.192 1.192 20 C -0.215 4.215 21 C -0.114 4.114 22 H 0.112 0.888 23 H 0.110 0.890 24 H 0.144 0.856 25 H 0.164 0.836 26 H 0.152 0.848 27 H 0.092 0.908 28 H 0.128 0.872 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.011 0.989 32 H 0.003 0.997 33 H 0.081 0.919 34 H 0.168 0.832 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.424 -22.971 6.438 26.034 hybrid contribution -0.394 1.909 -0.315 1.974 sum -10.818 -21.062 6.123 24.457 Atomic orbital electron populations 1.23772 0.91735 1.08516 1.06470 1.85448 1.09859 1.02141 1.93324 1.21731 0.96585 0.97470 1.08962 1.20739 0.95303 0.94624 0.97999 1.20579 0.99149 0.91587 1.05874 1.19393 0.94365 0.83319 0.96562 1.86208 1.36354 1.13602 1.88294 1.23010 0.88092 0.85972 1.03442 1.22680 0.96899 0.95044 0.88043 1.87868 1.72899 1.34155 1.38082 1.19850 0.91619 0.78991 0.96173 1.21360 1.35476 0.99157 1.03040 0.92287 1.25955 0.96573 0.94548 1.02044 1.70050 1.44831 1.03937 1.37994 0.85243 0.78643 0.77694 0.77894 1.18907 1.19719 1.19215 1.21411 0.94980 0.97680 1.07428 1.21238 0.99419 0.91679 0.99075 0.88799 0.89045 0.85622 0.83560 0.84790 0.90764 0.87162 0.89917 0.93414 0.98858 0.99654 0.91926 0.83211 0.83021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.15 113.37 1.04 -0.24 16 2 S -0.15 -2.56 22.56 -56.49 -1.27 -3.83 16 3 C -0.14 -2.91 6.11 22.60 0.14 -2.77 16 4 C -0.06 -1.48 9.79 22.40 0.22 -1.27 16 5 C -0.15 -4.14 9.98 22.35 0.22 -3.92 16 6 C 0.11 3.23 6.69 22.50 0.15 3.38 16 7 O -0.33 -11.36 10.10 -88.91 -0.90 -12.26 16 8 C 0.07 2.00 5.12 71.98 0.37 2.36 16 9 C 0.05 1.83 6.32 71.98 0.45 2.28 16 10 O -0.41 -20.62 10.29 -144.35 -1.49 -22.11 16 11 C 0.21 11.93 5.69 71.23 0.41 12.33 16 12 C -0.55 -33.72 9.43 25.60 0.24 -33.48 16 13 H 0.06 3.59 7.81 -2.91 -0.02 3.56 16 14 C 0.01 0.44 5.46 84.65 0.46 0.90 16 15 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 16 Si 0.98 44.98 29.54 68.60 2.03 47.00 16 17 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 C -0.19 -4.48 9.03 22.35 0.20 -4.28 16 21 C -0.09 -1.80 9.36 22.40 0.21 -1.59 16 22 H 0.09 0.72 7.74 -2.39 -0.02 0.70 16 23 H 0.09 0.76 7.75 -2.39 -0.02 0.74 16 24 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 26 H 0.13 3.59 8.06 -2.91 -0.02 3.56 16 27 H 0.07 2.04 7.67 -2.39 -0.02 2.02 16 28 H 0.11 2.23 7.65 -2.38 -0.02 2.21 16 29 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 32 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 33 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.15 2.76 6.29 -2.91 -0.02 2.74 16 35 H 0.15 2.06 5.87 -2.91 -0.02 2.04 16 Total: -1.00 -71.80 315.13 3.84 -67.96 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 1.07 Total: 5.48 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 4.11 Total: -26.29 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.28 Total: -55.96 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -2.38 Total: -34.37 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: -2.56 SS G_CDS: -1.27 Total: -3.83 kcal Total: -71.80 3.84 -67.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385296725.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.267 kcal (2) G-P(sol) polarization free energy of solvation -71.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds